Pay0012177 (gene) Melon (Payzawat) v1

Overview


Name	Pay0012177
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr01: 7284455 .. 7284820 (+)
RNA-Seq Expression	Pay0012177
Synteny	Pay0012177

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGTCCAACCCTAATCTTCAACCTTCTTCCTCCAGCATCCCAGAAAATTCCTCTTCAAACATCAATCCCACTCCAACTCCACCTTCCGTCATTGCCCTATATGAAAACTCATGCTACCTTCATCACTCTAACAACACCAATCTAATCCTTGTATCTGATCTCCTCATCGAATCAAACTATACTTCTTGGAATTGTGCCTTCCTTCTTGGCCTCACCGTGAAAATTAAAGTTTACTTCATTGATGTAACTCTAACATGCCTCACAGATGCCCTTCGAAGTTCTTGGATCATTTGCAACAGTATCGTCACCGCCTGGATTTTGAACTCAATTTCAAAGCTATCTCTACATTGCCTCGAGTAA

mRNA sequence

ATGGCTGAGTCCAACCCTAATCTTCAACCTTCTTCCTCCAGCATCCCAGAAAATTCCTCTTCAAACATCAATCCCACTCCAACTCCACCTTCCGTCATTGCCCTATATGAAAACTCATGCTACCTTCATCACTCTAACAACACCAATCTAATCCTTGTATCTGATCTCCTCATCGAATCAAACTATACTTCTTGGAATTGTGCCTTCCTTCTTGGCCTCACCGTGAAAATTAAAGTTTACTTCATTGATGTAACTCTAACATGCCTCACAGATGCCCTTCGAAGTTCTTGGATCATTTGCAACAGTATCGTCACCGCCTGGATTTTGAACTCAATTTCAAAGCTATCTCTACATTGCCTCGAGTAA

Coding sequence (CDS)

ATGGCTGAGTCCAACCCTAATCTTCAACCTTCTTCCTCCAGCATCCCAGAAAATTCCTCTTCAAACATCAATCCCACTCCAACTCCACCTTCCGTCATTGCCCTATATGAAAACTCATGCTACCTTCATCACTCTAACAACACCAATCTAATCCTTGTATCTGATCTCCTCATCGAATCAAACTATACTTCTTGGAATTGTGCCTTCCTTCTTGGCCTCACCGTGAAAATTAAAGTTTACTTCATTGATGTAACTCTAACATGCCTCACAGATGCCCTTCGAAGTTCTTGGATCATTTGCAACAGTATCGTCACCGCCTGGATTTTGAACTCAATTTCAAAGCTATCTCTACATTGCCTCGAGTAA

Protein sequence

MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIESNYTSWNCAFLLGLTVKIKVYFIDVTLTCLTDALRSSWIICNSIVTAWILNSISKLSLHCLE

Homology

[Close]

BLAST of Pay0012177 vs. ExPASy TrEMBL
Match: A0A5D3BXU2 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00100 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60
           MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES
Sbjct: 1   MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60

Query: 61  NYTSWNCAFLLGLTVKIKVYFIDVTLTCLTDALRSSWIICNSIVTAWILNSISKLSLHCL 120
           NYTSWNCAFLLGLTVKIKVYFIDVTLTCLTDALRSSWIICNSIVTAWILNSISKLSLHCL
Sbjct: 61  NYTSWNCAFLLGLTVKIKVYFIDVTLTCLTDALRSSWIICNSIVTAWILNSISKLSLHCL 120

Query: 121 E 122
           E
Sbjct: 121 E 121

[Close]

BLAST of Pay0012177 vs. ExPASy TrEMBL
Match: A0A5D3B9Q7 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold464G00020 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.2e-21
Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1  MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60
          MA +NP L P SS+ PE SSS INPTPTP SVIA+YEN  YLH   +TNLILV +LL ES
Sbjct: 1  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTES 60

Query: 61 NYTSWNCAFLLGLTVKIKVYFID 84
          NYTSWN AF+LGLT+K KVYFID
Sbjct: 61 NYTSWNRAFILGLTIKYKVYFID 83

[Close]

BLAST of Pay0012177 vs. ExPASy TrEMBL
Match: A0A5A7VHR8 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold301G00020 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.1e-20
Identity = 57/83 (68.67%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 1  MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60
          MA +NP L P SS+ PE SSS  NPTPTP SVIA+YEN  YLH   +TNLILV +LL ES
Sbjct: 1  MATTNPTLHPRSSNAPEGSSSTTNPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTES 60

Query: 61 NYTSWNCAFLLGLTVKIKVYFID 84
          NYTSWN AF+LGLT+K KV FID
Sbjct: 61 NYTSWNRAFILGLTIKYKVCFID 83

[Close]

BLAST of Pay0012177 vs. ExPASy TrEMBL
Match: A0A5A7ULN0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00140 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60
          MA+SNPNLQP SSSI ENSSS INP PTPPSV+ LYEN  YLHHS+NTNLILVSD+L ES
Sbjct: 4  MAKSNPNLQP-SSSILENSSSTINPIPTPPSVMVLYENPYYLHHSDNTNLILVSDILTES 63

Query: 61 NYTSWN 67
          +YTSWN
Sbjct: 64 SYTSWN 68

[Close]

BLAST of Pay0012177 vs. ExPASy TrEMBL
Match: A0A5D3DBR6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold778G00160 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.2e-17
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60
          MA+SNPNLQP SSSI ENSSS INP PTPPSV+ LYEN  YLHHS+NTNLILVSD+L  S
Sbjct: 4  MAKSNPNLQP-SSSILENSSSTINPIPTPPSVMVLYENPYYLHHSDNTNLILVSDILTGS 63

Query: 61 NYTSWN 67
          +YTSWN
Sbjct: 64 SYTSWN 68

[Close]

BLAST of Pay0012177 vs. NCBI nr
Match: TYK04347.1 (uncharacterized protein E5676_scaffold675G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 2.7e-58
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60
           MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES
Sbjct: 1   MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60

Query: 61  NYTSWNCAFLLGLTVKIKVYFIDVTLTCLTDALRSSWIICNSIVTAWILNSISKLSLHCL 120
           NYTSWNCAFLLGLTVKIKVYFIDVTLTCLTDALRSSWIICNSIVTAWILNSISKLSLHCL
Sbjct: 61  NYTSWNCAFLLGLTVKIKVYFIDVTLTCLTDALRSSWIICNSIVTAWILNSISKLSLHCL 120

Query: 121 E 122
           E
Sbjct: 121 E 121

[Close]

BLAST of Pay0012177 vs. NCBI nr
Match: TYJ96600.1 (uncharacterized protein E5676_scaffold464G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-21
Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1  MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60
          MA +NP L P SS+ PE SSS INPTPTP SVIA+YEN  YLH   +TNLILV +LL ES
Sbjct: 1  MATTNPTLHPRSSNAPEGSSSTINPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTES 60

Query: 61 NYTSWNCAFLLGLTVKIKVYFID 84
          NYTSWN AF+LGLT+K KVYFID
Sbjct: 61 NYTSWNRAFILGLTIKYKVYFID 83

[Close]

BLAST of Pay0012177 vs. NCBI nr
Match: KAA0065335.1 (uncharacterized protein E6C27_scaffold301G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 57/83 (68.67%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 1  MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60
          MA +NP L P SS+ PE SSS  NPTPTP SVIA+YEN  YLH   +TNLILV +LL ES
Sbjct: 1  MATTNPTLHPRSSNAPEGSSSTTNPTPTPSSVIAMYENPYYLHQFGSTNLILVFNLLTES 60

Query: 61 NYTSWNCAFLLGLTVKIKVYFID 84
          NYTSWN AF+LGLT+K KV FID
Sbjct: 61 NYTSWNRAFILGLTIKYKVCFID 83

[Close]

BLAST of Pay0012177 vs. NCBI nr
Match: KAA0056742.1 (uncharacterized protein E6C27_scaffold486G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60
          MA+SNPNLQP SSSI ENSSS INP PTPPSV+ LYEN  YLHHS+NTNLILVSD+L ES
Sbjct: 4  MAKSNPNLQP-SSSILENSSSTINPIPTPPSVMVLYENPYYLHHSDNTNLILVSDILTES 63

Query: 61 NYTSWN 67
          +YTSWN
Sbjct: 64 SYTSWN 68

[Close]

BLAST of Pay0012177 vs. NCBI nr
Match: TYK21022.1 (uncharacterized protein E5676_scaffold778G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MAESNPNLQPSSSSIPENSSSNINPTPTPPSVIALYENSCYLHHSNNTNLILVSDLLIES 60
          MA+SNPNLQP SSSI ENSSS INP PTPPSV+ LYEN  YLHHS+NTNLILVSD+L  S
Sbjct: 4  MAKSNPNLQP-SSSILENSSSTINPIPTPPSVMVLYENPYYLHHSDNTNLILVSDILTGS 63

Query: 61 NYTSWN 67
          +YTSWN
Sbjct: 64 SYTSWN 68

The following BLAST results are available for this feature:

BLAST of Pay0012177 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0012177 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BXU2	1.3e-58	100.00	Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3B9Q7	2.2e-21	71.08	Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7VHR8	9.1e-20	68.67	Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7ULN0	1.1e-17	80.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DBR6	7.2e-17	78.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Pay0012177 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04347.1	2.7e-58	100.00	uncharacterized protein E5676_scaffold675G00100 [Cucumis melo var. makuwa]	[more]
TYJ96600.1	4.5e-21	71.08	uncharacterized protein E5676_scaffold464G00020 [Cucumis melo var. makuwa]	[more]
KAA0065335.1	1.9e-19	68.67	uncharacterized protein E6C27_scaffold301G00020 [Cucumis melo var. makuwa]	[more]
KAA0056742.1	2.3e-17	80.30	uncharacterized protein E6C27_scaffold486G00140 [Cucumis melo var. makuwa]	[more]
TYK21022.1	1.5e-16	78.79	uncharacterized protein E5676_scaffold778G00160 [Cucumis melo var. makuwa]	[more]

BLAST of Pay0012177 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 43..86 e-value: 2.5E-8 score: 33.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 38..114
None	No IPR available	PANTHER	PTHR37610:SF53	SUBFAMILY NOT NAMED	coord: 38..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0012177.1	Pay0012177.1	mRNA