Pay0012166 (gene) Melon (Payzawat) v1

Overview


Name	Pay0012166
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	40S ribosomal protein S13-like
Location	chr10: 26127292 .. 26129500 (-)
RNA-Seq Expression	Pay0012166
Synteny	Pay0012166

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTACATAAAGTTCAAGTCTACACTAGATAGCCTCAAGATCTTAGTTAATTGATTCAAGATTATATTATTCTATTTTCACTAATAAGTCCTCAATAACCACTTTATTTAATAGAATGTAAATTAAACTACAAACTACAAGTTTTAGGACATAAATTCCAACAACTATTATATATCTACCACGATCTATCTTGCATATAAAGAGGTCTGAATCTATACTCATTTTCGATCATCTATATCTATCACGATTCTATCACTTTAGAAACAAATATAGCTTTAAGTTGTCGCTTGGGAACAAATTGAAAAAAGACCATAATGGTCGGTTTTGAAAAAGCGGACCTTTAATGTCGGTTTCCACCGACATTAAAGACTAAGCTTAATGTCGATTTTAAAACGACATTAAAAAGTCCGCCATTTTTGAAAACTGACATTAAAGTCCATTTAAATTTTAATTTTTAATATTTTTATTTTTGAAAAAAAAATTTAAAGACACTTTAATGTCGGTTTCCCACCGACATTAAAGGGTCCATTTTAATTTTTTTTAGTAATTTTTTTTTTTTTAATAATTTTTTTGTAACATTCTCTCTCTTACTTTACCCTTTTCGACCGTCGGCTATACGAAGATCAACCATTCGACCATCTATTCGACCATCTCCCTCGTCTTCTCCGAACTATTTCTTCTCCGAACCTCCTTCATTTCTTCTCAGATCGACGCCACAATTTTAATCGACGCCACCATTCCGATCGATTGTTGTTCTCTTCGCCCACCCTTGGAATCAAATTCGGCCGCATTTCTCTCCTTCTAAAGAAACTCATCCGCTCGTCCGCGTTCACAGCAACCGTGTTCACAGCAACCGTGTTCACAGCAACCGCGTTCACAACAACCAGGTTTTTTGAAACTCATCCGCTCGTCCGCGTTCACAGCAACCAGCAACCAGGTTCGCCCACCCTTGAATCAAATTCGTCCGTGTTCACAAAATACATCCTCTCACATTCTCATTCTCCCTCTCACATTCACAGCAACGACAGTAAAATTTCCATCTTCTTTCAAGTGGTTGCGATTTTTTTAATTTGGGGTTTTTAGCATGTTTTTTGATTTTGATTTAGATTATGGATTCTTAGACAAGGGAAAGTTGTCAAGGCATTGGAAGATTTGTGTTGCGGGCTTTATTGGCGTCGACGAATCTTGAAAAGCATAAATTAATTACAATAATGCTGTAAATAAGGATGAAATGGCTGGAGTTGCGTTTAGTACAAGCTTCTTGTATTTGGTAGATGAGGTGTAGTGACAGGTAGGCAACCAGGTTAGAGAAGTTGTGCTATGTTAAAATCTTGGTCAAACTGGAAGTTCTTACTTTCTACTGGGTTCATAGAAAGGAATCAAAAAACTATTCTCTTTAGAATTAGCTTAACTTAGGCAGGAAAATGAATGGAGAAAATAAAGCTATAACACTGCTGTAGTTGTAAGAAGTTCTTATAAAATCGGCAATAAAGTAGGAATGTAGAGACTTTTAGATTTGAGAGACCATATGCAGCTGTGTAATAGTGGAGGTGATCTTCAAAAATCAGTGTAATTGATCTTGTTTTCTAATTTTCTAATTTTCTAATTTTTTTATGGTTTAGGTGAGGATATAGTTTTCTAATTTTCTAGACCATATGCAACTGATTTCTAATTTTCTAGACCATATGCAACTATTTTCTAATCTTCTCTTGTTTCCATCTCACCTTTCCGCTTGGATGATTTAGGTGAGGATATAGTTTGCATCGGTGTCATTCTTCGTGATTCTCACGGTACTGCTCAGGTTAAGAGTGTTACTGGCAATAAGATCTTGCGCATTCTTAAAGCTCATGGTATTGTACTTGTTCTTCTTGTTCATCAATTCGAAATTTTAATGTATTAGTTTTAGGTTTTAGCTATTACCAGGATAGATATGGAAGATTGAGTATATGTTAATGTATTAGTTTTAGGTTTTAGCTGTTGTGGTAATTGAATGTGTGTTTTTTATTACTATCAAAAGGACTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAACATGAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATAG

mRNA sequence

ATGTCTCTACATAAAGTTCAAGATATAGTTTGCATCGGTGTCATTCTTCGTGATTCTCACGGTACTGCTCAGGTTAAGAGTGTTACTGGCAATAAGATCTTGCGCATTCTTAAAGCTCATGGACTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAACATGAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATAG

Coding sequence (CDS)

ATGTCTCTACATAAAGTTCAAGATATAGTTTGCATCGGTGTCATTCTTCGTGATTCTCACGGTACTGCTCAGGTTAAGAGTGTTACTGGCAATAAGATCTTGCGCATTCTTAAAGCTCATGGACTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAACATGAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATAG

Protein sequence

MSLHKVQDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Homology

[Close]

BLAST of Pay0012166 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-42
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 12  IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNMKDK 71
           IGVILRDSHG AQV SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERN KDK
Sbjct: 50  IGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDK 109

Query: 72  DSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 110 DSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of Pay0012166 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-42
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 12  IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNMKDK 71
           IGVILRDSHG  QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERN KDK
Sbjct: 50  IGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDK 109

Query: 72  DSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 110 DSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of Pay0012166 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-42
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 12  IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNMKDK 71
           IGVILRDSHG  QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERN KDK
Sbjct: 50  IGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDK 109

Query: 72  DSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 110 DSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of Pay0012166 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.1e-42
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 12  IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNMKDK 71
           IGVILRDSHG AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER  KDK
Sbjct: 50  IGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDK 109

Query: 72  DSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 110 DSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of Pay0012166 vs. ExPASy Swiss-Prot
Match: Q69UI2 (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117200 PE=3 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 4.2e-39
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 12  IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNMKDK 71
           IGV+LRD HG   VKSVTG+KILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERN KDK
Sbjct: 50  IGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDK 109

Query: 72  DSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           DSKFRLILVESRIHRLARYYK+TKKLPP WK
Sbjct: 110 DSKFRLILVESRIHRLARYYKRTKKLPPTWK 140

[Close]

BLAST of Pay0012166 vs. ExPASy TrEMBL
Match: A0A5A7UL87 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001740 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 7   QDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 66
           +DIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER
Sbjct: 9   EDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 68

Query: 67  NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 69  NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 104

[Close]

BLAST of Pay0012166 vs. ExPASy TrEMBL
Match: A0A1S3CCE6 (40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103499396 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 7   QDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 66
           +DIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER
Sbjct: 9   EDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 68

Query: 67  NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 69  NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 104

[Close]

BLAST of Pay0012166 vs. ExPASy TrEMBL
Match: A0A1S3CS02 (40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103504108 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.6e-44
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 5   KVQDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHL 64
           K +DIV IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHL
Sbjct: 10  KGEDIVYIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHL 69

Query: 65  ERNMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           ERN KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 70  ERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 107

[Close]

BLAST of Pay0012166 vs. ExPASy TrEMBL
Match: A0A5A7VKU6 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00370 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 7   QDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 66
           +DIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH IKKAVSIRKHLER
Sbjct: 108 EDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHFIKKAVSIRKHLER 167

Query: 67  NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           N KDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Sbjct: 168 NRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK 203

[Close]

BLAST of Pay0012166 vs. ExPASy TrEMBL
Match: A0A1S3CSM9 (40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103504390 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 7   QDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 66
           +DIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH IKKAVSIRKHLER
Sbjct: 1   EDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHFIKKAVSIRKHLER 60

Query: 67  NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           N KDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Sbjct: 61  NRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK 96

[Close]

BLAST of Pay0012166 vs. NCBI nr
Match: XP_008460618.1 (PREDICTED: 40S ribosomal protein S13-like [Cucumis melo] >KAA0054229.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 3.8e-45
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 7   QDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 66
           +DIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER
Sbjct: 9   EDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 68

Query: 67  NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 69  NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 104

[Close]

BLAST of Pay0012166 vs. NCBI nr
Match: XP_008466776.1 (PREDICTED: 40S ribosomal protein S13-like [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-43
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 5   KVQDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHL 64
           K +DIV IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHL
Sbjct: 10  KGEDIVYIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHL 69

Query: 65  ERNMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           ERN KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 70  ERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 107

[Close]

BLAST of Pay0012166 vs. NCBI nr
Match: XP_008466991.1 (PREDICTED: 40S ribosomal protein S13-like, partial [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 2.7e-43
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 7   QDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 66
           +DIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH IKKAVSIRKHLER
Sbjct: 1   EDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHFIKKAVSIRKHLER 60

Query: 67  NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           N KDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Sbjct: 61  NRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK 96

[Close]

BLAST of Pay0012166 vs. NCBI nr
Match: KAA0067830.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 185.3 bits (469), Expect = 2.7e-43
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 7   QDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 66
           +DIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYH IKKAVSIRKHLER
Sbjct: 108 EDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHFIKKAVSIRKHLER 167

Query: 67  NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           N KDKDSKF+LILVESRIHRLARYYKKTKK+PPVWK
Sbjct: 168 NRKDKDSKFKLILVESRIHRLARYYKKTKKVPPVWK 203

[Close]

BLAST of Pay0012166 vs. NCBI nr
Match: TYK24869.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 7   QDIVCIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 66
           +DIV IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER
Sbjct: 9   EDIVYIGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 68

Query: 67  NMKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           N KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 69  NRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 104

[Close]

BLAST of Pay0012166 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-43
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 12  IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNMKDK 71
           IGVILRDSHG  QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERN KDK
Sbjct: 50  IGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDK 109

Query: 72  DSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 110 DSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of Pay0012166 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-43
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 12  IGVILRDSHGTAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNMKDK 71
           IGVILRDSHG  QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERN KDK
Sbjct: 50  IGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDK 109

Query: 72  DSKFRLILVESRIHRLARYYKKTKKLPPVWK 103
           DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 110 DSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

The following BLAST results are available for this feature:

BLAST of Pay0012166 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	1.1e-42	95.60	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59223	2.4e-42	94.51	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P59224	2.4e-42	94.51	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P46298	3.1e-42	95.60	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
Q69UI2	4.2e-39	87.91	40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of Pay0012166 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UL87	1.8e-45	98.96	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3CCE6	1.8e-45	98.96	40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103499396 PE=3 SV=1	[more]
A0A1S3CS02	7.6e-44	95.92	40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103504108 PE=3 SV=1	[more]
A0A5A7VKU6	1.3e-43	94.79	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3CSM9	1.3e-43	94.79	40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103504390 PE=3 SV=1	[more]

BLAST of Pay0012166 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460618.1	3.8e-45	98.96	PREDICTED: 40S ribosomal protein S13-like [Cucumis melo] >KAA0054229.1 40S ribos...	[more]
XP_008466776.1	1.6e-43	95.92	PREDICTED: 40S ribosomal protein S13-like [Cucumis melo]	[more]
XP_008466991.1	2.7e-43	94.79	PREDICTED: 40S ribosomal protein S13-like, partial [Cucumis melo]	[more]
KAA0067830.1	2.7e-43	94.79	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]
TYK24869.1	3.5e-43	96.88	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]

BLAST of Pay0012166 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	1.7e-43	94.51	Ribosomal protein S13/S15	[more]
AT4G00100.1	1.7e-43	94.51	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 32..102 e-value: 7.5E-8 score: 42.1
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 36..96 e-value: 5.4E-14 score: 52.1
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 60..90
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 32..102 e-value: 1.07257E-22 score: 81.7806
None	No IPR available	GENE3D	1.10.287.10		coord: 45..102 e-value: 1.8E-33 score: 116.6
None	No IPR available	GENE3D	4.10.860.130		coord: 10..44 e-value: 5.7E-18 score: 66.4
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 11..102
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 11..102
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 28..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0012166.1	Pay0012166.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome