Pay0011900 (gene) Melon (Payzawat) v1

Overview


Name	Pay0011900
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribosomal protein
Location	chr02: 14924422 .. 14926669 (-)
RNA-Seq Expression	Pay0011900
Synteny	Pay0011900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATACGGAAGAACAAAGTTCCATATTCCGTACTGCTTTTAGTCGTTCATCTCAGCTGCTGACCGTCGTTCTCGATCCGAGGGTATTTGCTAAGAAATCCTTCATTTTTTCAGTTAAGATTTGCATCAACAGTAGTTACTGCAACACCCTCTTCCTGTTTTTTTTCTTTGTTAGATTTCGCTTTCAATTTCATTTAGGGTTTTAGGGTTTTGTACCGATTTCTGTTTTTGCAAGTTCTCTTTTTAACTTCTTTATGCAAAGGTTGATTTGTTTCGATTAATCTTCTCTGAGTTATTTATTTATTTATTTATTTTGAATGATTGAGGAAGAATTTATTATTGGGTTAATCAAGTAAAAGTTTAGTGTTCTTAATCATAAAACGGAACTTCAATAATGAGATTGTTAGGGGGAGCTCATTGGATCTCTGCAAAATCCCATTCGTTTCACTTAATGAGATGAACAGTTGTTGTTTCATCACATTTCTTTTCTGGGTTTTCAATTCAAGTACTGGAGGACAGAGTTTTGCCTTGTAGATCCATGAATTAACCATTTTTTTACTGGAATTTTCAGTGTATCCTTATTATTTTCCCGTAATGGAGTGTCGCTTGATATGCTTGCTTTTATTTTTCTCCAGCCATGAAAGTCCGTTCTTCGGTGAAAAAGATGTGCGAATTTTGTAGGACAGTGAAGCGTAAAGGCCGAGTATATATATACTGCTCATCTAATCCCAAACACAAGCAACGCCAGGGCCTGTCTACATTTGCATGTGAAGGTCCTTCTCCTTCCTTGTAAGTGCTTAACAACTTTCCTTCGATATAGGCAGTGTTTGTTATTGTTCTTTGAAAACGGACTTTATCCATAATTAGGCCAAGGAATCCCAAGTTATTTCTTAAGGGGTATTTCATGAAAGTAGTTTGAGTTTATGTAAAACCAAAGAGGACAGAACTCTTACATATAAAATTGTAAAAATAAAATGTCCGAGGCTGAGCGCTTCCCTCTTGACTTAGGGGTGGCGTGGTATTCCACAGGAGGGTTTTTTTTTCTTCTTTTTTTTCCCAAATTGTGGTGCATTTCTCAGTCGCATTGAGCTTAACATTATCACTTTCCTGTGAGGGTTTCAATGGCCGCTTTACTGCCCTAGCTTTTGCAGTCAAAGCGAGGGGTTTTGCCAACATTAAAAATAAATACATATAAAATTGTAAAACTTTTGTGAATGAATGCTTGATTTCTGGAAACTGGTTTTTCAAATTTGGCACTTACAAGTCTTTCCAGTTCCATCCTCTACAATGCAGCTAGAGTTTTTTTTGGGATTGTTGGAAGTTGTTTTGTTATCATGAATAATATGCTCAGTTTACATATCCATATATGGTATGCAAGTTTATATTTGGGATTAATTTGTTAGGATTATTCCTAACTAGAATAGTATTTGAATATATTGAAATATAAAGAAGAAATACAAGATAATCCAAAACCAAGTTCAAGATACTTGGGAATCTTCCTCTTGAACAAACTAACTCAAGCCTTAAACCACTCAACTAATGCATACCTTCACTCATTCACGCTTCCATTCAGTAGCTAACTAACTTTCTATCTAACTATCTAACTATCCATTTATCCTGATACCCTTTACTAATATCATAAGAATATTTTCTTATCTAGATACCTTGCGTTATCTCATGATTGTTGTAGCTAAATGCACTAAACTTGGCCTGTTTTTCAGGTTCTCAAGAACCGAGGTGAAGCAAGAGATTCTTCCCAGTCAAGGCTCGCGAATGGGGCTGGCTTCTCTCATCCCCCAAAAGAATGAGCCAACAATGTTGCTTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAATTAGCTTAGTAATAAACAAAAAGGAAGAAAGAATATTAGTCATTGGTTTCTCTTCGACCTTTGATTGACAATACCAGTATTTTCAACTAGGATTCTGCTCCTAAAAAGAAATAAGCACTGCTGCTCTGAGTTTTGTTCGCTATTTGAGTTGGTTTTGATATTTAGAATTGGAGGAAGAGAAGGTGTTACATTCAATATCATAATTGTGTTTATTGCTAGGTTGTTTTATTTTTAGATCTGCTAGCCATCTATAATGTTGTGATTTTCAATCCTTAATTTTCTTCCAAGTAATTCTGAAATCCTCAAAAATATAATTAGTTAAATTGTATGCTAACAAGTTGGGAAAGTTCAAATGCTATTTAAGTCTCAGTTTCAATATCC

mRNA sequence

GGATACGGAAGAACAAAGTTCCATATTCCGTACTGCTTTTAGTCGTTCATCTCAGCTGCTGACCGTCGTTCTCGATCCGAGGGTATTTGCTAAGAAATCCTTCATTTTTTCACCATGAAAGTCCGTTCTTCGGTGAAAAAGATGTGCGAATTTTGTAGGACAGTGAAGCGTAAAGGCCGAGTATATATATACTGCTCATCTAATCCCAAACACAAGCAACGCCAGGGCCTGTCTACATTTGCATGTGAAGGTCCTTCTCCTTCCTTGTTCTCAAGAACCGAGGTGAAGCAAGAGATTCTTCCCAGTCAAGGCTCGCGAATGGGGCTGGCTTCTCTCATCCCCCAAAAGAATGAGCCAACAATGTTGCTTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAATTAGCTTAGTAATAAACAAAAAGGAAGAAAGAATATTAGTCATTGGTTTCTCTTCGACCTTTGATTGACAATACCAGTATTTTCAACTAGGATTCTGCTCCTAAAAAGAAATAAGCACTGCTGCTCTGAGTTTTGTTCGCTATTTGAGTTGGTTTTGATATTTAGAATTGGAGGAAGAGAAGGTGTTACATTCAATATCATAATTGTGTTTATTGCTAGGTTGTTTTATTTTTAGATCTGCTAGCCATCTATAATGTTGTGATTTTCAATCCTTAATTTTCTTCCAAGTAATTCTGAAATCCTCAAAAATATAATTAGTTAAATTGTATGCTAACAAGTTGGGAAAGTTCAAATGCTATTTAAGTCTCAGTTTCAATATCC

Coding sequence (CDS)

ATGAAAGTCCGTTCTTCGGTGAAAAAGATGTGCGAATTTTGTAGGACAGTGAAGCGTAAAGGCCGAGTATATATATACTGCTCATCTAATCCCAAACACAAGCAACGCCAGGGCCTGTCTACATTTGCATGTGAAGGTCCTTCTCCTTCCTTGTTCTCAAGAACCGAGGTGAAGCAAGAGATTCTTCCCAGTCAAGGCTCGCGAATGGGGCTGGCTTCTCTCATCCCCCAAAAGAATGAGCCAACAATGTTGCTTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAATTAG

Protein sequence

MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN

Homology

[Close]

BLAST of Pay0011900 vs. ExPASy Swiss-Prot
Match: B3WAJ5 (50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ V+RKGRV I CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Pay0011900 vs. ExPASy Swiss-Prot
Match: Q035A6 (50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ V+RKGRV I CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Pay0011900 vs. ExPASy Swiss-Prot
Match: A5VLI2 (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Pay0011900 vs. ExPASy Swiss-Prot
Match: B2G8V5 (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) OX=557433 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Pay0011900 vs. ExPASy Swiss-Prot
Match: Q03PY0 (50S ribosomal protein L36 OS=Lactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB 947 / NCTC 947) OX=387344 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG 39
          MKVR SVK MCE C+ +KRKGRV + CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Pay0011900 vs. ExPASy TrEMBL
Match: A0A1S3B8W2 (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103487446 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.7e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60
           MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60

Query: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 101
           ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
Sbjct: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 100

[Close]

BLAST of Pay0011900 vs. ExPASy TrEMBL
Match: A0A5A7U4L3 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001300 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.7e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60
           MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60

Query: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 101
           ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
Sbjct: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 100

[Close]

BLAST of Pay0011900 vs. ExPASy TrEMBL
Match: A0A6J1CT08 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.4e-42
Identity = 87/100 (87.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60
           MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGPSP LFSR+EVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPPLFSRSEVKQE 60

Query: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 101
           ILPS   R GLASLIPQK+EPT + GWRMGLASILLKKHN
Sbjct: 61  ILPSYSPRTGLASLIPQKHEPTTMFGWRMGLASILLKKHN 100

[Close]

BLAST of Pay0011900 vs. ExPASy TrEMBL
Match: A0A6J1EZS5 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.9e-41
Identity = 86/100 (86.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60
           MKVR+SVKKMCEFCRTV+R+GRVYIYCS+NPKHKQRQGLSTFA E PSPSLFSR+EVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 101
           ILPS  SR GLASLIPQK+EPTML GWRMGLASIL KK N
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Pay0011900 vs. ExPASy TrEMBL
Match: A0A6J1JBN8 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111485318 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.7e-41
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60
           MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLST A EGPSP LF  +EVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 101
           ILPS  SR GLASL+PQK+EPTML GWRMGLASILLKKHN
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGLASILLKKHN 100

[Close]

BLAST of Pay0011900 vs. NCBI nr
Match: XP_008443993.2 (PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo] >XP_008443994.2 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo] >XP_008443996.1 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo] >KAA0050174.1 50S ribosomal protein L36 [Cucumis melo var. makuwa] >TYK06427.1 50S ribosomal protein L36 [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 5.5e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60
           MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60

Query: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 101
           ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
Sbjct: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 100

[Close]

BLAST of Pay0011900 vs. NCBI nr
Match: XP_004150587.2 (uncharacterized protein LOC101223220 [Cucumis sativus] >KGN65627.2 hypothetical protein Csa_020116 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45
Identity = 95/100 (95.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60
           MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSRTEVKQE
Sbjct: 44  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQE 103

Query: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 101
           ILPSQ  R GLASLIPQKNEPTM LGWRMGLASILLKKHN
Sbjct: 104 ILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN 143

[Close]

BLAST of Pay0011900 vs. NCBI nr
Match: XP_038879717.1 (uncharacterized protein LOC120071478 [Benincasa hispida])

HSP 1 Score: 181.8 bits (460), Expect = 2.9e-42
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60
           MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGP PSLFSR+EVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPPPSLFSRSEVKQE 60

Query: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 101
           +LPS  SR GLASLIPQK+EPTMLLGWRMGLASILLKK N
Sbjct: 61  LLPSHSSRTGLASLIPQKHEPTMLLGWRMGLASILLKKRN 100

[Close]

BLAST of Pay0011900 vs. NCBI nr
Match: XP_022144930.1 (uncharacterized protein LOC111014487 [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 87/100 (87.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60
           MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGPSP LFSR+EVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPPLFSRSEVKQE 60

Query: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 101
           ILPS   R GLASLIPQK+EPT + GWRMGLASILLKKHN
Sbjct: 61  ILPSYSPRTGLASLIPQKHEPTTMFGWRMGLASILLKKHN 100

[Close]

BLAST of Pay0011900 vs. NCBI nr
Match: KAG7023520.1 (rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.8 bits (447), Expect = 9.4e-41
Identity = 85/100 (85.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60
           MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLST A EGPSP LF  +EVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 101
           ILPS  SR GLASL+PQK+EPTML+GWRMGLASILLKKHN
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 100

[Close]

BLAST of Pay0011900 vs. TAIR 10
Match: AT5G20180.1 (Ribosomal protein L36 )

HSP 1 Score: 127.5 bits (319), Expect = 6.1e-30
Identity = 67/103 (65.05%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPS-LFSRTEVKQ 60
           MKVRSSVKKMCEFC+TVKR+GRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 61  EI--LPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 101
           E+  LP QG   GLASL+ ++  PT   GWR GLASIL K+ N
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]

BLAST of Pay0011900 vs. TAIR 10
Match: AT5G20180.2 (Ribosomal protein L36 )

HSP 1 Score: 127.5 bits (319), Expect = 6.1e-30
Identity = 67/103 (65.05%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPS-LFSRTEVKQ 60
           MKVRSSVKKMCEFC+TVKR+GRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 61  EI--LPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 101
           E+  LP QG   GLASL+ ++  PT   GWR GLASIL K+ N
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]

BLAST of Pay0011900 vs. TAIR 10
Match: ATCG00760.1 (ribosomal protein L36 )

HSP 1 Score: 55.1 bits (131), Expect = 3.8e-08
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG 39
          MK+R+SV+K+CE CR ++R+GR+ + C SNP+HKQRQG
Sbjct: 1  MKIRASVRKICEKCRLIRRRGRIIVIC-SNPRHKQRQG 37

The following BLAST results are available for this feature:

BLAST of Pay0011900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3WAJ5	3.1e-10	78.95	50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ...	[more]
Q035A6	3.1e-10	78.95	50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 170...	[more]
A5VLI2	8.9e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 ...	[more]
B2G8V5	8.9e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) OX=557433 G...	[more]
Q03PY0	1.2e-09	73.68	50S ribosomal protein L36 OS=Lactobacillus brevis (strain ATCC 367 / BCRC 12310 ...	[more]

BLAST of Pay0011900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B8W2	2.7e-49	100.00	Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103487446 PE=3 SV=1	[more]
A0A5A7U4L3	2.7e-49	100.00	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00...	[more]
A0A6J1CT08	5.4e-42	87.00	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1	[more]
A0A6J1EZS5	5.9e-41	86.00	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1	[more]
A0A6J1JBN8	7.7e-41	85.00	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111485318 PE=3 SV=1	[more]

BLAST of Pay0011900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443993.2	5.5e-49	100.00	PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo] >XP_008443994.2 P...	[more]
XP_004150587.2	2.8e-45	95.00	uncharacterized protein LOC101223220 [Cucumis sativus] >KGN65627.2 hypothetical ...	[more]
XP_038879717.1	2.9e-42	88.00	uncharacterized protein LOC120071478 [Benincasa hispida]	[more]
XP_022144930.1	1.1e-41	87.00	uncharacterized protein LOC111014487 [Momordica charantia]	[more]
KAG7023520.1	9.4e-41	85.00	rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Pay0011900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20180.1	6.1e-30	65.05	Ribosomal protein L36	[more]
AT5G20180.2	6.1e-30	65.05	Ribosomal protein L36	[more]
ATCG00760.1	3.8e-08	60.53	ribosomal protein L36	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000473	Ribosomal protein L36	PFAM	PF00444	Ribosomal_L36	coord: 1..38 e-value: 2.5E-22 score: 78.8
IPR000473	Ribosomal protein L36	TIGRFAM	TIGR01022	TIGR01022	coord: 1..38 e-value: 9.5E-18 score: 62.0
IPR000473	Ribosomal protein L36	PROSITE	PS00828	RIBOSOMAL_L36	coord: 11..37
IPR000473	Ribosomal protein L36	HAMAP	MF_00251	Ribosomal_L36	coord: 1..38 score: 18.316795
None	No IPR available	PANTHER	PTHR18804	FAMILY NOT NAMED	coord: 1..99
None	No IPR available	PANTHER	PTHR18804:SF16	RIBOSOMAL PROTEIN	coord: 1..99
IPR035977	Ribosomal protein L36 superfamily	SUPERFAMILY	57840	Ribosomal protein L36	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0011900.2	Pay0011900.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome