Pay0011786 (gene) Melon (Payzawat) v1

Overview
NamePay0011786
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionDNA-directed RNA polymerase subunit
Locationchr03: 25320149 .. 25324412 (-)
RNA-Seq ExpressionPay0011786
SyntenyPay0011786
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTTGATTAGGCCCAACCCTATTTAATGGCATATTCGAAAATAATGTAAAACTAAATTCTTTTTTTTTAAAAAAAAAAAAGAAAAAGAAAAGCAAAACCCTATTTTCACCTTCTAGCCCCACGCCTGTTGCCGGCTCGTCACCCGCCTCCGCCGCCGCTCGTTACTGAATCTCGCCCCGACAAGTTGTCTCTAGGTAAAACAGCAAACCGTTCATCGTTTCTCTTCCATCAATGATCGATTGAGCTTGGTTGCCATAATTTTGAATGGAATCGAAATTCTGATTTCCGACGGTTGGCTTTCGTCCGGTTCCAATTTCCGCGCGTTTAGATGAATATCCACACATTCTAGCGGTCGGTTCGTTCCATATTTTCATTTTCGAACCGGACCGAACCTGTTCGCAGTCCTGCTCCTTGACCTTGAGGTTTGTAGCTTCCAAAACCCAAAACCCAGGATGAAACTATCTTGTCTTCATTGTTCTGCTTCAGCAAGTTTTCTATAAGGTTGATCATTGATCCATATCTCCGCCCATCTCAGCTCTCTTTGGCTAACTTTTCGACAAGAACTCTGTGAAATCTCTTTCTCGGGCTTCATTAATTTTAGCAAAAATATTTAACTATAGATGATAACTGGGATAGTTTGAGGTTATCGAACGGATCAAATTGAGCTTTCTACTTGTTATCTTTCGGATATCTGAATGACCCATCTTAGTTATTCTTTTGATACATTATGTTCGTTTTAATCTATTGTGGGCATGAGGTCCTTCATGCTTTTCAATTGAGGTTTTAGTTTATTGGCTGGTTCTAGGTTTTTTGAAATGGAAACAAAATTTGAGAATTGACTGCTTCTAGATGAAGCTCCAATTTCCCTTATTGTTTATCCAAATCCCCTTTTTGCTATTACAATTCTACCATCCTTTTAGCCTCAACTTTCCTGTCTTTATTTGTTGTACTTGAACTTCTTATGATTATTCTAACACCCCCCCCCCCCCCCCTCTTTTTTGTGGACTTTGTTAGTTAGGAAGCTATTGGGGAAGCAGCAAGGACCACTCATGGCTTATTCCCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCTGCTCAACGAAATATGTTGAGTGCCCTTTGTGCAAGTCTAAGCGAAGTGCAAAAGGTGGCCATAAACATTGGATTTAAGCTTATTGCATTGTAGTTATTTACTTTTATTTTTTTGTTTTGGATAATTTAAACACTCCAACACTCATTACGTATGTGAATAAGTTTTTAATCCGGTATATCTTGCTACAAGTAAACTTTGTTTTTATCTGATTGAATTGTGGTTTGGTTCATTTTTCCTTCGAGTTTATCTGAGTAAAATGTGAAAAACACGTCTATTTTTCCATTTCCTATCTTGAGTTTCTGTTTTTCTTTTTAATATTTATACTAGAATAAACTGTGTCTGGGTTGTGAGTTGGTTGTTCTTAATCTATCACCTTAAATATTTTTAAGAAAACTTCTTGTAGATAGGAGAGTAAGAGTTTCTATCTGGGAATTTGCAGCATCTTCTGCTTTGAGTGTTCAGCTTTGAAAACATGGTTTCTCATGCAACATTAGTGTTCATCTGTTCAACAGGAGTAGTTCACAGGATTTTTATTTGAGAAGGTTACCGCTGCGCTGATTGCTTATGCATTTTGTTTGAATCAAATCATAGATAAGTTGACTATCATTATTTTGATGAAAAGCTAGCTTCCATTAGGATGGGTGATTGTATTTATATATATATATATATATATATAAACCCTTCTCAAATAGGACACAAAGAAGCTTCCCTTGATGTGGCCAAACCTTTCATTTAGTTTTGCTATTCGGAAAGGAACCAAGAAGTTCACAGACGAGAGTCATCCTTTAGTTCATATTATCATCCTCTGCCATCACATTACCCCTAAGGATTGAGTATAATTTGGAACGATACGGCAAAAGCCGAGGAAATTTTGAGATGATTTTAGAGAGGATAGTTTTGAACCTATTTTCAAACATTTATCAAGAATTTTGTAAGAGCCCATAGCTAGGGAACTTGTGGGTCTATTGCCTTTCACTTCCTTGCCGTCATCTGTAGCCATGAAGGCAGTATAAATCTTGGAAAATTCACATCGAGAATTCATTTCTTAAAGAAGCCTAGATGTTGACATGGTATCATGCTTGAGGGTATCCCAGGTTTTTGTGAAAAATTCTAAGGAAAAACAATCTGGATCCTTAGCTTGCTTGGCCTTGACGAAGACTAGAAATAGCCGTTGGACCTTTATAAATTAAAGCCTACAGGAGTAGAGAACCGGCTGAATTCCAACACAGACCATTGAAGATTATGTCGTCCTCTCAGCTTAGTCCGGTAGATTGCTGGGGTTTTGACTACTGGAACCTTTACTTCAGATGGCAACTGACTGATGTAGGTGAATGCATTTGCTGAGTTGTTCATTATTTGGAAAGGTTTTTTTTGAACTAGCAGGATGGACCTTGGAAAATTTGATTCGATTTCTTCTGAAACCTATTTTCCTACTATGGATGACTTTTGTAATTTTTCCTTTAAAAGTGCAATAGGGGAAAAGAGATACCCCGAGAAGGTTAAATTCTCTGTTTGGGACGTTGATCTTTCAGATGCCCTCCCTCTCTCTCACTCAGTTATTTAACTAATCAGTTTGCTTCCTTTTACAGATAAGAACTAACTGAACCTGTATCGTCGGTATAGAAATTAACATAAATAATGCTTAGCAAGACTTCTGCTCATCCCCTGATACACTATAGTTCTTGGTAGTATTACACCTAAGATGTGTGACATATTGGGAGTGGCTAATCATAAAGCTCATCCATAACTATAAGAATACCTGGACGGAAAAAACAGGTCTTATTTATGAATAAAATTGAATATCTCCCTACTACATTACATGGTGAAAGGACTGAACTAACCGTTAGTGCACGTGGAACCAAATTCTAACTACTAACAGCTGAGCAAAAACTGTAACATATCAAACTCATTTAAATTTTCAGGCTGGTTACTCGTCTTATTCAAGGGCCCAAGTGCCATCACGATTTCCCTCAATGTCATTCAATTATAAATCTTGAAATTGATGTTCTGAAGGGTGTATACCAAATTATTTTAGAAGTTGATGGTATGCTTTCATGAATGGAGATATTGAAGTTGAGCAAATGCAATTGAGAAACTACTGTTTTAATATTTTATGCACTCTTTTATTTGGCATCTCTAACCGAATTCTCATGGCTTATTTCAGAGATCAACGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGTATGCCTTTTGAATCATAAGCACTATCCCCATGCTTTCTAGGTCTAAGGCACAGTATCCTTTCTGCAACACGCCTTTAGCAATGCTTTTTAAACTTTAGCATTCTCTTATAATTTCTGCTACTTTTATGATGCTTGCTAGGATTGTTTCTGGGTTTTTGTGGATTGTGAGAAGGGCTTAAACAAGCTATCTGTAATAGTTCTCTAGGTCCAGGCAAATCAATAAACCAGACCCTGGAAATTCTTATTGGGTAGAACATCTGGAACCGTGAAAATTTTTAGTATTAGCAAATGTCTATATGATGTAATATTCATATGATGCTCCCTTCTATTCGGTTGTCGGATATCAAAGAAATGTTTGATTTTGAAATCCTCGTGGCATTGCAGGAAATTAGAAAGCAGTTGGGAATTTCACTAATTGGTGAAGAGAAAATGCAGCTAGCAAAGGTAGTAGGAGAAAATAAGTTGTATGGTATTCGATTTTGCTTGAGATATGTAGTCCACTAATATGAAGCTGTGTGATGTTTGACAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTACAAACATTAACAAAACTAGAATTGTGGGTTATTTAGGGTTTATTTCTGTCTCTTTTTTTTTCCATTAGAAAGAGTCATAAGTTTGAGTGTGGTTTGAATAAAAATGCAGATGAGATCGGCTGATGAAGGGCAGACCACATTTTATACCTGCACTAAATGCCATCATCAGACTAGAGAGAATTGATCTTCCATGCAATTTTTTCTAGGATGTCAGTGTTTTCATCCTTGGATTAGTTGGGTGGTTCCATTGGAATCCAAAAGCATAACATGATGAATTATGTTATTAAACAATTAAACTCGATCTTCATGGGATGATTTACTCTATATGAGAATATGACGAAGTAGCA

mRNA sequence

GGTTTGATTAGGCCCAACCCTATTTAATGGCATATTCGAAAATAATGTAAAACTAAATTCTTTTTTTTTAAAAAAAAAAAAGAAAAAGAAAAGCAAAACCCTATTTTCACCTTCTAGCCCCACGCCTGTTGCCGGCTCGTCACCCGCCTCCGCCGCCGCTCGTTACTGAATCTCGCCCCGACAAGTTGTCTCTAGTTAGGAAGCTATTGGGGAAGCAGCAAGGACCACTCATGGCTTATTCCCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCTGCTCAACGAAATATGTTGAGTGCCCTTTGTGCAAGTCTAAGCGAAGTGCAAAAGAGATCAACGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCACTAATTGGTGAAGAGAAAATGCAGCTAGCAAAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTACAAACATTAACAAAACTAGAATTGTGGGTTATTTAGGGTTTATTTCTGTCTCTTTTTTTTTCCATTAGAAAGAGTCATAAGTTTGAGTGTGGTTTGAATAAAAATGCAGATGAGATCGGCTGATGAAGGGCAGACCACATTTTATACCTGCACTAAATGCCATCATCAGACTAGAGAGAATTGATCTTCCATGCAATTTTTTCTAGGATGTCAGTGTTTTCATCCTTGGATTAGTTGGGTGGTTCCATTGGAATCCAAAAGCATAACATGATGAATTATGTTATTAAACAATTAAACTCGATCTTCATGGGATGATTTACTCTATATGAGAATATGACGAAGTAGCA

Coding sequence (CDS)

ATGGCTTATTCCCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCTGCTCAACGAAATATGTTGAGTGCCCTTTGTGCAAGTCTAAGCGAAGTGCAAAAGAGATCAACGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCACTAATTGGTGAAGAGAAAATGCAGCTAGCAAAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTACAAACATTAACAAAACTAGAATTGTGGGTTATTTAGGGTTTATTTCTGTCTCTTTTTTTTTCCATTAG

Protein sequence

MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLGISLIGEEKMQLAKERRRCEKCGNDEAWFESRQVHFTNINKTRIVGYLGFISVSFFFH
Homology
[Close]
BLAST of Pay0011786 vs. ExPASy TrEMBL
Match: A0A1S3BBZ4 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.2e-46
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQVHFTNINKT 102
           ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQ+   +  +T
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQT 101

[Close]
BLAST of Pay0011786 vs. ExPASy TrEMBL
Match: A0A0A0LKC4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.5e-43
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFCSTKYVECP CKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQVHFTNINKT 102
           ISLI EEKMQLAKERRRCEKCGNDEAWFESRQ+   +  +T
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQT 101

[Close]
BLAST of Pay0011786 vs. ExPASy TrEMBL
Match: A0A6J1CTE6 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014043 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.8e-42
Identity = 87/101 (86.14%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQVHFTNINKT 102
           ISLI EEK+QL+KERRRCEKCGNDEAWFESRQ+   +  +T
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQT 101

[Close]
BLAST of Pay0011786 vs. ExPASy TrEMBL
Match: A0A6J1KC19 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKS+RSAK I GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKGIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQVHFTNINKT 102
           ISLI EEKMQL+KERRRCEKCGNDEAWFESRQ+   +  +T
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQT 101

[Close]
BLAST of Pay0011786 vs. ExPASy TrEMBL
Match: A0A6J1HDS4 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111463020 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYS GHDFLFCNLCGTMLSF STKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSGGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQVHFTNINKT 102
           ISLI EEKMQL+KERRRCEKCGNDEAWFESRQ+   +  +T
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQT 101

[Close]
BLAST of Pay0011786 vs. NCBI nr
Match: XP_008445334.1 (PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445336.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445337.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445338.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo])

HSP 1 Score: 194.1 bits (492), Expect = 6.6e-46
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQVHFTNINKT 102
           ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQ+   +  +T
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQT 101

[Close]
BLAST of Pay0011786 vs. NCBI nr
Match: XP_004143007.1 (DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031736324.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031736325.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031736326.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >KGN62253.1 hypothetical protein Csa_018548 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 5.3e-43
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFCSTKYVECP CKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQVHFTNINKT 102
           ISLI EEKMQLAKERRRCEKCGNDEAWFESRQ+   +  +T
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQT 101

[Close]
BLAST of Pay0011786 vs. NCBI nr
Match: KAG6598510.1 (DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.8 bits (460), Expect = 3.4e-42
Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 31  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 90

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQVHFTNINKT 102
           ISLI EEKMQL+KERRRCEKCGNDEAWFESRQ+   +  +T
Sbjct: 91  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQT 131

[Close]
BLAST of Pay0011786 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >KAG7029447.1 DNA-directed RNA polymerase I subunit RPA12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.8 bits (460), Expect = 3.4e-42
Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQVHFTNINKT 102
           ISLI EEKMQL+KERRRCEKCGNDEAWFESRQ+   +  +T
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQT 101

[Close]
BLAST of Pay0011786 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia])

HSP 1 Score: 180.3 bits (456), Expect = 9.9e-42
Identity = 87/101 (86.14%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQVHFTNINKT 102
           ISLI EEK+QL+KERRRCEKCGNDEAWFESRQ+   +  +T
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQT 101

[Close]
BLAST of Pay0011786 vs. TAIR 10
Match: AT3G25940.1 (TFIIB zinc-binding protein )

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-23
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
           M  SR  +FLFCNLCGTML   STKY ECP CK+ R+AK+I  +EI+YTV+AE+IR++LG
Sbjct: 1   MEKSRESEFLFCNLCGTMLVLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELG 60

Query: 61  ISLIGEE---KMQLAKERRRCEKCGNDEAWFESRQVHFTNINKT 102
           ISL GE+   + +L K ++ CEKC + E  + +RQ    +  +T
Sbjct: 61  ISLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQT 104

[Close]
BLAST of Pay0011786 vs. TAIR 10
Match: AT1G20065.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-16
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 1  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60
          M  SR  D LFCNLCGTML   STKY ECPLC++ R+ KEI  + ++YTVT E+IR++LG
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTEDIRRELG 60

Query: 61 IS 63
          IS
Sbjct: 61 IS 62

[Close]
BLAST of Pay0011786 vs. TAIR 10
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-12
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 1  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAE 54
          M  SR  D LFCNLCGTML   STKY ECPLC++ R+ KEI  + ++YTVT E
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTE 53

The following BLAST results are available for this feature:
BLAST of Pay0011786 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0011786 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BBZ43.2e-4692.08DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3... [more]
A0A0A0LKC42.5e-4388.12DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 P... [more]
A0A6J1CTE64.8e-4286.14DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110140... [more]
A0A6J1KC191.1e-4186.14DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 ... [more]
A0A6J1HDS41.1e-4186.14DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11146302... [more]
BLAST of Pay0011786 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008445334.16.6e-4692.08PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_0... [more]
XP_004143007.15.3e-4388.12DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031... [more]
KAG6598510.13.4e-4287.13DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma sub... [more]
XP_023546814.13.4e-4287.13DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >K... [more]
XP_022144336.19.9e-4286.14DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_02214... [more]
BLAST of Pay0011786 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G25940.14.9e-2350.96TFIIB zinc-binding protein [more]
AT1G20065.14.5e-1661.29FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G20065.22.3e-1260.38FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11239:SF19DNA-DIRECTED RNA POLYMERASE SUBUNITcoord: 1..97
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0011786.5Pay0011786.5mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006363 termination of RNA polymerase I transcription
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005736 RNA polymerase I complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding