Pay0010950 (gene) Melon (Payzawat) v1

Overview


Name	Pay0010950
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol protein
Location	chr05: 26100100 .. 26100489 (+)
RNA-Seq Expression	Pay0010950
Synteny	Pay0010950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTCTAAAGGTAGCACCTATGAGGGGTGTCTTAAGGTTCAAAAGAAAAGGGAAGCTAAGTCCACGTTTTGTAGGACTATTTGAGATACTTAAGCGAATTAGCCCCGTAGCTTATCGTTTGGCGTTGTCTCCATCGTTTTTTGTAGTTCATGATGTGTTTCACGTTTCAATGCTGAGGAAGTATGTAGCAGACCCGATGCATGTAGTTGACTTTGAACCATTGTAGATTAATGAGAACTTGAGTTATGAGGAGCAACCCGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTTCGTAATAGACGAATTGCACTAGTTAAAGTTCTTTGGCGGAACCACGGAGCTGAAAAGGCCACATGGGAGAGAGAGGACGACATGAGAGCCTAG

mRNA sequence

ATGGTTTTTCTAAAGGTAGCACCTATGAGGGGTGTCTTAAGGTTCAAAAGAAAAGGGAAGCTAAGTCCACGTTTTGTAGGACTATTTGAGATACTTAAGCGAATTAGCCCCGTAGCTTATCGTTTGGCGTTGTCTCCATCGTTTTTTGTAGTTCATGATGTGTTTCACGTTTCAATGCTGAGGAAGTATGTAGCAGACCCGATGCATGTAAACTTGAGTTATGAGGAGCAACCCGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTTCGTAATAGACGAATTGCACTAGTTAAAGTTCTTTGGCGGAACCACGGAGCTGAAAAGGCCACATGGGAGAGAGAGGACGACATGAGAGCCTAG

Coding sequence (CDS)

ATGGTTTTTCTAAAGGTAGCACCTATGAGGGGTGTCTTAAGGTTCAAAAGAAAAGGGAAGCTAAGTCCACGTTTTGTAGGACTATTTGAGATACTTAAGCGAATTAGCCCCGTAGCTTATCGTTTGGCGTTGTCTCCATCGTTTTTTGTAGTTCATGATGTGTTTCACGTTTCAATGCTGAGGAAGTATGTAGCAGACCCGATGCATGTAAACTTGAGTTATGAGGAGCAACCCGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTTCGTAATAGACGAATTGCACTAGTTAAAGTTCTTTGGCGGAACCACGGAGCTGAAAAGGCCACATGGGAGAGAGAGGACGACATGAGAGCCTAG

Protein sequence

MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHVNLSYEEQPVEILAREVKMLRNRRIALVKVLWRNHGAEKATWEREDDMRA

Homology

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BLAST of Pay0010950 vs. ExPASy TrEMBL
Match: A0A5A7UPS2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00200 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.3e-54
Identity = 115/129 (89.15%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 1   MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60
           MVFLKV PMRGVLRFKRKGKLSPRFVG FEILKRISPVAYRLALSPSFFVVHDVFHVSML
Sbjct: 1   MVFLKVVPMRGVLRFKRKGKLSPRFVGPFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60

Query: 61  RKYVADPMHV----------NLSYEEQPVEILAREVKMLRNRRIALVKVLWRNHGAEKAT 120
           RKYVADPMHV          NLSYEEQPVEILAREVKMLRNRRIALVK  WRNHGAEKAT
Sbjct: 61  RKYVADPMHVVDFEPLQINENLSYEEQPVEILAREVKMLRNRRIALVKAFWRNHGAEKAT 120

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BLAST of Pay0010950 vs. ExPASy TrEMBL
Match: A0A1S4DZM1 (uncharacterized protein LOC107991252 OS=Cucumis melo OX=3656 GN=LOC107991252 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.3e-54
Identity = 115/129 (89.15%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 1   MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60
           MVFLKV PMRGVLRFKRKGKLSPRFVG FEILKRISPVAYRLALSPSFFVVHDVFHVSML
Sbjct: 1   MVFLKVVPMRGVLRFKRKGKLSPRFVGPFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60

Query: 61  RKYVADPMHV----------NLSYEEQPVEILAREVKMLRNRRIALVKVLWRNHGAEKAT 120
           RKYVADPMHV          NLSYEEQPVEILAREVKMLRNRRIALVK  WRNHGAEKAT
Sbjct: 61  RKYVADPMHVVDFEPLQINENLSYEEQPVEILAREVKMLRNRRIALVKAFWRNHGAEKAT 120

[Close]

BLAST of Pay0010950 vs. ExPASy TrEMBL
Match: A0A5A7U220 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00690 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 103/129 (79.84%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60
           MVFLKVAPM+ VLRFK+KGKLSPRFVG FEIL+RI PVAYRLAL P+F  VHDVFHVSML
Sbjct: 200 MVFLKVAPMKDVLRFKKKGKLSPRFVGSFEILERIGPVAYRLALPPAFSTVHDVFHVSML 259

Query: 61  RKYVADPMHV----------NLSYEEQPVEILAREVKMLRNRRIALVKVLWRNHGAEKAT 120
           RKYVADP HV          NLSYEE+PVEILAREVKMLRNR IALVKVLWRNHG  +AT
Sbjct: 260 RKYVADPTHVVDFEPLQINENLSYEERPVEILAREVKMLRNREIALVKVLWRNHGVGEAT 319

[Close]

BLAST of Pay0010950 vs. ExPASy TrEMBL
Match: A0A5D3C081 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5117G00010 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.0e-47
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 1   MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60
           MVFLKVAPM+GVLRF++KGKLSPRFVG FEIL+RI PVAYRLAL PSFF VHDVFHVSM+
Sbjct: 535 MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFFAVHDVFHVSMM 594

Query: 61  RKYVADPMHV----------NLSYEEQPVEILAREVKMLRNRRIALVKVLWRNHGAEKAT 120
           R+YVADP HV          NLSYEEQPVEILAREVK LR+R I+LVKV+WRNHG E+AT
Sbjct: 595 RRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLRSREISLVKVIWRNHGVEEAT 654

[Close]

BLAST of Pay0010950 vs. ExPASy TrEMBL
Match: A0A5D3E202 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00040 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.6e-47
Identity = 101/129 (78.29%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60
           MVFLKVAPM+G LRF++KGKLSPRFVG FEIL+RI PVAYRLAL PSF  VHDVFHVSML
Sbjct: 638 MVFLKVAPMKGFLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVSML 697

Query: 61  RKYVADPMHV----------NLSYEEQPVEILAREVKMLRNRRIALVKVLWRNHGAEKAT 120
           R+YVADP HV          +LSYEEQPVEILAREVKMLRNR I+LVKVLWRNHG E+AT
Sbjct: 698 RRYVADPTHVVAFEPLQINEDLSYEEQPVEILAREVKMLRNRHISLVKVLWRNHGVEEAT 757

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BLAST of Pay0010950 vs. NCBI nr
Match: XP_016901428.1 (PREDICTED: uncharacterized protein LOC107991252 [Cucumis melo] >KAA0055585.1 pol protein [Cucumis melo var. makuwa] >TYK01341.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 8.8e-54
Identity = 115/129 (89.15%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 1   MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60
           MVFLKV PMRGVLRFKRKGKLSPRFVG FEILKRISPVAYRLALSPSFFVVHDVFHVSML
Sbjct: 1   MVFLKVVPMRGVLRFKRKGKLSPRFVGPFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60

Query: 61  RKYVADPMHV----------NLSYEEQPVEILAREVKMLRNRRIALVKVLWRNHGAEKAT 120
           RKYVADPMHV          NLSYEEQPVEILAREVKMLRNRRIALVK  WRNHGAEKAT
Sbjct: 61  RKYVADPMHVVDFEPLQINENLSYEEQPVEILAREVKMLRNRRIALVKAFWRNHGAEKAT 120

[Close]

BLAST of Pay0010950 vs. NCBI nr
Match: KAA0047631.1 (pol protein [Cucumis melo var. makuwa] >TYK08289.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.7e-47
Identity = 103/129 (79.84%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60
           MVFLKVAPM+ VLRFK+KGKLSPRFVG FEIL+RI PVAYRLAL P+F  VHDVFHVSML
Sbjct: 200 MVFLKVAPMKDVLRFKKKGKLSPRFVGSFEILERIGPVAYRLALPPAFSTVHDVFHVSML 259

Query: 61  RKYVADPMHV----------NLSYEEQPVEILAREVKMLRNRRIALVKVLWRNHGAEKAT 120
           RKYVADP HV          NLSYEE+PVEILAREVKMLRNR IALVKVLWRNHG  +AT
Sbjct: 260 RKYVADPTHVVDFEPLQINENLSYEERPVEILAREVKMLRNREIALVKVLWRNHGVGEAT 319

[Close]

BLAST of Pay0010950 vs. NCBI nr
Match: TYK04678.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 197.6 bits (501), Expect = 6.1e-47
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 1   MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60
           MVFLKVAPM+GVLRF++KGKLSPRFVG FEIL+RI PVAYRLAL PSFF VHDVFHVSM+
Sbjct: 535 MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFFAVHDVFHVSMM 594

Query: 61  RKYVADPMHV----------NLSYEEQPVEILAREVKMLRNRRIALVKVLWRNHGAEKAT 120
           R+YVADP HV          NLSYEEQPVEILAREVK LR+R I+LVKV+WRNHG E+AT
Sbjct: 595 RRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLRSREISLVKVIWRNHGVEEAT 654

[Close]

BLAST of Pay0010950 vs. NCBI nr
Match: TYK29789.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-46
Identity = 101/129 (78.29%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60
           MVFLKVAPM+G LRF++KGKLSPRFVG FEIL+RI PVAYRLAL PSF  VHDVFHVSML
Sbjct: 638 MVFLKVAPMKGFLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVSML 697

Query: 61  RKYVADPMHV----------NLSYEEQPVEILAREVKMLRNRRIALVKVLWRNHGAEKAT 120
           R+YVADP HV          +LSYEEQPVEILAREVKMLRNR I+LVKVLWRNHG E+AT
Sbjct: 698 RRYVADPTHVVAFEPLQINEDLSYEEQPVEILAREVKMLRNRHISLVKVLWRNHGVEEAT 757

[Close]

BLAST of Pay0010950 vs. NCBI nr
Match: KAA0054128.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46
Identity = 103/129 (79.84%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSML 60
           MVFLKVAPM+GVLRF++KGKLSPRFVG FEILKRI PVAY LAL  +F  VHDVFHVSML
Sbjct: 819 MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILKRIGPVAYHLALPLAFPAVHDVFHVSML 878

Query: 61  RKYVADPMHV----------NLSYEEQPVEILAREVKMLRNRRIALVKVLWRNHGAEKAT 120
           RKYVADP HV          NLSYEEQPVEILAREVK+LRNR IALVKVLWRNHG E+AT
Sbjct: 879 RKYVADPTHVVDFESLQINENLSYEEQPVEILAREVKVLRNRGIALVKVLWRNHGVEEAT 938

The following BLAST results are available for this feature:

BLAST of Pay0010950 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0010950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UPS2	4.3e-54	89.15	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00200 PE=...	[more]
A0A1S4DZM1	4.3e-54	89.15	uncharacterized protein LOC107991252 OS=Cucumis melo OX=3656 GN=LOC107991252 PE=...	[more]
A0A5A7U220	2.3e-47	79.84	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00690 PE...	[more]
A0A5D3C081	3.0e-47	77.52	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5117G00010 P...	[more]
A0A5D3E202	6.6e-47	78.29	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Pay0010950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901428.1	8.8e-54	89.15	PREDICTED: uncharacterized protein LOC107991252 [Cucumis melo] >KAA0055585.1 pol...	[more]
KAA0047631.1	4.7e-47	79.84	pol protein [Cucumis melo var. makuwa] >TYK08289.1 pol protein [Cucumis melo var...	[more]
TYK04678.1	6.1e-47	77.52	pol protein [Cucumis melo var. makuwa]	[more]
TYK29789.1	1.4e-46	78.29	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054128.1	2.3e-46	79.84	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0010950 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148:SF33	OS05G0296332 PROTEIN	coord: 8..119
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 8..119
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 50..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0010950.1	Pay0010950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding