Pay0010046 (gene) Melon (Payzawat) v1

Overview
NamePay0010046
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr07: 8714572 .. 8717284 (-)
RNA-Seq ExpressionPay0010046
SyntenyPay0010046
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGACATGGCGGCCAAGTAATCAATTTGAACCAATTAGACAAAGCCACTTGGAGCAAGGGAGGAGTAACACATGTGACTTTTGATTTTGCATTTGCTTTTTTTTTCTTTTGGCTTTTAAAAAGAAAATAAATTTAATATTATTATTTATCTTTGTGTCTAATGGCTCGTTTTTTAAAAAAGATTGTGAACTTGTTTTATTGGGCTTTAAGCAAATTATTTTAAAAATGGACATATTATTATATTATATTTATATTTTTGTCTAACGGCTAATTGAGTTTAAATCTCAACCATTCAATTTTCTTTTACTTACATCCGATGACCCAAAATGATTTTGGATTTGAATATCTTTCCTCTCTTTTTAAATACTTCATTTTCCCTCAAATTTTAAATAACTTTGTTTATGTGGAAATTTCATCTAATTAGTTTATTTTTTCTCTTTTAAAAGAAATCTAGCTAAAATTTGTTAGAATAACTTCTTTTAACTACTTCTTTAACTGAGTCTAAGGATAACAGTTATATATACCTTGTATCAATTAGAAAGATATACGGATAATAATATTGCTCCCAAGGTACAGTGGATGTAGGTTTTGTAAACTAAATCACTTTAAAAATCCTCTTGTGTTGCTTCTCCTAATTCCTCTCTTTTCTTCATCATCTCACCATCCTCAACAAAAAAAAAAAAGCAGTAGAAAAATCTCCATAAAATAAAACAAACACAAAAAAGGAAAGAAGGAAAGCTTGAATTTTTTTTCTCTCTATAAACACCATTCTGGAACAAACATAAAGAAAAGGGTAAAAGGAAAGAAAGAGGAAAGTTATTTTACCTTTCACATGCAAAGTGTGGCATCCTCTTGACCATACACCTGGCAGTATCTACAAATTGGTATTGGAGCCTGCAAAAGAGACTTAAGAAAGCTCCCAGATTCAGATTCTTGATTTCAAGAAACTTAAGATGACAGTAGCAAGATATGATATTGAGAAGTTTGATGGTAAGGGAGATTTTACCTTATGGAAAGCAAAGATCAAAGCCATAGTCGGCCAGCAAAAGGCACTGAAAGCTCTCACAGATCCAGAAAAACTACCTAAAATAATGATTCAAGAAGACAATGAAACTATAGAAAATGCAGCCTATAGTGCCATAGTTCTAAACCTAAGTGATAATGTCCTTAGGGAACTCATCTGTAAGCTCTCTTTCCGTTCTCTTTTATTTTATCTATATATTAATATCTCTTAAATGGTAAAAAACAAGTTGGAATACTTTTATACTTTTTAAGATTGATTCGTGTGATAAGGAAATTTTAGAACTATATCAATGGAGTTTTAAAGCTTAAATTGTTTTGTATAGGTGTTGGAAGGAATGAAGAATGGTGAAAGTGAGTTTAATTTGGATTGAAGGGCATTTTGGTCATTCTATCATATTATTAGTTAAAAAAAATAATAAATAATTCCTTCTTCTTCTTATTCTTTTCTCCTTCCTCACCCTTCAAGATCAACCGGTCCCCCTCCTATTCGAAATCTCTTCCACCGCCACTCCAATTTCTAGCTCCTTCACGCTGACGCTTCGCCAGCCATCGTTGCACCCCCCCAGCCGTCGAACGACGACCACCCACGCCGCGCACTGCCTTGAACCACGACGTTTGAAGATGTTAGTTTGAATCGACACGATCTCTTCGAGTTTTCTCATTATGTTTCATCGTTAGCCGAGTTATGCATTATTTAAACATCATTCGTTGTCATTCGACAAGTCGAATCATTTCTAATCTCGTTCTTCTCAACTCCGTATCATTGGATCTAAGTTTTTAGGTGAATCTTCTTTGTTTTAATGGATTTTTTGATGAGTTTCCATTACCCATTAAGTTTTAACTCAATTTTCATAATACCCATTACTTTTTTATGCTAGATTTAAATTTTAGAAGAGTTTAAACTGCGGTCTAGCAGTTTGGAAGCTCAAAATCGGATGCTTTAGCATATTTTAGGTAAGATTCTAAGCTTTATTGAATGGGTCCTTAGAACCCATTGATTTTTTGTGCCAATATTAAGAAAACCATGGTTTATGGACGTTAGAATTCGATAATTCAGTGCCGTTAGAGCATTTTTCATTGAAGTTAGATTATTTTGCTAAGTTCTTGAATAGCCCTTGATGTCGGATGCTTATTTTGAGATTAGAAGGTAGTTAGAGTGCTCTCCGTTAAAATTATGGGTGCTTTGTTAAGTCTTTGGAAAGTTTTGGAATAATTTCATTGAAAATTTTCCTAGAGTTGAAGGTTAAAGGTTGAAAATAGACATTCCTTTAACTTTGGAGTCCACCGAGGTGTTACTTCTGTTGGGTTTTATGTCCTAAAACTTGTAATATAATCCATTGACCGTTATTAATAAAGTATTTTATTATTATATTTTCAATAAGTGTTATTAATTGTATTATTAGTTTTTTCTTAATAACCTAAATCCAATAAACTAACATCCTAAGCTGTTTGATGAGTCTTGAACAATATGTAGAGACATACGGGGATCAATGTTCATGATCAGCTTAAAGGGTCTATAGTATAGGGTTAAGGTTGGGTACCTTATCCTGGTAACACTATGGATACGACTCACTTTGTATTTGATACAAACAAATTGATCCAATGCATTCATGTACACGACATGCGAGTGAGAGTATCATATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAATCACTAG

mRNA sequence

ATGGTGACATGGCGGCCAATGTGGCATCCTCTTGACCATACACCTGGCAGTATCTACAAATTGGTATTGGAGCCTATTCTTGATTTCAAGAAACTTAAGATGACAGTAGCAAGATATGATATTGAGAAGTTTGATGGTAAGGGAGATTTTACCTTATGGAAAGCAAAGATCAAAGCCATAGTCGGCCAGCAAAAGGCACTGAAAGCTCTCACAGATCCAGAAAAACTACCTAAAATAATGATTCAAGAAGACAATGAAACTATAGAAAATGCAGCCTATAGTGCCATAGTTCTAAACCTAAGTGATAATGTCCTTAGGGAACTCATCTTATCATATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAATCACTAG

Coding sequence (CDS)

ATGGTGACATGGCGGCCAATGTGGCATCCTCTTGACCATACACCTGGCAGTATCTACAAATTGGTATTGGAGCCTATTCTTGATTTCAAGAAACTTAAGATGACAGTAGCAAGATATGATATTGAGAAGTTTGATGGTAAGGGAGATTTTACCTTATGGAAAGCAAAGATCAAAGCCATAGTCGGCCAGCAAAAGGCACTGAAAGCTCTCACAGATCCAGAAAAACTACCTAAAATAATGATTCAAGAAGACAATGAAACTATAGAAAATGCAGCCTATAGTGCCATAGTTCTAAACCTAAGTGATAATGTCCTTAGGGAACTCATCTTATCATATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAATCACTAG

Protein sequence

MVTWRPMWHPLDHTPGSIYKLVLEPILDFKKLKMTVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETIENAAYSAIVLNLSDNVLRELILSYAMSLHKTGPRNSNH
Homology
[Close]
BLAST of Pay0010046 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.9e-05
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 0 

Query: 34  MTVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETIENAAY 93
           M+  +Y++ KF+G   F+ W+ +++ ++ QQ   K L    K P  M  ED   ++  A 
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60

Query: 94  SAIVLNLSDNVLRELI 110
           SAI L+LSD+V+  +I
Sbjct: 61  SAIRLHLSDDVVNNII 76

[Close]
BLAST of Pay0010046 vs. ExPASy TrEMBL
Match: A0A1S4DV47 (uncharacterized protein LOC107990692 OS=Cucumis melo OX=3656 GN=LOC107990692 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.8e-50
Identity = 106/122 (86.89%), Postives = 109/122 (89.34%), Query Frame = 0 

Query: 1   MVTWRPMWHPLDHTPGSIYKLVLEP-----------ILDFKKLKMTVARYDIEKFDGKGD 60
           MVTWRPMWHPLDHTPGSIYKLVLEP           ILDFKKLK+ VARYDIEKFDGKGD
Sbjct: 1   MVTWRPMWHPLDHTPGSIYKLVLEPAKETQESSQIQILDFKKLKIAVARYDIEKFDGKGD 60

Query: 61  FTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETIENAAYSAIVLNLSDNVLRELI 112
           FTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNET+ENAAYSAIVLNLSD+VLRELI
Sbjct: 61  FTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETMENAAYSAIVLNLSDSVLRELI 120

[Close]
BLAST of Pay0010046 vs. ExPASy TrEMBL
Match: A0A5D3BQH4 (Transcription initiation factor TFIID subunit 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00230 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 34  MTVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETIENAAY 93
           M V RYDIEKFDGKG FTLWKAK+KAIVGQ+K LKA+ DPEKLPK M QE+ ET+ENAAY
Sbjct: 1   MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60

Query: 94  SAIVLNLSDNVLRELI 110
            AIVLNLSDNVLRE+I
Sbjct: 61  GAIVLNLSDNVLREVI 76

[Close]
BLAST of Pay0010046 vs. ExPASy TrEMBL
Match: A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.8e-17
Identity = 42/76 (55.26%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 34  MTVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETIENAAY 93
           MT  +++IEKFDG GDFTLW  +I AI+G QKALKAL DP++LP  + + + ET+E  AY
Sbjct: 1   MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 94  SAIVLNLSDNVLRELI 110
           S +++N++DNVLR++I
Sbjct: 61  STLIMNITDNVLRQVI 76

[Close]
BLAST of Pay0010046 vs. ExPASy TrEMBL
Match: A0A5A7TKQ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00510 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.2e-15
Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = 0 

Query: 34  MTVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETIENAAY 93
           MT  +++IEKFDG GD TLW  +I  I+G QKALKAL DP++LP  + + + ET+EN AY
Sbjct: 1   MTTMKFEIEKFDGNGDCTLWTKRITTILGSQKALKALKDPKELPATLTKSERETMENVAY 60

Query: 94  SAIVLNLSDNVLRE 108
             +V+N++DNVLR+
Sbjct: 61  GTLVMNITDNVLRQ 74

[Close]
BLAST of Pay0010046 vs. ExPASy TrEMBL
Match: A0A5D3CRK9 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1121G00030 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.2e-15
Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = 0 

Query: 34  MTVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETIENAAY 93
           MT  +++IEKFDG GD TLW  +I  I+G QKALKAL DP++LP  + + + ET+EN AY
Sbjct: 1   MTTMKFEIEKFDGNGDCTLWTKRITTILGSQKALKALKDPKELPATLTKSERETMENVAY 60

Query: 94  SAIVLNLSDNVLRE 108
             +V+N++DNVLR+
Sbjct: 61  GTLVMNITDNVLRQ 74

[Close]
BLAST of Pay0010046 vs. NCBI nr
Match: XP_016899859.1 (PREDICTED: uncharacterized protein LOC107990692 [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 3.7e-50
Identity = 106/122 (86.89%), Postives = 109/122 (89.34%), Query Frame = 0 

Query: 1   MVTWRPMWHPLDHTPGSIYKLVLEP-----------ILDFKKLKMTVARYDIEKFDGKGD 60
           MVTWRPMWHPLDHTPGSIYKLVLEP           ILDFKKLK+ VARYDIEKFDGKGD
Sbjct: 1   MVTWRPMWHPLDHTPGSIYKLVLEPAKETQESSQIQILDFKKLKIAVARYDIEKFDGKGD 60

Query: 61  FTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETIENAAYSAIVLNLSDNVLRELI 112
           FTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNET+ENAAYSAIVLNLSD+VLRELI
Sbjct: 61  FTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETMENAAYSAIVLNLSDSVLRELI 120

[Close]
BLAST of Pay0010046 vs. NCBI nr
Match: KAA0025506.1 (transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa] >TYK00359.1 transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 3.5e-24
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 34  MTVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETIENAAY 93
           M V RYDIEKFDGKG FTLWKAK+KAIVGQ+K LKA+ DPEKLPK M QE+ ET+ENAAY
Sbjct: 1   MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60

Query: 94  SAIVLNLSDNVLRELI 110
            AIVLNLSDNVLRE+I
Sbjct: 61  GAIVLNLSDNVLREVI 76

[Close]
BLAST of Pay0010046 vs. NCBI nr
Match: KAA0051442.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22211.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 42/76 (55.26%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 34  MTVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETIENAAY 93
           MT  +++IEKFDG GDFTLW  +I AI+G QKALKAL DP++LP  + + + ET+E  AY
Sbjct: 1   MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 94  SAIVLNLSDNVLRELI 110
           S +++N++DNVLR++I
Sbjct: 61  STLIMNITDNVLRQVI 76

[Close]
BLAST of Pay0010046 vs. NCBI nr
Match: XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 5.9e-16
Identity = 44/76 (57.89%), Postives = 59/76 (77.63%), Query Frame = 0 

Query: 34  MTVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETIENAAY 93
           MT  RY+IEKF+ K DF LWKAKIK ++ +QKAL A+TDP K PKI+ + + ETIE+ AY
Sbjct: 1   MTTTRYEIEKFEAKTDFELWKAKIKVVLRKQKALLAITDPAKYPKILFKAEKETIESNAY 60

Query: 94  SAIVLNLSDNVLRELI 110
             IVLN+ D+VLR+++
Sbjct: 61  GTIVLNVIDSVLRQIV 76

[Close]
BLAST of Pay0010046 vs. NCBI nr
Match: XP_038889933.1 (uncharacterized protein LOC120079695 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 5.9e-16
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 0 

Query: 34  MTVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETIENAAY 93
           MT  R++IEKFDGK DF LWKAKIKA++GQQKAL A+TD  K PK     + E IE  AY
Sbjct: 1   MTTTRFEIEKFDGKTDFELWKAKIKAVLGQQKALLAITDLTKYPKTFTDVEKEIIEVNAY 60

Query: 94  SAIVLNLSDNVLRELI 110
             IVLN++DNVLR+++
Sbjct: 61  GTIVLNVTDNVLRQIV 76

The following BLAST results are available for this feature:
BLAST of Pay0010046 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109784.9e-0534.21Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of Pay0010046 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DV471.8e-5086.89uncharacterized protein LOC107990692 OS=Cucumis melo OX=3656 GN=LOC107990692 PE=... [more]
A0A5D3BQH41.7e-2480.26Transcription initiation factor TFIID subunit 2-like OS=Cucumis melo var. makuwa... [more]
A0A5A7U6R25.8e-1755.26Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7TKQ13.2e-1554.05Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CRK93.2e-1554.05Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold112... [more]
BLAST of Pay0010046 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899859.13.7e-5086.89PREDICTED: uncharacterized protein LOC107990692 [Cucumis melo][more]
KAA0025506.13.5e-2480.26transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa] ... [more]
KAA0051442.11.2e-1655.26Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
XP_038885928.15.9e-1657.89uncharacterized protein LOC120076236 [Benincasa hispida][more]
XP_038889933.15.9e-1660.53uncharacterized protein LOC120079695 [Benincasa hispida][more]
BLAST of Pay0010046 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0010046.1Pay0010046.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
molecular_function GO:0003824 catalytic activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003743 translation initiation factor activity