Pay0009722 (gene) Melon (Payzawat) v1

Overview
NamePay0009722
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionAnaphase-promoting complex subunit 4
Locationchr08: 20486739 .. 20488551 (+)
RNA-Seq ExpressionPay0009722
SyntenyPay0009722
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGGACTTGTTTCTGGAGATACTGGTTGCATTGACGACTCTGAAGACTCATTTACGGAGTTGTCAAATTCTTCACATCAGCGGTTTAACATCTTGTGCAGTGGTGACAAAGAAGGAAGCATCTGTTTCAGCATATTTGGCGTTTTTCCAATTGGAAAAATAGTAAGTTAACTGCGATTATATTTATAACCACAACCTCAAACCTTTCTTCTCTCTTTTCAAAAAATAGGTACTTAACTGGTTCTTTGCTCGCTTCATCAGTATAGTTCTTGAATACATTGATTCACTTGTATGAAAATTCAATGTAGTATGTTAATTTCAAAATTGTATATTTCTATTTTGATTGTGATCGCTTCTTGATACTCGGTGTATAAAGACCGAAACCTGACCCCTAGCTTTCCTATCCTCTGCTGGACGAAAAAGCTAGGGTTCAGGATTAGGTCTTGTACATTTCAAGTGATCAGAAAGTAACGTCAATCAGAACAAAATATACAGTTTTGAAATTAAAATACTACTTTAAATTGTATTACAGGAGAAACGAAATATTTTTATCAGTGTATTTGAGAACTATACTGATGAATGGAGCAAAGTTATGAGTTAGTAATAATTTTCCAAAGAGAGATAAGAAAGGTTAGTGGTTATATGCGTGTATAATTTCTCAATCCTAAAATTATCTGTTAAATAAAGGTTTTTGGTTCTGCAGGTGTGTTCTAGTTTTGATTTTGACATTGCTTTATTGCTTCTAATATATGTTGAAGTTATGATTTTTTTTTAGAGTGCAATGCATAGATTAATTAAATTTATATTAAACTTTTGATACTAAATCATGACGAAGGGCAATATTTCATCTGTCAAAAGACTATCTTTATGCTATTTAATGACAACTTAGTGATTCAACTTTTGGTGCAACACTAAAATTTAAATTCTTGCTTTGGACAATTTTAGTTCAACAAAACTCAATATGTCAACATCACAGCGATATTGTCACTTCCTCTTTAGACCTCCGTGTTTTTCACTTTGTTATTGGGTTCTTACGTGTTACGTCGTTCGATGCACCCTTGGCTAAGAATGATTGTATCAACTTCAATATTTTTGGTTTCATATCAGATTGATACAAGGACTTTATACAGTCAACTCGAGTTGGATGAAGTGCGAATGGAGCTTGTTGATTTTTTGGTTGGCCACGTGATTATGGTGATAGCTAAGTTCTTTCGGGTCAGATGGACAATTTTTATTGATACTGGATATAGGTGAACTAGTTTTGTTGATACTGGATATAGGTGAAAGACAAGTTTTGATATGGTACACCTTTAGGCTACATAGATGGAAAGTTTAAGCTATTATTAGAAGTTTAGGCTACTCGTATATATATATATATGTTGATATTTTGTTGATACTGGATATAGGTGAACTTCAAAACAGGTGCAAGATAAATTATATGGATAATTTAAAATATATAATTTTTTTTATATATATATATAAATTTCTTTTGTAAAACTAAAAAAAAACAAAACTCCATTTATTCTTGACACCGGATTACTTGATGCATAAAAACTGTAAAAAAAGCTTATATACTTGATGCTTAAAAACTGTCAAGTAAACTTGTTTTATTAGTTTTAATTTTCATGTCCGTGGAATTTTCAAATTAATTTGGATTTCTTTTGTAGCATATTTAGACATATCTCTCTATACGTGTGGTTTAGTTTTTCCATCTACTGTCATGAAATGCCTTAGTTTATCTTGTTTCTAACCGAAAGTCTATTTTTCTCTATCATACAGGCCCATACTCACTTTGTACATCTTTGACTAA

mRNA sequence

ATGCCTGGACTTGTTTCTGGAGATACTGGTTGCATTGACGACTCTGAAGACTCATTTACGGAGTTGTCAAATTCTTCACATCAGCGGTTTAACATCTTGTGCAGTGGTGACAAAGAAGGAAGCATCTGTTTCAGCATATTTGGCGTTTTTCCAATTGGAAAAATAATTGATACAAGGACTTTATACAGTCAACTCGAGTTGGATGAAGTGCGAATGGAGCTTGTTGATTTTTTGGTTGGCCACGTGATTATGGTGATAGCTAAGTTCTTTCGGGTCAGATGGACAATTTTTATTGATACTGGATATAGGCCCATACTCACTTTGTACATCTTTGACTAA

Coding sequence (CDS)

ATGCCTGGACTTGTTTCTGGAGATACTGGTTGCATTGACGACTCTGAAGACTCATTTACGGAGTTGTCAAATTCTTCACATCAGCGGTTTAACATCTTGTGCAGTGGTGACAAAGAAGGAAGCATCTGTTTCAGCATATTTGGCGTTTTTCCAATTGGAAAAATAATTGATACAAGGACTTTATACAGTCAACTCGAGTTGGATGAAGTGCGAATGGAGCTTGTTGATTTTTTGGTTGGCCACGTGATTATGGTGATAGCTAAGTTCTTTCGGGTCAGATGGACAATTTTTATTGATACTGGATATAGGCCCATACTCACTTTGTACATCTTTGACTAA

Protein sequence

MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKIIDTRTLYSQLELDEVRMELVDFLVGHVIMVIAKFFRVRWTIFIDTGYRPILTLYIFD
Homology
[Close]
BLAST of Pay0009722 vs. ExPASy Swiss-Prot
Match: O65418 (Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=APC4 PE=2 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 4.2e-16
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKI 56
           MPGLV+GD+  +DD EDS  ELSN+S ++FNILC+GD++G+ICFSIFG+F IGKI
Sbjct: 148 MPGLVAGDSSFMDDGEDSLAELSNTSFRKFNILCTGDRDGNICFSIFGIFQIGKI 202

[Close]
BLAST of Pay0009722 vs. ExPASy TrEMBL
Match: A0A1S4DV04 (uncharacterized protein LOC103486068 OS=Cucumis melo OX=3656 GN=LOC103486068 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKIIDTRT 60
           MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKIIDTRT
Sbjct: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKIIDTRT 60

Query: 61  LYSQLELDEVRMELVDFLVGHVIMVIAKFFRVRWTIFIDTGYRPILTLYIFD 113
           LYSQLELDEVRMELVDFLVGHVIMVIAKFF VRWTIFIDTGYRPILTLYIFD
Sbjct: 61  LYSQLELDEVRMELVDFLVGHVIMVIAKFFWVRWTIFIDTGYRPILTLYIFD 112

[Close]
BLAST of Pay0009722 vs. ExPASy TrEMBL
Match: A0A5A7SWD2 (Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00480 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKII 57
           MPGLVSGDTGCIDDSEDSFTELSNSSHQ FNILCSGDKEGSICFSIFGVFPIGKI+
Sbjct: 87  MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIV 142

[Close]
BLAST of Pay0009722 vs. ExPASy TrEMBL
Match: A0A5D3BMY3 (Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00330 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKI 56
           MPGLVSGDTG IDDSEDSFTELSNSS QRFNILCSGDK+GSICFSIFGVFPIGKI
Sbjct: 215 MPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILCSGDKDGSICFSIFGVFPIGKI 269

[Close]
BLAST of Pay0009722 vs. ExPASy TrEMBL
Match: A0A5A7TZ68 (Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001730 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKI 56
           MPGLVSGDTG IDDSEDSFTELSNSS QRFNILCSGDK+GSICFSIFGVFPIGKI
Sbjct: 209 MPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILCSGDKDGSICFSIFGVFPIGKI 263

[Close]
BLAST of Pay0009722 vs. ExPASy TrEMBL
Match: A0A1S3CJ41 (Anaphase-promoting complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103501540 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKI 56
           MPGLVSGDTG IDDSEDSFTELSNSS QRFNILCSGDK+GSICFSIFGVFPIGKI
Sbjct: 145 MPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILCSGDKDGSICFSIFGVFPIGKI 199

[Close]
BLAST of Pay0009722 vs. NCBI nr
Match: XP_016899540.1 (PREDICTED: uncharacterized protein LOC103486068 [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 4.4e-55
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKIIDTRT 60
           MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKIIDTRT
Sbjct: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKIIDTRT 60

Query: 61  LYSQLELDEVRMELVDFLVGHVIMVIAKFFRVRWTIFIDTGYRPILTLYIFD 113
           LYSQLELDEVRMELVDFLVGHVIMVIAKFF VRWTIFIDTGYRPILTLYIFD
Sbjct: 61  LYSQLELDEVRMELVDFLVGHVIMVIAKFFWVRWTIFIDTGYRPILTLYIFD 112

[Close]
BLAST of Pay0009722 vs. NCBI nr
Match: KAA0034918.1 (anaphase-promoting complex subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.9e-22
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKII 57
           MPGLVSGDTGCIDDSEDSFTELSNSSHQ FNILCSGDKEGSICFSIFGVFPIGKI+
Sbjct: 87  MPGLVSGDTGCIDDSEDSFTELSNSSHQLFNILCSGDKEGSICFSIFGVFPIGKIV 142

[Close]
BLAST of Pay0009722 vs. NCBI nr
Match: XP_008463366.1 (PREDICTED: anaphase-promoting complex subunit 4 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-20
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKI 56
           MPGLVSGDTG IDDSEDSFTELSNSS QRFNILCSGDK+GSICFSIFGVFPIGKI
Sbjct: 145 MPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILCSGDKDGSICFSIFGVFPIGKI 199

[Close]
BLAST of Pay0009722 vs. NCBI nr
Match: KAA0046621.1 (anaphase-promoting complex subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-20
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKI 56
           MPGLVSGDTG IDDSEDSFTELSNSS QRFNILCSGDK+GSICFSIFGVFPIGKI
Sbjct: 209 MPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILCSGDKDGSICFSIFGVFPIGKI 263

[Close]
BLAST of Pay0009722 vs. NCBI nr
Match: TYK00082.1 (anaphase-promoting complex subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-20
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKI 56
           MPGLVSGDTG IDDSEDSFTELSNSS QRFNILCSGDK+GSICFSIFGVFPIGKI
Sbjct: 215 MPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILCSGDKDGSICFSIFGVFPIGKI 269

[Close]
BLAST of Pay0009722 vs. TAIR 10
Match: AT4G21530.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-17
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 1   MPGLVSGDTGCIDDSEDSFTELSNSSHQRFNILCSGDKEGSICFSIFGVFPIGKI 56
           MPGLV+GD+  +DD EDS  ELSN+S ++FNILC+GD++G+ICFSIFG+F IGKI
Sbjct: 148 MPGLVAGDSSFMDDGEDSLAELSNTSFRKFNILCTGDRDGNICFSIFGIFQIGKI 202

The following BLAST results are available for this feature:
BLAST of Pay0009722 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O654184.2e-1667.27Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=APC4 PE=... [more]
BLAST of Pay0009722 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DV042.1e-5599.11uncharacterized protein LOC103486068 OS=Cucumis melo OX=3656 GN=LOC103486068 PE=... [more]
A0A5A7SWD21.4e-2296.43Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BMY31.7e-2094.55Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TZ681.7e-2094.55Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3CJ411.7e-2094.55Anaphase-promoting complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103501540 PE=... [more]
BLAST of Pay0009722 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899540.14.4e-5599.11PREDICTED: uncharacterized protein LOC103486068 [Cucumis melo][more]
KAA0034918.12.9e-2296.43anaphase-promoting complex subunit 4 [Cucumis melo var. makuwa][more]
XP_008463366.13.5e-2094.55PREDICTED: anaphase-promoting complex subunit 4 [Cucumis melo][more]
KAA0046621.13.5e-2094.55anaphase-promoting complex subunit 4 [Cucumis melo var. makuwa][more]
TYK00082.13.5e-2094.55anaphase-promoting complex subunit 4 [Cucumis melo var. makuwa][more]
BLAST of Pay0009722 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G21530.13.0e-1767.27Transducin/WD40 repeat-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0009722.1Pay0009722.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031145 anaphase-promoting complex-dependent catabolic process
biological_process GO:0051301 cell division
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0048481 plant ovule development
biological_process GO:0045842 positive regulation of mitotic metaphase/anaphase transition
biological_process GO:0070979 protein K11-linked ubiquitination
cellular_component GO:0005680 anaphase-promoting complex
cellular_component GO:0034399 nuclear periphery