Pay0009507 (gene) Melon (Payzawat) v1

Overview


Name	Pay0009507
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr09: 11359414 .. 11360641 (+)
RNA-Seq Expression	Pay0009507
Synteny	Pay0009507

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATGCCGCAACCGTTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCAATTGTTTCCCTTCCGCCCTTGCACAATGCTTTGGTTGATGGCGAAACTTTTGCTACACTGAACATCTCTATTGAGGAAGAGCAGAATAAAATATTTCTTACATTTGAGGCTTCAAGTAAGTATACATATACGTATATTATAATACCCTTTTTCTTCGTTTCTTTTATTAAAAAATGAATCTTGGTTCTCAATAGAGATTATTATTTTTTCTATATTTCTTGATTCCTTCATACATTCTAAGAATTTGTTTATGAACATGCATGTTTGGACATTATGTGGATTTTTTGTTTTCATAAAATATGAATCTTGTTTAAATAATTTTCATGTTTAGATCATTAGAAATCGATTCTTGCAACTTCTTTAGTTAAAAAGTTCATCATATATCAAATAATTGAGCATATTCTATACTTCAATCTTGCTTATTTTTTTTTTTAAAAATTAATATTTAATTCATTAAAAGTATCATTGCAGTCTTTATATTTTGAATTTCATTACATTTTAATTAGTCGTTGTTGAACTCTCACTAAATCTCAAATTAAGTTGGTGTCATTAAATTTGTTGATTATTGTATTTGTATTCATATGATATGAATTATTATTATTAATTATTAGTTAATCAATTTTGATAAAAAAAAATGAAATTCAAATGTCAGTTCATATGCAAATTATAATTATTACAAGTAATAAATAACCTTCTCATCTTTTGACTATATTAATATCAATCTTTAAGGTCCTTCAACATTACCATTGAATCGTGAATTGACATTCGTCGTGCCTATGGAAGATTGGTCTCCTGGACCAGTTAAATTTGATGGAAAAATTTTCTCTATTGAGTCAGAACTGTTTACCGATATTATCCAACTATTTTCTGCCTTCAATGAAGCTGATGCAAGTAATGCAATTCTTTTTCCATATATTTTACTTTTAACAAAAGTGGTTAATTTAATAATATATATATATATATATATATATATATATATATATTCCTAAAACCATTTTTATTTTGTACAGTTTTGATTACTGCATTTGGTTCAAAAGTCACCTTCTCAGTTCCTCCATTTGCAGAGACACCTCTTACCGAAGAGGTATGTTCTATGAACGTTTTTTTTTTAAAGAATTACTTTAATTTTCATTAATATATTTGTATATAGTTATTTTTGTAGATAAGCTGA

mRNA sequence

ATGTCTATGCCGCAACCGTTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCAATTGTTTCCCTTCCGCCCTTGCACAATGCTTTGGTTGATGGCGAAACTTTTGCTACACTGAACATCTCTATTGAGGAAGAGCAGAATAAAATATTTCTTACATTTGAGGCTTCAAGTCCTTCAACATTACCATTGAATCGTGAATTGACATTCGTCGTGCCTATGGAAGATTGGTCTCCTGGACCAGTTAAATTTGATGGAAAAATTTTCTCTATTGAGTCAGAACTGTTTACCGATATTATCCAACTATTTTCTGCCTTCAATGAAGCTGATGCAATCACCTTCTCAGTTCCTCCATTTGCAGAGACACCTCTTACCGAAGAGATAAGCTGA

Coding sequence (CDS)

ATGTCTATGCCGCAACCGTTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCAATTGTTTCCCTTCCGCCCTTGCACAATGCTTTGGTTGATGGCGAAACTTTTGCTACACTGAACATCTCTATTGAGGAAGAGCAGAATAAAATATTTCTTACATTTGAGGCTTCAAGTCCTTCAACATTACCATTGAATCGTGAATTGACATTCGTCGTGCCTATGGAAGATTGGTCTCCTGGACCAGTTAAATTTGATGGAAAAATTTTCTCTATTGAGTCAGAACTGTTTACCGATATTATCCAACTATTTTCTGCCTTCAATGAAGCTGATGCAATCACCTTCTCAGTTCCTCCATTTGCAGAGACACCTCTTACCGAAGAGATAAGCTGA

Protein sequence

MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAITFSVPPFAETPLTEEIS

Homology

[Close]

BLAST of Pay0009507 vs. ExPASy TrEMBL
Match: A0A5A7TVD7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001420 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.1e-63
Identity = 129/138 (93.48%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS 60
           MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS
Sbjct: 2   MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS 61

Query: 61  TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAI-------- 120
           TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAI        
Sbjct: 62  TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGSK 121

Query: 121 -TFSVPPFAETPLTEEIS 130
            TFSVPPFAETPLTEEIS
Sbjct: 122 VTFSVPPFAETPLTEEIS 139

[Close]

BLAST of Pay0009507 vs. ExPASy TrEMBL
Match: A0A5D3DSC2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00490 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.0e-62
Identity = 127/136 (93.38%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 1   MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS 60
           MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS
Sbjct: 2   MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS 61

Query: 61  TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAI-------- 120
           TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAI        
Sbjct: 62  TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGSK 121

Query: 121 -TFSVPPFAETPLTEE 128
            TFSVPPFAETPLTEE
Sbjct: 122 VTFSVPPFAETPLTEE 137

[Close]

BLAST of Pay0009507 vs. ExPASy TrEMBL
Match: A0A0A0KB76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.8e-24
Identity = 60/108 (55.56%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 3   MPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTL 62
           +P+PLFAEY V R+HI  VSL  LH AL  G+T+++L I ++EEQN I L FE S  S +
Sbjct: 53  IPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPV 112

Query: 63  PLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEAD 111
           P+ R++ F VPMEDWS G + FD K FSIES+LF DII  F  +NE D
Sbjct: 113 PMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVD 160

[Close]

BLAST of Pay0009507 vs. ExPASy TrEMBL
Match: A0A0A0LIE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 3   MPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTL 62
           MP PLF EYSVDRNHIS +SL    NAL++G+++++++I + E QN I   FE   PS L
Sbjct: 53  MPHPLFVEYSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE---PSIL 112

Query: 63  PLNR--ELTF-VVPMED 77
             +R  ++TF  VP E+
Sbjct: 113 ITSRGSQITFSAVPREE 126

[Close]

BLAST of Pay0009507 vs. ExPASy TrEMBL
Match: A0A6J1KZ05 (uncharacterized protein LOC111498887 OS=Cucurbita maxima OX=3661 GN=LOC111498887 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 8   FAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRE 67
           FA YSVDRNH S VSL   ++A+ DG  F+++ I   E  +++ L FE+S+ + L ++R 
Sbjct: 57  FANYSVDRNHSSRVSLQSFYDAMYDGIFFSSMTIHFPETTSRMVLQFESSNHTKLKMHRV 116

Query: 68  LTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAF 107
           L  + P ++   G ++ D + FSI S+ F DII    +F
Sbjct: 117 LK-LSPSQEEELGQIQHD-RFFSIISQDFRDIITGLPSF 153

[Close]

BLAST of Pay0009507 vs. NCBI nr
Match: KAA0047513.1 (hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 129/138 (93.48%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS 60
           MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS
Sbjct: 2   MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS 61

Query: 61  TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAI-------- 120
           TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAI        
Sbjct: 62  TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGSK 121

Query: 121 -TFSVPPFAETPLTEEIS 130
            TFSVPPFAETPLTEEIS
Sbjct: 122 VTFSVPPFAETPLTEEIS 139

[Close]

BLAST of Pay0009507 vs. NCBI nr
Match: TYK26483.1 (hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 127/136 (93.38%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 1   MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS 60
           MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS
Sbjct: 2   MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS 61

Query: 61  TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAI-------- 120
           TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAI        
Sbjct: 62  TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGSK 121

Query: 121 -TFSVPPFAETPLTEE 128
            TFSVPPFAETPLTEE
Sbjct: 122 VTFSVPPFAETPLTEE 137

[Close]

BLAST of Pay0009507 vs. NCBI nr
Match: XP_031736681.1 (uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharacterized protein LOC116403863 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 93/136 (68.38%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 1   MSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPS 60
           MS+PQPLF EYSVDRNHIS +SL   ++AL++ +TFA LNI ++E+QNKI LTFE SSPS
Sbjct: 51  MSLPQPLFVEYSVDRNHISRISLLSFYSALLECQTFAALNIHLQEDQNKILLTFEPSSPS 110

Query: 61  TLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAI-------- 120
           TLPLNRELTFVVPMEDWS   V FDGK+FSIES+LF DIIQLFS+F EA+ I        
Sbjct: 111 TLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFGSK 170

Query: 121 -TFSVPPFAETPLTEE 128
            +FS+ PFAETPLTEE
Sbjct: 171 VSFSILPFAETPLTEE 186

[Close]

BLAST of Pay0009507 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_005027 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-24
Identity = 60/108 (55.56%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 3   MPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTL 62
           +P+PLFAEY V R+HI  VSL  LH AL  G+T+++L I ++EEQN I L FE S  S +
Sbjct: 53  IPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPV 112

Query: 63  PLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEAD 111
           P+ R++ F VPMEDWS G + FD K FSIES+LF DII  F  +NE D
Sbjct: 113 PMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVD 160

[Close]

BLAST of Pay0009507 vs. NCBI nr
Match: KAE8652085.1 (hypothetical protein Csa_018729, partial [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 9.0e-20
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 59  PSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAI------ 118
           PSTLPLNRELTFVVPMEDWS   V FDGK+FSIES+LF DIIQLFS+F EA+ I      
Sbjct: 1   PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFG 60

Query: 119 ---TFSVPPFAETPLTEE 128
              +FS+ PFAETPLTEE
Sbjct: 61  SKVSFSILPFAETPLTEE 78

The following BLAST results are available for this feature:

BLAST of Pay0009507 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0009507 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TVD7	7.1e-63	93.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DSC2	6.0e-62	93.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KB76	3.8e-24	55.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1	[more]
A0A0A0LIE0	8.5e-08	48.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1	[more]
A0A6J1KZ05	1.6e-06	38.38	uncharacterized protein LOC111498887 OS=Cucurbita maxima OX=3661 GN=LOC111498887...	[more]

BLAST of Pay0009507 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047513.1	1.5e-62	93.48	hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa]	[more]
TYK26483.1	1.2e-61	93.38	hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa]	[more]
XP_031736681.1	2.2e-42	68.38	uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharact...	[more]
KGN45637.1	7.9e-24	55.56	hypothetical protein Csa_005027 [Cucumis sativus]	[more]
KAE8652085.1	9.0e-20	70.51	hypothetical protein Csa_018729, partial [Cucumis sativus]	[more]

BLAST of Pay0009507 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..119 e-value: 2.6E-6 score: 28.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0009507.1	Pay0009507.1	mRNA