Pay0009071 (gene) Melon (Payzawat) v1

Overview


Name	Pay0009071
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	E3 ubiquitin-protein ligase COP1-like
Location	chr12: 16736875 .. 16739669 (+)
RNA-Seq Expression	Pay0009071
Synteny	Pay0009071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCAATTCCTACCGGAGGATGCCAATGCTGCTGCTGCTACTCCCACTCCTACTGCCGCCGCCTCTCATTCTGATACCGATGATTTGGATAAGGATATGCTTTGCCCTATTTGCATGCAGATCATTAAGGATGCCTTTCTCACTACTTGTGGACATAGCTTTTGTTATATGTGTATTGTTACTCATCTTCGGAATAAGAGTGATTGCCCTTGTTGCGCTCATTTTCTCCGGAGTACCAGCATTTTCCCCAATATTTTGCTTGATAAGGTTTGATCGTCTTCACTTCTTTTTTTCTTTTTTTTATTTCACTTGTTTCTTGAATTGGATCTTTATTCCTTTCGTTTTGTTTTGAATTTTGATTGCTGTCTCTATTTGATTTTATGCGATTGTTAGTTGATAATCACATCTTAGTTTGTAGTTTTCAAGTACTTATGGGTGACTAAGTGCCTAAGATTTTGACACTTTGACTGTTCTTGCATTGGAGACCGTTCTATACTGTGAGAGATTGATCGTTTAATGCTATTTTTATATAATAATTAAACCATTCCATTATGGGCGAGATTATCTTTCTTTAATTTCTTTGATTGTTGCTGGTCTTCCCCTAGATCTGTGAAGTTTCTTAGGATATTTTTGTTATGCAATCTAGATTCTATATGTATTGGTGAATGGTTGTGGGCTTAGGTTATTATATATAGAAGAATTTGCTCTCTTTTGGTAAAAAGTTGTTTACTGTGGTCCTAATTAGTGTGAATTAGTCTTATAGGTGTGATTATTTGATTCCTGTGGAGTTTTGAATCTTAACTATAGAGTTACATTAAAAAAGAAAGTTAAAATTCCTATTATATTAGTCTTTCATGTTATTTAAACTTATGGTGGTATCTTTTTTGTTTTAAAAATAAATTCGTATGATTACCAATATAAATTTTTTTTATTTGAAAATGTGGGTGTGGGGGTGGGTGAAAATTATAGTGAGTTCTACTAAATGGAGTTTAGATTAGGTAGTGAGTGATCTGTGATTCTGTTTTATAGGTTGCTATGCATAATTTACATGTTCATTAATCAATAATAATAGTTGAGATTTCATAATATAATAATTTTGTTATTAGAACTATTCTTGTGGTTTATAAAATATATTATCAAACACAGTATGAACATTTTCTTATTTTGGAATCCAATTTTGAAATATGCTACAAAATACATCCAAAAGTATTGAAAACATGGAATACATTTTTTTTTAACTGAAAACACATTTTTTTAATTGAATCTCTTGTTGTTTTATATTTGTCTTCAGATCACTAACCGTATGCAGTGTTCTTTTAAAGCTCAAGGGGCAATCAAGCGCAATTGTCTTCTAGGGCTTAAGCGCAAGATGCAAAAGAAAGTGCGGACTTTGTTTTTCATGAGGACTATATAAAAAAGTTCTACATTAAGAAGAGACAGCAAATCATAATTGAAGTGGAAATATGAAAAAAAGAAAAGATCCTTTAACGCAAGAAATTTTGCATTTAGGCTTAGTAAATTTGATTTTTCTAGTTAATAAATAAGGAAAACCCCTAATTATTACTGTTTAAGGAAATAATAATAAAGCCCCAAGGTGTAGGCTTTTGAGCCTTAGGGCTTCATGAAAGGGCTGTGCCTGCGGCACGCCTTATTTTATGAGCCTCACCTTCAAGGCAAGGCACCAGACCTAGATGTCGAGCCTCGGCACACACCTGAGAGTGCTTTTCAAAACACTGACCATGTGTAGCTTTACGTTACACTTGGAGCAAACTGTTTTGCATGTCATCTAAGCTATGGCTTTATAATTTGTGACATAGGGTACTAACATGGTAGAAGTTCCCAAAATCTTCACCATGCAGTAGTTTAGCTTGATGCTACTTCATTATGCAGTAGTTTAGCTTTATGCTAAAGTATTGCAACGTTTTATATTTAGTGTCTCATGCAATGTTAAATTTCCAATTATTCTGATGATACCTTGATCACATATTCATTTCAACTGAATGATTATGCAATATTGCATTCATAAAAAAAGGGGTCTCTTTTTCAGAAAAATAAAATAAATAAATAAATAAATAAAAGAAAAAAAAATAAGGGGTTGAATTTTCCAATTTGACCTTATGGTTTGGACAAAGTTAGGATTTAGTCTATGTGGTTTTAACAAACCATAAAGGATAAATTGAAGTTATATGGACTGAATTCTAACCTTTTTGAAGGACCAAGTTTGTAAATTAACCTAAAAAATGATTATGCAATGATACAAATCACGTTCTTAACCTAAATAATGATTATGCGATGATACAAATCAACATTCAATTTAGAATATTTCAGTTCAAACAAGGAGTAAGGATTCATATCTGGAAGGGAGGTTTTCCAATGTCTCGCCTAGTTGAACTATGTTCAAGTTGGTTTTTATAATTGAATATTTTGGCTCTAATATTTCAGTAATATCATGGAGGCTTCTTGTTGAAATTAAATTCTTATGCCCTTGTCTCGACTTTATTTCTAATGATTGTGTCATGATGTTTTTGTAATTCTAAATTGCATTCTTGAATTATGACATTGCAATGCATCTTCATGGTTACTTGCGATCATTTTTGCAGTTGTTAAAGAAAACTTCTGCTCGTCAGATAAAGAAGACTACATCCCCATTTGGATATCTTCAACAGGCATTACAAAAGGTCAGCAACAATTTCATTACATATATATACACTATATTTTTCTTTATTCAGAATTACAAATCACCTCATCAATATGGAATATGCATGGCTTTTGCATCATTAGCTTCAACATAG

mRNA sequence

ATGCCTCAATTCCTACCGGAGGATGCCAATGCTGCTGCTGCTACTCCCACTCCTACTGCCGCCGCCTCTCATTCTGATACCGATGATTTGGATAAGGATATGCTTTGCCCTATTTGCATGCAGATCATTAAGGATGCCTTTCTCACTACTTGTGGACATAGCTTTTGTTATATGTGTATTGTTACTCATCTTCGGAATAAGAGTGATTGCCCTTGTTGCGCTCATTTTCTCCGGAGTACCAGCATTTTCCCCAATATTTTGCTTGATAAGTTGTTAAAGAAAACTTCTGCTCGTCAGATAAAGAAGACTACATCCCCATTTGGATATCTTCAACAGGCATTACAAAAGAATTACAAATCACCTCATCAATATGGAATATGCATGGCTTTTGCATCATTAGCTTCAACATAG

Coding sequence (CDS)

ATGCCTCAATTCCTACCGGAGGATGCCAATGCTGCTGCTGCTACTCCCACTCCTACTGCCGCCGCCTCTCATTCTGATACCGATGATTTGGATAAGGATATGCTTTGCCCTATTTGCATGCAGATCATTAAGGATGCCTTTCTCACTACTTGTGGACATAGCTTTTGTTATATGTGTATTGTTACTCATCTTCGGAATAAGAGTGATTGCCCTTGTTGCGCTCATTTTCTCCGGAGTACCAGCATTTTCCCCAATATTTTGCTTGATAAGTTGTTAAAGAAAACTTCTGCTCGTCAGATAAAGAAGACTACATCCCCATTTGGATATCTTCAACAGGCATTACAAAAGAATTACAAATCACCTCATCAATATGGAATATGCATGGCTTTTGCATCATTAGCTTCAACATAG

Protein sequence

MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQKNYKSPHQYGICMAFASLAST

Homology

[Close]

BLAST of Pay0009071 vs. ExPASy Swiss-Prot
Match: P93471 (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-36
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 29  DLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRSTSIFPNILL 88
           DLDKD LCPICMQIIKDAFLT CGHSFCYMCI+THLRNKSDCPCC H+L ++++FPN LL
Sbjct: 40  DLDKDFLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNSNLFPNFLL 99

Query: 89  DKLLKKTSARQIKKTTSPFGYLQQALQK 117
           DKLLKKTS RQI KT SP  + +QA+QK
Sbjct: 100 DKLLKKTSDRQISKTASPVEHFRQAVQK 127

[Close]

BLAST of Pay0009071 vs. ExPASy Swiss-Prot
Match: P43254 (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-34
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 20  AAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRS 79
           +  S     DLDKD+LCPICMQIIKDAFLT CGHSFCYMCI+THLRNKSDCPCC+  L +
Sbjct: 36  SGGSEIGAPDLDKDLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTN 95

Query: 80  TSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 117
             ++PN LLDKLLKKTSAR + KT SP    ++ALQ+
Sbjct: 96  NQLYPNFLLDKLLKKTSARHVSKTASPLDQFREALQR 132

[Close]

BLAST of Pay0009071 vs. ExPASy Swiss-Prot
Match: Q8NHY2 (E3 ubiquitin-protein ligase COP1 OS=Homo sapiens OX=9606 GN=COP1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.4e-11
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 28  DDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRSTS-IFPNI 87
           +D   D +CPIC  +I++A++T CGHSFCY CI   L + + CP C + + +   ++PN 
Sbjct: 128 EDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNF 187

Query: 88  LLDKLLKKTSAR 99
           L+++L+ K   R
Sbjct: 188 LVNELILKQKQR 199

[Close]

BLAST of Pay0009071 vs. ExPASy Swiss-Prot
Match: Q9R1A8 (E3 ubiquitin-protein ligase COP1 OS=Mus musculus OX=10090 GN=Cop1 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 8.4e-11
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 28  DDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRSTS-IFPNI 87
           +D   D +CPIC  +I++A++T CGHSFCY CI   L + + CP C + + +   ++PN 
Sbjct: 130 EDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNF 189

Query: 88  LLDKLLKKTSAR 99
           L+++L+ K   R
Sbjct: 190 LVNELILKQKQR 201

[Close]

BLAST of Pay0009071 vs. ExPASy Swiss-Prot
Match: O70263 (E3 ubiquitin-protein ligase LNX OS=Mus musculus OX=10090 GN=Lnx1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07
Identity = 33/105 (31.43%), Postives = 49/105 (46.67%), Query Frame = 0


Query: 27  TDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDC-----PCCAHFLRSTS 86
           T+D+D D++C IC+Q + D   T CGH++C +C+   L  K  C     P      + +S
Sbjct: 36  TEDVDDDLICHICLQALLDPLDTPCGHTYCTLCLTNFLVEKDFCPVDRKPVVLQHCKKSS 95

Query: 87  IFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQKNYKSPHQYGI 127
           I  N LL+KLL      +          LQ   Q + K    YG+
Sbjct: 96  ILVNKLLNKLLVTCPFTEHCTEVLQRCDLQHHFQTSCKGASHYGL 140

[Close]

BLAST of Pay0009071 vs. ExPASy TrEMBL
Match: A0A5A7TIH5 (E3 ubiquitin-protein ligase COP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00010 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.5e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI 60
           MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI
Sbjct: 47  MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI 106

Query: 61  VTHLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 117
           VTHLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK
Sbjct: 107 VTHLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 162

[Close]

BLAST of Pay0009071 vs. ExPASy TrEMBL
Match: A0A1S3C954 (E3 ubiquitin-protein ligase COP1-like OS=Cucumis melo OX=3656 GN=LOC103498239 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.5e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI 60
           MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI
Sbjct: 47  MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI 106

Query: 61  VTHLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 117
           VTHLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK
Sbjct: 107 VTHLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 162

[Close]

BLAST of Pay0009071 vs. ExPASy TrEMBL
Match: A0A5D3CLL8 (E3 ubiquitin-protein ligase COP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00900 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.6e-55
Identity = 116/146 (79.45%), Postives = 116/146 (79.45%), Query Frame = 0


Query: 1   MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI 60
           MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI
Sbjct: 47  MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI 106

Query: 61  VTHLRNKSDCPCCAHFLRSTSIFPNILLD------------------------------K 117
           VTHLRNKSDCPCCAHFLRSTSIFPNILLD                              K
Sbjct: 107 VTHLRNKSDCPCCAHFLRSTSIFPNILLDKITNRMQCSFKAQGAIKRNCLLGLKRKMQKK 166

[Close]

BLAST of Pay0009071 vs. ExPASy TrEMBL
Match: A0A0A0LYH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699620 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.2e-52
Identity = 106/117 (90.60%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 2   PQFLPEDANAAA--ATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMC 61
           PQF P+ ANAAA   TPTPT A SHS+TDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMC
Sbjct: 49  PQFQPDAANAAAPTPTPTPTTAPSHSNTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMC 108

Query: 62  IVTHLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 117
           IVTHLRNKSDCPCCAHFLRS SIFPNILLDKLLKKTSARQIKKT SPFGYLQQALQK
Sbjct: 109 IVTHLRNKSDCPCCAHFLRSNSIFPNILLDKLLKKTSARQIKKTASPFGYLQQALQK 165

[Close]

BLAST of Pay0009071 vs. ExPASy TrEMBL
Match: A0A6J1CL47 (E3 ubiquitin-protein ligase COP1-like OS=Momordica charantia OX=3673 GN=LOC111012608 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.0e-43
Identity = 91/111 (81.98%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 6   PEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLR 65
           PE   A        A AS ++++DLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLR
Sbjct: 40  PEAMAAELEAGELNATASEANSEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLR 99

Query: 66  NKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 117
           NKSDCPCC HFLRS SIFPNILLDKLLKKTSARQIKKTTSPFGYL QALQK
Sbjct: 100 NKSDCPCCGHFLRSNSIFPNILLDKLLKKTSARQIKKTTSPFGYLHQALQK 150

[Close]

BLAST of Pay0009071 vs. NCBI nr
Match: XP_008458987.1 (PREDICTED: E3 ubiquitin-protein ligase COP1-like [Cucumis melo] >KAA0043144.1 E3 ubiquitin-protein ligase COP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 9.4e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI 60
           MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI
Sbjct: 47  MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI 106

Query: 61  VTHLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 117
           VTHLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK
Sbjct: 107 VTHLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 162

[Close]

BLAST of Pay0009071 vs. NCBI nr
Match: TYK12320.1 (E3 ubiquitin-protein ligase COP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 5.3e-55
Identity = 116/146 (79.45%), Postives = 116/146 (79.45%), Query Frame = 0


Query: 1   MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI 60
           MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI
Sbjct: 47  MPQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCI 106

Query: 61  VTHLRNKSDCPCCAHFLRSTSIFPNILLD------------------------------K 117
           VTHLRNKSDCPCCAHFLRSTSIFPNILLD                              K
Sbjct: 107 VTHLRNKSDCPCCAHFLRSTSIFPNILLDKITNRMQCSFKAQGAIKRNCLLGLKRKMQKK 166

[Close]

BLAST of Pay0009071 vs. NCBI nr
Match: XP_004145465.3 (E3 ubiquitin-protein ligase COP1 isoform X1 [Cucumis sativus] >KAE8653640.1 hypothetical protein Csa_007625 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 2.5e-52
Identity = 106/117 (90.60%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 2   PQFLPEDANAAA--ATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMC 61
           PQF P+ ANAAA   TPTPT A SHS+TDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMC
Sbjct: 3   PQFQPDAANAAAPTPTPTPTTAPSHSNTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMC 62

Query: 62  IVTHLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 117
           IVTHLRNKSDCPCCAHFLRS SIFPNILLDKLLKKTSARQIKKT SPFGYLQQALQK
Sbjct: 63  IVTHLRNKSDCPCCAHFLRSNSIFPNILLDKLLKKTSARQIKKTASPFGYLQQALQK 119

[Close]

BLAST of Pay0009071 vs. NCBI nr
Match: XP_038894733.1 (E3 ubiquitin-protein ligase COP1-like [Benincasa hispida])

HSP 1 Score: 197.6 bits (501), Expect = 7.0e-47
Identity = 99/115 (86.09%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 2   PQFLPEDANAAAATPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIV 61
           PQF P DANAA       A AS S+TDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIV
Sbjct: 50  PQFEPGDANAA-------APASQSNTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIV 109

Query: 62  THLRNKSDCPCCAHFLRSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 117
           THLRNKSDCPCCAHFLRS SIFPNILLDKLLKKTSARQIKK+TS FGYL QALQK
Sbjct: 110 THLRNKSDCPCCAHFLRSNSIFPNILLDKLLKKTSARQIKKSTSQFGYLHQALQK 157

[Close]

BLAST of Pay0009071 vs. NCBI nr
Match: XP_031735991.1 (E3 ubiquitin-protein ligase COP1 isoform X2 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 5.5e-44
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 18  PTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFL 77
           P+   S   TDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFL
Sbjct: 17  PSTLDSTPYTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFL 76

Query: 78  RSTSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 117
           RS SIFPNILLDKLLKKTSARQIKKT SPFGYLQQALQK
Sbjct: 77  RSNSIFPNILLDKLLKKTSARQIKKTASPFGYLQQALQK 115

[Close]

BLAST of Pay0009071 vs. TAIR 10
Match: AT2G32950.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-35
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 20  AAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRS 79
           +  S     DLDKD+LCPICMQIIKDAFLT CGHSFCYMCI+THLRNKSDCPCC+  L +
Sbjct: 36  SGGSEIGAPDLDKDLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTN 95

Query: 80  TSIFPNILLDKLLKKTSARQIKKTTSPFGYLQQALQK 117
             ++PN LLDKLLKKTSAR + KT SP    ++ALQ+
Sbjct: 96  NQLYPNFLLDKLLKKTSARHVSKTASPLDQFREALQR 132

[Close]

BLAST of Pay0009071 vs. TAIR 10
Match: AT5G47430.1 (DWNN domain, a CCHC-type zinc finger )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 29  DLDKDMLCPICMQIIKDAFLTT--CGHSFCYMCIVTHLRNKSDCPCCAHFLRSTSIFPNI 88
           +L  ++ CP+C +++KDA LT+  C  SFC  CI  H+ +KS C C     RS  +  ++
Sbjct: 288 ELPPELKCPLCKEVMKDAALTSKCCYKSFCDKCIRDHIISKSMCVCG----RSDVLADDL 347

Query: 89  LLDKLLKKTSAR 99
           L +K L+ T  R
Sbjct: 348 LPNKTLRDTINR 355

[Close]

BLAST of Pay0009071 vs. TAIR 10
Match: AT5G47430.2 (DWNN domain, a CCHC-type zinc finger )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 29  DLDKDMLCPICMQIIKDAFLTT--CGHSFCYMCIVTHLRNKSDCPCCAHFLRSTSIFPNI 88
           +L  ++ CP+C +++KDA LT+  C  SFC  CI  H+ +KS C C     RS  +  ++
Sbjct: 227 ELPPELKCPLCKEVMKDAALTSKCCYKSFCDKCIRDHIISKSMCVCG----RSDVLADDL 286

Query: 89  LLDKLLKKTSAR 99
           L +K L+ T  R
Sbjct: 287 LPNKTLRDTINR 294

[Close]

BLAST of Pay0009071 vs. TAIR 10
Match: AT5G47430.3 (DWNN domain, a CCHC-type zinc finger )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 29  DLDKDMLCPICMQIIKDAFLTT--CGHSFCYMCIVTHLRNKSDCPCCAHFLRSTSIFPNI 88
           +L  ++ CP+C +++KDA LT+  C  SFC  CI  H+ +KS C C     RS  +  ++
Sbjct: 285 ELPPELKCPLCKEVMKDAALTSKCCYKSFCDKCIRDHIISKSMCVCG----RSDVLADDL 344

Query: 89  LLDKLLKKTSAR 99
           L +K L+ T  R
Sbjct: 345 LPNKTLRDTINR 352

[Close]

BLAST of Pay0009071 vs. TAIR 10
Match: AT1G74990.1 (RING/U-box superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05
Identity = 19/63 (30.16%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 25 SDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIV--THLRNKSD-CPCCAHFLRSTS 84
          ++ DD   +  C IC+++ ++  +T CGH FC+ C+    H  +KS+ CP C   ++  +
Sbjct: 8  NEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVKEDT 67

The following BLAST results are available for this feature:

BLAST of Pay0009071 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93471	1.2e-36	77.27	E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1	[more]
P43254	1.9e-34	67.01	E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV...	[more]
Q8NHY2	8.4e-11	38.89	E3 ubiquitin-protein ligase COP1 OS=Homo sapiens OX=9606 GN=COP1 PE=1 SV=1	[more]
Q9R1A8	8.4e-11	38.89	E3 ubiquitin-protein ligase COP1 OS=Mus musculus OX=10090 GN=Cop1 PE=1 SV=2	[more]
O70263	2.5e-07	31.43	E3 ubiquitin-protein ligase LNX OS=Mus musculus OX=10090 GN=Lnx1 PE=1 SV=1	[more]

BLAST of Pay0009071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIH5	4.5e-60	100.00	E3 ubiquitin-protein ligase COP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C954	4.5e-60	100.00	E3 ubiquitin-protein ligase COP1-like OS=Cucumis melo OX=3656 GN=LOC103498239 PE...	[more]
A0A5D3CLL8	2.6e-55	79.45	E3 ubiquitin-protein ligase COP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LYH0	1.2e-52	90.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699620 PE=4 SV=1	[more]
A0A6J1CL47	1.0e-43	81.98	E3 ubiquitin-protein ligase COP1-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]

BLAST of Pay0009071 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458987.1	9.4e-60	100.00	PREDICTED: E3 ubiquitin-protein ligase COP1-like [Cucumis melo] >KAA0043144.1 E3...	[more]
TYK12320.1	5.3e-55	79.45	E3 ubiquitin-protein ligase COP1-like [Cucumis melo var. makuwa]	[more]
XP_004145465.3	2.5e-52	90.60	E3 ubiquitin-protein ligase COP1 isoform X1 [Cucumis sativus] >KAE8653640.1 hypo...	[more]
XP_038894733.1	7.0e-47	86.09	E3 ubiquitin-protein ligase COP1-like [Benincasa hispida]	[more]
XP_031735991.1	5.5e-44	90.91	E3 ubiquitin-protein ligase COP1 isoform X2 [Cucumis sativus]	[more]

BLAST of Pay0009071 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32950.1	1.3e-35	67.01	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G47430.1	1.1e-05	37.50	DWNN domain, a CCHC-type zinc finger	[more]
AT5G47430.2	1.1e-05	37.50	DWNN domain, a CCHC-type zinc finger	[more]
AT5G47430.3	1.1e-05	37.50	DWNN domain, a CCHC-type zinc finger	[more]
AT1G74990.1	1.9e-05	30.16	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 36..73 e-value: 6.9E-7 score: 38.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 36..73 score: 11.987676
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 10..127 e-value: 2.7E-21 score: 77.6
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 36..73 e-value: 3.6E-11 score: 42.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR44080:SF2	E3 UBIQUITIN-PROTEIN LIGASE COP1	coord: 11..119
None	No IPR available	CDD	cd16504	RING-HC_COP1	coord: 32..77 e-value: 7.13157E-19 score: 72.291
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 28..94
IPR042755	E3 ubiquitin-protein ligase COP1	PANTHER	PTHR44080	E3 UBIQUITIN-PROTEIN LIGASE COP1	coord: 11..119
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 51..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0009071.1	Pay0009071.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046283	anthocyanin-containing compound metabolic process
biological_process	GO:0006281	DNA repair
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0010119	regulation of stomatal movement
biological_process	GO:0009641	shade avoidance
cellular_component	GO:0016604	nuclear body
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity