Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTTATAATCTTTTTAAATGGACTTTTACCTGAATTTGGAATGGCAAAGGCACAGATTCTCTCTGACTCTAAGATTCCATCATTAGACGATGCTTTCACTCGTGTCCTTCACATTGAAAGCTCTCCGAATGGTGTATTTATTCCTCAATCTAGTAGTGCTCTCATTAGCAAGAACAACAACCCTCGAGCACCTCGAGCAATGGATGGCAATGTTTAGAGGAAGAGTTATGATCATCGAAAACCAGATTCTACAGAGATTGTTTGTAACTATTGTCGTAAGCCAGGCCATATGAAACGTGATTGTCGAAAATTGTTATATAAGAATAGTCAACAATCTCAACATGCTCAGATAGCTTCCACATGTGCTATACCAGAGGCATCAGTTACAATTTCTGCAGATGAGTACGCTAAGTTTCAGAACTACCAAGATTCATTACAAGCGTCATCTTCCTCTACTTTTGTTGCACCCACTGTTGCCTCAAGTAATACCATGTGTCTTCTTATATCATCTACAAAATGGGTCATACACTATGGTGCCACAGCCCATATGATAGGTAATTCTTGCCTATTTTCTAGATCGTTGTCCCTTGCTCCGTTTCCATCTGTCACATTGGCAGATGGCTCCACATCTTCTATTCTTGGATCTGGCACTATTCATCTTACCCTATCATTTTCTCTATCTTCTTTGTTACATTTGCCTAACTTATCCTTTAATTTAATTTCTATTAGTTAACTTACTCATGACCTTAATTGTGTTGTCTTGTTCTTTCCTGGTTATTGCTTATTTCAGGATCGTGTGACGAAGAAGATTATTGGTAA
mRNA sequence
ATGGTTGTTATAATCTTTTTAAATGGACTTTTACCTGAATTTGGAATGGCAAAGGCACAGATTCTCTCTGACTCTAAGATTCCATCATTAGACGATGCTTTCACTCGTGTCCTTCACATTGAAAGCTCTCCGAATGGTGTATTTATTCCTCAATCTAGTAGTGCTCTCATTAGCAAGAACAACAACCCTCGAGCACCTCGAGCAATGGATGGCAATATTGTTTGTAACTATTGTCGTAAGCCAGGCCATATGAAACGTGATTGTCGAAAATTGTTATATAAGAATAGTCAACAATCTCAACATGCTCAGATAGCTTCCACATGTGCTATACCAGAGGCATCAGTTACAATTTCTGCAGATGAGTACGCTAAGTTTCAGAACTACCAAGATTCATTACAAGCGTCATCTTCCTCTACTTTTGTTGCACCCACTGTTGCCTCAAGTAATACCATGTGTCTTCTTATATCATCTACAAAATGGGTCATACACTATGGTGCCACAGCCCATATGATAGGATCGTGTGACGAAGAAGATTATTGGTAA
Coding sequence (CDS)
ATGGTTGTTATAATCTTTTTAAATGGACTTTTACCTGAATTTGGAATGGCAAAGGCACAGATTCTCTCTGACTCTAAGATTCCATCATTAGACGATGCTTTCACTCGTGTCCTTCACATTGAAAGCTCTCCGAATGGTGTATTTATTCCTCAATCTAGTAGTGCTCTCATTAGCAAGAACAACAACCCTCGAGCACCTCGAGCAATGGATGGCAATATTGTTTGTAACTATTGTCGTAAGCCAGGCCATATGAAACGTGATTGTCGAAAATTGTTATATAAGAATAGTCAACAATCTCAACATGCTCAGATAGCTTCCACATGTGCTATACCAGAGGCATCAGTTACAATTTCTGCAGATGAGTACGCTAAGTTTCAGAACTACCAAGATTCATTACAAGCGTCATCTTCCTCTACTTTTGTTGCACCCACTGTTGCCTCAAGTAATACCATGTGTCTTCTTATATCATCTACAAAATGGGTCATACACTATGGTGCCACAGCCCATATGATAGGATCGTGTGACGAAGAAGATTATTGGTAA
Protein sequence
MVVIIFLNGLLPEFGMAKAQILSDSKIPSLDDAFTRVLHIESSPNGVFIPQSSSALISKNNNPRAPRAMDGNIVCNYCRKPGHMKRDCRKLLYKNSQQSQHAQIASTCAIPEASVTISADEYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKWVIHYGATAHMIGSCDEEDYW
Homology
BLAST of Pay0008770 vs. ExPASy TrEMBL
Match:
A0A5A7SR90 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00970 PE=4 SV=1)
HSP 1 Score: 280.8 bits (717), Expect = 4.0e-72
Identity = 151/188 (80.32%), Postives = 154/188 (81.91%), Query Frame = 0
Query: 1 MVVIIFLNGLLPEFGMAKAQILSDSKIPSLDDAFTRVLHIESSPNGVFIPQSSSALISKN 60
MVV IFLNGLLPEFGM KAQILSDSKIPSLDDAFTRVL IESSPNGV IPQSSSALISKN
Sbjct: 96 MVVTIFLNGLLPEFGMTKAQILSDSKIPSLDDAFTRVLRIESSPNGVSIPQSSSALISKN 155
Query: 61 NNPRAPRAMDGN---------------IVCNYCRKPGHMKRDCRKLLYKNSQQSQHAQIA 120
NNPRAPRAMDGN IVCNYC KPGH+KRDCRKLLYKNSQQSQHAQIA
Sbjct: 156 NNPRAPRAMDGNVQRKSYDHRKPYSTKIVCNYCHKPGHIKRDCRKLLYKNSQQSQHAQIA 215
Query: 121 STCAIPEASVTISADEYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKWVIHYG 174
STC IPEASVTISADEY KFQNYQD LQASSSST +A TVA NT CLL SSTKWVI
Sbjct: 216 STCDIPEASVTISADEYTKFQNYQDPLQASSSSTPIASTVAPGNTKCLLTSSTKWVIDSS 275
BLAST of Pay0008770 vs. ExPASy TrEMBL
Match:
A0A5D3E4V8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001910 PE=4 SV=1)
HSP 1 Score: 255.8 bits (652), Expect = 1.4e-64
Identity = 143/186 (76.88%), Postives = 145/186 (77.96%), Query Frame = 0
Query: 1 MVVIIFLNGLLPEFGMAKAQILSDSKIPSLDDAFTRVLHIESSPNGVFIPQSSSALISKN 60
M V+IFLNGLLPEFGMAK QILSDSKIPSLDDAFTRVL IESS NGV IPQSSSA ISKN
Sbjct: 1 MTVMIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKN 60
Query: 61 NNPRAPRAMDGN---------------IVCNYCRKPGHMKRDCRKLLYKNSQQSQHAQIA 120
NNPRAPRAMDGN IVCN K GH+KRDCRKLLYKNSQQSQHAQIA
Sbjct: 61 NNPRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCRKLLYKNSQQSQHAQIA 120
Query: 121 STCAIPEASVTISADEYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKWVIHYG 172
STC IPE VTIS DEYAKFQNYQDSLQA SSST VA TVA T CLL SSTKWVI G
Sbjct: 121 STCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSG 180
BLAST of Pay0008770 vs. ExPASy TrEMBL
Match:
A0A5D3E5M8 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00270 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.4e-56
Identity = 125/166 (75.30%), Postives = 131/166 (78.92%), Query Frame = 0
Query: 10 LLPEFGMAKAQILSDSKIPSLDDAFTRVLHIESSPNGVFIPQSSSALISKNNNPRAPRAM 69
LLP KAQILSDSKIPSLD+AFTRVL ESSPNGV IPQSS++LISKNNNPRAPRAM
Sbjct: 76 LLPFSPDVKAQILSDSKIPSLDNAFTRVLRFESSPNGVSIPQSSTSLISKNNNPRAPRAM 135
Query: 70 DGN---------------IVCNYCRKPGHMKRDCRKLLYKNSQQSQHAQIASTCAIPEAS 129
DGN IVCNYCRKP H KRDCRKLLYKNSQQSQHAQIASTC IPEAS
Sbjct: 136 DGNVHTKSYDHRKPDSTEIVCNYCRKPSHRKRDCRKLLYKNSQQSQHAQIASTCDIPEAS 195
Query: 130 VTISADEYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKW 161
+TISA+E AK QNYQDSLQASSSST +A TV NT CLL SSTKW
Sbjct: 196 ITISANECAKLQNYQDSLQASSSSTPIASTVVPGNTKCLLTSSTKW 241
BLAST of Pay0008770 vs. ExPASy TrEMBL
Match:
A0A5A7T406 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00610 PE=4 SV=1)
HSP 1 Score: 228.0 bits (580), Expect = 3.1e-56
Identity = 125/166 (75.30%), Postives = 131/166 (78.92%), Query Frame = 0
Query: 10 LLPEFGMAKAQILSDSKIPSLDDAFTRVLHIESSPNGVFIPQSSSALISKNNNPRAPRAM 69
LLP KAQILSDSKIPSLD+AFTRVL ESSPNGV IPQSS++LISKNNNPRAPRAM
Sbjct: 76 LLPFSPDVKAQILSDSKIPSLDNAFTRVLCFESSPNGVSIPQSSTSLISKNNNPRAPRAM 135
Query: 70 DGN---------------IVCNYCRKPGHMKRDCRKLLYKNSQQSQHAQIASTCAIPEAS 129
DGN IVCNYCRKP H KRDCRKLLYKNSQQSQHAQIASTC IPEAS
Sbjct: 136 DGNVHTKSYDHRKPDSTEIVCNYCRKPSHRKRDCRKLLYKNSQQSQHAQIASTCDIPEAS 195
Query: 130 VTISADEYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKW 161
+TISA+E AK QNYQDSLQASSSST +A TV NT CLL SSTKW
Sbjct: 196 ITISANECAKLQNYQDSLQASSSSTPIASTVVPGNTKCLLTSSTKW 241
BLAST of Pay0008770 vs. ExPASy TrEMBL
Match:
A0A5A7UHS1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00150 PE=4 SV=1)
HSP 1 Score: 222.2 bits (565), Expect = 1.7e-54
Identity = 126/160 (78.75%), Postives = 127/160 (79.38%), Query Frame = 0
Query: 1 MVVIIFLNGLLPEFGMAKAQILSDSKIPSLDDAFTRVLHIESSPNGVFIPQSSSALISKN 60
MVVIIFLNGLLPEFGMAKAQILSDSKIPSLDDAFTRVL IESSPNGVFIPQSSSALI+KN
Sbjct: 52 MVVIIFLNGLLPEFGMAKAQILSDSKIPSLDDAFTRVLRIESSPNGVFIPQSSSALINKN 111
Query: 61 NNPRAPRAMDGNIVCNYCRKPGHMKRDCRKLLYKNSQQSQHAQIASTCAIPEASVTISAD 120
NNPRAPRAMDGN IASTCAIPEASVTISAD
Sbjct: 112 NNPRAPRAMDGN-------------------------------IASTCAIPEASVTISAD 171
Query: 121 EYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKW 161
YAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKW
Sbjct: 172 GYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKW 180
BLAST of Pay0008770 vs. NCBI nr
Match:
XP_031738594.1 (uncharacterized protein LOC116402733 isoform X1 [Cucumis sativus])
HSP 1 Score: 286.6 bits (732), Expect = 1.5e-73
Identity = 151/188 (80.32%), Postives = 158/188 (84.04%), Query Frame = 0
Query: 1 MVVIIFLNGLLPEFGMAKAQILSDSKIPSLDDAFTRVLHIESSPNGVFIPQSSSALISKN 60
MVV+IFLNGLLPEFGMAK QILSDSKIPSLDDAFTRVL IESSP V IPQ SSAL SKN
Sbjct: 1 MVVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN 60
Query: 61 NNPRAPRAMDGN--------IVCNYCRKPGHMKRDCRKLLYKNSQQSQHAQIASTCAIPE 120
NNPRAP+ + IVCNYCRKPGHMKRDCRKLLYKNSQ+SQHAQIASTC IPE
Sbjct: 61 NNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPE 120
Query: 121 ASVTISADEYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKWVIHYGATAHMIG 180
ASVTISADE+AKFQNYQ+SLQASSSST +A TVA N CLL SSTKWVI GATAHM G
Sbjct: 121 ASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTG 180
BLAST of Pay0008770 vs. NCBI nr
Match:
KAA0033068.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK03482.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 280.8 bits (717), Expect = 8.3e-72
Identity = 151/188 (80.32%), Postives = 154/188 (81.91%), Query Frame = 0
Query: 1 MVVIIFLNGLLPEFGMAKAQILSDSKIPSLDDAFTRVLHIESSPNGVFIPQSSSALISKN 60
MVV IFLNGLLPEFGM KAQILSDSKIPSLDDAFTRVL IESSPNGV IPQSSSALISKN
Sbjct: 96 MVVTIFLNGLLPEFGMTKAQILSDSKIPSLDDAFTRVLRIESSPNGVSIPQSSSALISKN 155
Query: 61 NNPRAPRAMDGN---------------IVCNYCRKPGHMKRDCRKLLYKNSQQSQHAQIA 120
NNPRAPRAMDGN IVCNYC KPGH+KRDCRKLLYKNSQQSQHAQIA
Sbjct: 156 NNPRAPRAMDGNVQRKSYDHRKPYSTKIVCNYCHKPGHIKRDCRKLLYKNSQQSQHAQIA 215
Query: 121 STCAIPEASVTISADEYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKWVIHYG 174
STC IPEASVTISADEY KFQNYQD LQASSSST +A TVA NT CLL SSTKWVI
Sbjct: 216 STCDIPEASVTISADEYTKFQNYQDPLQASSSSTPIASTVAPGNTKCLLTSSTKWVIDSS 275
BLAST of Pay0008770 vs. NCBI nr
Match:
XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])
HSP 1 Score: 265.0 bits (676), Expect = 4.7e-67
Identity = 142/181 (78.45%), Postives = 150/181 (82.87%), Query Frame = 0
Query: 1 MVVIIFLNGLLPEFGMAKAQILSDSKIPSLDDAFTRVLHIESSPNGVFIPQSSSALISKN 60
M V+IFLNGLLPEFGMAK QILSDSKIPSLDDAFTRVL IESSP V IPQ SSAL SKN
Sbjct: 163 MAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN 222
Query: 61 NNPRAPRAMDGN--------IVCNYCRKPGHMKRDCRKLLYKNSQQSQHAQIASTCAIPE 120
NNPRAP+ + IVCNYCRKPGHMKRDCRKLLYKNSQ+SQHAQIASTC IPE
Sbjct: 223 NNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPE 282
Query: 121 ASVTISADEYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKWVIHYGATAHMIG 174
ASVTISADE+AKFQNYQ+SLQASSSST +A TVA N CLL SSTKWVI GATAHM G
Sbjct: 283 ASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTG 342
BLAST of Pay0008770 vs. NCBI nr
Match:
KAA0035572.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK30964.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 255.8 bits (652), Expect = 2.9e-64
Identity = 143/186 (76.88%), Postives = 145/186 (77.96%), Query Frame = 0
Query: 1 MVVIIFLNGLLPEFGMAKAQILSDSKIPSLDDAFTRVLHIESSPNGVFIPQSSSALISKN 60
M V+IFLNGLLPEFGMAK QILSDSKIPSLDDAFTRVL IESS NGV IPQSSSA ISKN
Sbjct: 1 MTVMIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKN 60
Query: 61 NNPRAPRAMDGN---------------IVCNYCRKPGHMKRDCRKLLYKNSQQSQHAQIA 120
NNPRAPRAMDGN IVCN K GH+KRDCRKLLYKNSQQSQHAQIA
Sbjct: 61 NNPRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCRKLLYKNSQQSQHAQIA 120
Query: 121 STCAIPEASVTISADEYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKWVIHYG 172
STC IPE VTIS DEYAKFQNYQDSLQA SSST VA TVA T CLL SSTKWVI G
Sbjct: 121 STCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSG 180
BLAST of Pay0008770 vs. NCBI nr
Match:
XP_031738595.1 (uncharacterized protein LOC116402733 isoform X2 [Cucumis sativus])
HSP 1 Score: 241.5 bits (615), Expect = 5.6e-60
Identity = 134/188 (71.28%), Postives = 141/188 (75.00%), Query Frame = 0
Query: 1 MVVIIFLNGLLPEFGMAKAQILSDSKIPSLDDAFTRVLHIESSPNGVFIPQSSSALISKN 60
MVV+IFLNGLLPEFGMAK QILSDSKIPSLDDAFTRVL IESSP V IPQ SSAL SKN
Sbjct: 1 MVVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN 60
Query: 61 NNPRAPRAMDGN--------IVCNYCRKPGHMKRDCRKLLYKNSQQSQHAQIASTCAIPE 120
NNPRAP+ + IVCNYCRKPGHMKRDCRKLLYKNSQ+SQHAQIASTC IPE
Sbjct: 61 NNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPE 120
Query: 121 ASVTISADEYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLLISSTKWVIHYGATAHMIG 180
ASVTISADE+AKFQNYQ+SLQASSSST +A TVA G
Sbjct: 121 ASVTISADEFAKFQNYQESLQASSSSTPIASTVAP------------------------G 164
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SR90 | 4.0e-72 | 80.32 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G... | [more] |
A0A5D3E4V8 | 1.4e-64 | 76.88 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
A0A5D3E5M8 | 1.4e-56 | 75.30 | Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G0027... | [more] |
A0A5A7T406 | 3.1e-56 | 75.30 | Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00610 ... | [more] |
A0A5A7UHS1 | 1.7e-54 | 78.75 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
Match Name | E-value | Identity | Description | |
XP_031738594.1 | 1.5e-73 | 80.32 | uncharacterized protein LOC116402733 isoform X1 [Cucumis sativus] | [more] |
KAA0033068.1 | 8.3e-72 | 80.32 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK03482.1 gag-pol polyprotein [... | [more] |
XP_031744753.1 | 4.7e-67 | 78.45 | uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus] | [more] |
KAA0035572.1 | 2.9e-64 | 76.88 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK30964.1 putative m... | [more] |
XP_031738595.1 | 5.6e-60 | 71.28 | uncharacterized protein LOC116402733 isoform X2 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |