Pay0008695 (gene) Melon (Payzawat) v1

Overview


Name	Pay0008695
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Mic1 domain-containing protein
Location	chr04: 29918995 .. 29921322 (+)
RNA-Seq Expression	Pay0008695
Synteny	Pay0008695

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAGAAGGATAGAGCAACAGCTTCCTTGCTCAAGCGTGTTTTAGTTTCTTGTGCGTCTCAGGTATGTGAAGGGATTGAAAGTGAAACATGGATACCGGAAGACTGGAATGTATTATTCAAGTGCAATTCTATAAATTCAGTGAGATATGGTCATTGGATTGTCTTTCTTTTTTCTTTTTGTTAGAATCATAACCTTGGTTGAGGATCGGGTTCTTGTTCCTTAGCCTATGCTTACCTAATTATGTTGATGAATTCGATTCCTACAAATAGAAGAGTAAAGCTAATTTTTACTGCAAAGAAATCAACAATGACACCCTCTCTTTGAAATTTCCGTTCATATTCCCAAAATTATATGCATTTCCTAAAATTTCCGTTTATTAGTTTGGTCTCTTTTGGATTGGAGTCTTTTCTTGAAGTTGAGGACTTCTTTTATGGTCGTGTTTTTTGTTTGCATTTGTTTCTCTCTTTTTTTCTCAATGAAAACTCTGGTTCTTGTAAAAGGGATTAGAAAAAAAAAAAAAAAGAGTTGAAGAGTTTCATTGTGGAATTTTTTTTCAAAATAGCATCAACACTTGTGAGTCTATGACTGGGTTCCGAGACAGAGTTCCAGCTAAAGCCCTTTCCCTAGTTGATATACCTTGTAAAAGCCATTAGTTGAAGTTCTTTAGGCACATTATTTTGTAGTTGCATGAATTTTTTATCAATAAGAAACTACACGTTCATTGAGAAACATGAAATAAATGAGAGAAAGAAGGCCATACTTAAAATAAAATAAATTAAACAGCTTGAGAAAGGGTGCTTCAATGACCAGCTATACTGAAAAAAATAGTTACAAATCTCTTTTACAGCTGAAGTTCAAAGAGACACTTCAAACCTCACTAGGATTGGGGATCAAAGCTCCTCACTAGATTTCTGTATCTCCTAAAGAGAACCTATTATTTAGCTCAATCCGAATGCATTTAAAGGATTTGTAAAGCAAGTAGCTCTACACAAGAACTGCACTTTATCTCTAAGGAACTTCATAAATGAAGGACGCAGAATTCCCTTGTTAGGGGCACTTTGTTTGGTTCCCTTGTTACAAGAGGACTTGTATTCTTGGCTCTTAAGTTGGTTTTATCAAAAAAGGAAAAAAAAAAAGGGAAGTTGGTTTTAGTTTCCCCTCCTAAATATATCTGTTTCTTATATCAAAAAGTTACATTTCATGAACTTCACGTGTTGCTTAGTAGCTAACATACTGTATTGCAATCTGATGGTTCTCAACCAGTCAACCTTCATGCTTGCTGCTTCTATAAAGTCTTGTATTGTTTTGTTTGTTTTTTAACCCTCCATGTTCAGGGTAGCTTAAGGATAGCTTCACTGTCTCACCGATTTGTGAGACAATCTCTTAAATAGGTGGCTATCATTGTTCGAACCCACAACCTCTAAAGTACTTGGGTTTATAGTTTTGACTCTTTTGATTGCTTTGGCCAACCATTGTAGTTTGCTTCTAGAAAATATCAAGTTCCAATATCTGCAACATATGGTTGATACCATTTCGTGACTTCGTGTTTATGGGACTGTTAAGAACTTTGAAAAAAATAATTTTTTATTGTTTGAATTGTGATTCAAATGATTTAGGAAAGTAAGAGAACATGGAACAGGGGCTGATACTTAATTTGTGTTATTTTCATGCATTATATGTACATATATACATCGTGGTTGGTTTTCCACAACCATTTATTATACATATGTGTGTGTATAGAGTAATTTTAAAATCAATCAATCAATTGTTTGTGTAGGCAAAACAATATGGGGGTTGTGTTGCGGCGAAGGTTCCAAAAGTTGAACGTGATATGTGTTTGAAAGAATTTATTGCACTAAAGTCTTGCATGCAAAATACGGTATCTATCAATAATTACAATTTATTTTTTAACTGATTTGAGGAAATGATATTTTTTAAAGGAGAAAAAAGAAACGTATTTGAGGAAACAAATAACTGTAGGGCCCGATTGACTACAATTTTGATTTTGGTTTTCTGTTTTCTAAAAATTGTGCTTATTTATTCATTTTATTTGTTTCCTAATCTACTTTCAAAATTTGTTTTTGAGATCGTGGCCAAATTTAAAACTAGGAAGAATTTGGTCAAATTTGCTAGTGTTTATATACAAGTGAAAAACAAAATTAAAAAAAAAAACACTGTTGTACATAGTTTTTACAAGCTTAGTTTTTAACAACAAAAACCTAAAAAAAAAAAAACTGCTTGAAATTGATACTTGGCTTTATCTCGTTCAAATATTTGCTCTCAACTAATCAAATGGTTGTTGAATAGCTTCGGGGGAAATGA

mRNA sequence

ATGGACCAGAAGGATAGAGCAACAGCTTCCTTGCTCAAGCGTGTTTTAGTTTCTTGTGCGTCTCAGGCAAAACAATATGGGGGTTGTGTTGCGGCGAAGGTTCCAAAAGTTGAACGTGATATGTGTTTGAAAGAATTTATTGCACTAAAGTCTTGCATGCAAAATACGCTTCGGGGGAAATGA

Coding sequence (CDS)

ATGGACCAGAAGGATAGAGCAACAGCTTCCTTGCTCAAGCGTGTTTTAGTTTCTTGTGCGTCTCAGGCAAAACAATATGGGGGTTGTGTTGCGGCGAAGGTTCCAAAAGTTGAACGTGATATGTGTTTGAAAGAATTTATTGCACTAAAGTCTTGCATGCAAAATACGCTTCGGGGGAAATGA

Protein sequence

MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK

Homology

[Close]

BLAST of Pay0008695 vs. ExPASy TrEMBL
Match: A0A1S4DUQ7 (uncharacterized protein LOC107990619 OS=Cucumis melo OX=3656 GN=LOC107990619 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 60
          MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK
Sbjct: 1  MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 60

[Close]

BLAST of Pay0008695 vs. ExPASy TrEMBL
Match: A0A0A0LB85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G799640 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.2e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 60
          MD+KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK
Sbjct: 34 MDRKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 93

[Close]

BLAST of Pay0008695 vs. ExPASy TrEMBL
Match: A0A5E4GFC7 (PREDICTED: unnamed OS=Prunus dulcis OX=3755 GN=ALMOND_2B000978 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.2e-18
Identity = 45/60 (75.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 60
           +D K+R + S LKR+LV+CA+Q K+YGGCVAAKVP+VERDMCLKEF+ALKSCMQN LRGK
Sbjct: 44  VDMKERNSTSTLKRILVTCAAQGKEYGGCVAAKVPQVERDMCLKEFLALKSCMQNVLRGK 103

[Close]

BLAST of Pay0008695 vs. ExPASy TrEMBL
Match: A0A3N7G3J9 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G060550 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 44/57 (77.19%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 4  KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 61
          K+R T S L+RVLV+CA+QAK+YGGCVAAKVP++ERDMCLKEF+ALK+CMQNT+RGK
Sbjct: 2  KERNTTSTLRRVLVNCAAQAKEYGGCVAAKVPEIERDMCLKEFLALKNCMQNTIRGK 58

[Close]

BLAST of Pay0008695 vs. ExPASy TrEMBL
Match: A0A2C9V8Y0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G038400 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 44/57 (77.19%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 4  KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 61
          K+R T S LKR+LV+CA+QAK+YGGCVAAKVP++ERD+CLKEF+ALK+CMQNTLRGK
Sbjct: 2  KERNTTSTLKRILVNCAAQAKEYGGCVAAKVPEIERDICLKEFLALKNCMQNTLRGK 58

[Close]

BLAST of Pay0008695 vs. NCBI nr
Match: XP_016899714.1 (PREDICTED: uncharacterized protein LOC107990619 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 3.7e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 60
          MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK
Sbjct: 1  MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 60

[Close]

BLAST of Pay0008695 vs. NCBI nr
Match: KAG6580793.1 (hypothetical protein SDJN03_20795, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22
Identity = 56/60 (93.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 60
           MD+KD+ATASLLKRVLV+CASQAKQYGGCVA+KVPKVERDMCLKEFIALKSCMQNTLRGK
Sbjct: 98  MDRKDKATASLLKRVLVTCASQAKQYGGCVASKVPKVERDMCLKEFIALKSCMQNTLRGK 157

[Close]

BLAST of Pay0008695 vs. NCBI nr
Match: KAE8651130.1 (hypothetical protein Csa_002376 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 2.2e-21
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNT 57
          MD+KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNT
Sbjct: 7  MDRKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNT 62

[Close]

BLAST of Pay0008695 vs. NCBI nr
Match: VVA38545.1 (PREDICTED: unnamed [Prunus dulcis])

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-17
Identity = 45/60 (75.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 60
           +D K+R + S LKR+LV+CA+Q K+YGGCVAAKVP+VERDMCLKEF+ALKSCMQN LRGK
Sbjct: 44  VDMKERNSTSTLKRILVTCAAQGKEYGGCVAAKVPQVERDMCLKEFLALKSCMQNVLRGK 103

[Close]

BLAST of Pay0008695 vs. NCBI nr
Match: RQP01403.1 (hypothetical protein POPTR_016G060550 [Populus trichocarpa])

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 44/57 (77.19%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 4  KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 61
          K+R T S L+RVLV+CA+QAK+YGGCVAAKVP++ERDMCLKEF+ALK+CMQNT+RGK
Sbjct: 2  KERNTTSTLRRVLVNCAAQAKEYGGCVAAKVPEIERDMCLKEFLALKNCMQNTIRGK 58

[Close]

BLAST of Pay0008695 vs. TAIR 10
Match: AT3G12012.1 (conserved peptide upstream open reading frame 20 )

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-17
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1  MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTLRGK 60
          M +K+  TAS L R+L +C+ QAK YG CVA+KV +VERD+CLKEF+ALKSCMQ+T+RGK
Sbjct: 1  MKEKNSTTASTLGRILATCSKQAKDYGSCVASKVHEVERDICLKEFLALKSCMQHTIRGK 60

The following BLAST results are available for this feature:

BLAST of Pay0008695 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0008695 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DUQ7	1.8e-24	100.00	uncharacterized protein LOC107990619 OS=Cucumis melo OX=3656 GN=LOC107990619 PE=...	[more]
A0A0A0LB85	5.2e-24	98.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G799640 PE=4 SV=1	[more]
A0A5E4GFC7	7.2e-18	75.00	PREDICTED: unnamed OS=Prunus dulcis OX=3755 GN=ALMOND_2B000978 PE=4 SV=1	[more]
A0A3N7G3J9	1.2e-17	77.19	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G060550 PE=4 ...	[more]
A0A2C9V8Y0	1.2e-17	77.19	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G038400 PE=4 SV=...	[more]

BLAST of Pay0008695 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899714.1	3.7e-24	100.00	PREDICTED: uncharacterized protein LOC107990619 [Cucumis melo]	[more]
KAG6580793.1	1.2e-22	93.33	hypothetical protein SDJN03_20795, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8651130.1	2.2e-21	98.21	hypothetical protein Csa_002376 [Cucumis sativus]	[more]
VVA38545.1	1.5e-17	75.00	PREDICTED: unnamed [Prunus dulcis]	[more]
RQP01403.1	2.5e-17	77.19	hypothetical protein POPTR_016G060550 [Populus trichocarpa]	[more]

BLAST of Pay0008695 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12012.1	1.6e-17	65.00	conserved peptide upstream open reading frame 20	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034595	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 8	PANTHER	PTHR34561	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 8	coord: 3..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0008695.1	Pay0008695.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
biological_process	GO:0010506	regulation of autophagy
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0035658	Mon1-Ccz1 complex