Pay0008180 (gene) Melon (Payzawat) v1

Overview


Name	Pay0008180
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol polyprotein
Location	chr04: 20500765 .. 20501172 (+)
RNA-Seq Expression	Pay0008180
Synteny	Pay0008180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTGAAGCAGTTTTACCTGTTGAAGTTGAGGTGCCATCCCTTAGGGGTAATCCAAGAGGTAGAACTAGATGAAGGAAAGTGGGCTAAAGTAAGGTACGAGCAATTGAATTTCATAGAAGAAAGGAGACTGACTGCATTATGTAGAGGACACTTATACCAAAAGAAAATAGCACGAGGGTATAACAAAAAAGTTCGACATCACCATTTCCAAGAAGGAAATCTAGTGTTAAAAAGGATCCTACCTTTTCAAAAGGATCACAGAGGAAAATGGACTCCTAATTACGAGGGACCATATATAGTAAAAAGGGCTTTCTCGGGAGGAGCTTTAATTTTGACAAATATGGACGGGGATGACTTGCCTAACGCGATAAGTACAAACTATGTGAAGAAGTACTATGCATAG

mRNA sequence

ATGGTTTTGAAGCAGTTTTACCTGTTGAAGTTGAGGTGCCATCCCTTAGGGGTAATCCAAGAGGTAGAACTAGATGAAGGAAAGTGGGCTAAAGTAAGGTACGAGCAATTGAATTTCATAGAAGAAAGGAGACTGACTGCATTATGTAGAGGACACTTATACCAAAAGAAAATAGCACGAGGGTATAACAAAAAAGTTCGACATCACCATTTCCAAGAAGGAAATCTAGTGTTAAAAAGGATCCTACCTTTTCAAAAGGATCACAGAGGAAAATGGACTCCTAATTACGAGGGACCATATATAGTAAAAAGGGCTTTCTCGGGAGGAGCTTTAATTTTGACAAATATGGACGGGGATGACTTGCCTAACGCGATAAGTACAAACTATGTGAAGAAGTACTATGCATAG

Coding sequence (CDS)

ATGGTTTTGAAGCAGTTTTACCTGTTGAAGTTGAGGTGCCATCCCTTAGGGGTAATCCAAGAGGTAGAACTAGATGAAGGAAAGTGGGCTAAAGTAAGGTACGAGCAATTGAATTTCATAGAAGAAAGGAGACTGACTGCATTATGTAGAGGACACTTATACCAAAAGAAAATAGCACGAGGGTATAACAAAAAAGTTCGACATCACCATTTCCAAGAAGGAAATCTAGTGTTAAAAAGGATCCTACCTTTTCAAAAGGATCACAGAGGAAAATGGACTCCTAATTACGAGGGACCATATATAGTAAAAAGGGCTTTCTCGGGAGGAGCTTTAATTTTGACAAATATGGACGGGGATGACTTGCCTAACGCGATAAGTACAAACTATGTGAAGAAGTACTATGCATAG

Protein sequence

MVLKQFYLLKLRCHPLGVIQEVELDEGKWAKVRYEQLNFIEERRLTALCRGHLYQKKIARGYNKKVRHHHFQEGNLVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNAISTNYVKKYYA

Homology

[Close]

BLAST of Pay0008180 vs. ExPASy TrEMBL
Match: A0A5A7UM09 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003650 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 7.2e-58
Identity = 109/120 (90.83%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 16  LGVIQEVELDEGKWAKVRYEQLNFIEERRLTALCRGHLYQKKIARGYNKKVRHHHFQEGN 75
           L VIQEVELDE KWA+VRYEQLNFIEERRLTALC+G LYQKKIAR YNKKVRHHHFQEG+
Sbjct: 181 LRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQLYQKKIARAYNKKVRHHHFQEGD 240

Query: 76  LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNAISTNYVKKYYA 135
           LVLKRILPFQKDH+GKWTPNYEGPYIVK AFSGGALILTNMDGDDLPN IS NYVKKYYA
Sbjct: 241 LVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALILTNMDGDDLPNPISANYVKKYYA 300

[Close]

BLAST of Pay0008180 vs. ExPASy TrEMBL
Match: A0A5D3D9Y9 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00020 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.1e-57
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 16  LGVIQEVELDEGKWAKVRYEQLNFIEERRLTALCRGHLYQKKIARGYNKKVRHHHFQEGN 75
           L VIQEVELDE KWA+VRY+QLNFIEERRLTALC+G LYQKKIAR YNKKVRHHHFQEG+
Sbjct: 269 LRVIQEVELDEAKWAQVRYKQLNFIEERRLTALCKGQLYQKKIARAYNKKVRHHHFQEGD 328

Query: 76  LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNAISTNYVKKYYA 135
           LVLKRILPFQKDH+GKWTPNYEGPYIVK AFSGGALILTNMDGDDLPN IS NYVKKYYA
Sbjct: 329 LVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALILTNMDGDDLPNPISANYVKKYYA 388

[Close]

BLAST of Pay0008180 vs. ExPASy TrEMBL
Match: A0A5A7VAF2 (RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00050 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.7e-57
Identity = 109/119 (91.60%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 16  LGVIQEVELDEGKWAKVRYEQLNFIEERRLTALCRGHLYQKKIARGYNKKVRHHHFQEGN 75
           L VIQE+ELDE KWA+VRYEQLNFIEERRLTALCRG LYQKKIAR YNKKVRH HFQEGN
Sbjct: 284 LRVIQELELDEAKWAQVRYEQLNFIEERRLTALCRGQLYQKKIARAYNKKVRHRHFQEGN 343

Query: 76  LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNAISTNYVKKYY 135
           LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPN IS +YVKKYY
Sbjct: 344 LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNPISADYVKKYY 402

[Close]

BLAST of Pay0008180 vs. ExPASy TrEMBL
Match: A0A5A7SVL0 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00080 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 6.1e-57
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 16  LGVIQEVELDEGKWAKVRYEQLNFIEERRLTALCRGHLYQKKIARGYNKKVRHHHFQEGN 75
           L VIQE+ELDE KWA+VRYEQLNFIEERRLTALCRG LYQKKIAR YNKKVRH  FQEGN
Sbjct: 90  LRVIQELELDEAKWAQVRYEQLNFIEERRLTALCRGQLYQKKIARAYNKKVRHRQFQEGN 149

Query: 76  LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNAISTNYVKKYYA 135
           LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPN IS +YVKKYYA
Sbjct: 150 LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNPISADYVKKYYA 209

[Close]

BLAST of Pay0008180 vs. ExPASy TrEMBL
Match: A0A6P6BJJ8 (Ribonuclease H OS=Durio zibethinus OX=66656 GN=LOC111318622 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.7e-41
Identity = 81/120 (67.50%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 16   LGVIQEVELDEGKWAKVRYEQLNFIEERRLTALCRGHLYQKKIARGYNKKVRHHHFQEGN 75
            L V++EVEL+E +W + RYEQLNFIEE+RLTALC G LYQ+++ R ++KK R   F+EG 
Sbjct: 1908 LRVLKEVELEEAEWIRERYEQLNFIEEKRLTALCHGQLYQRRMMRAHDKKTRPRCFREGE 1967

Query: 76   LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNAISTNYVKKYYA 135
            LVLKRILP Q D RGKWTPN+EGPY+VKRAFSGGALILT MDG+DLP+ ++++ VKKYYA
Sbjct: 1968 LVLKRILPIQHDSRGKWTPNWEGPYVVKRAFSGGALILTEMDGNDLPHPVNSDAVKKYYA 2027

[Close]

BLAST of Pay0008180 vs. NCBI nr
Match: KAA0054571.1 (Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.5e-57
Identity = 109/120 (90.83%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 16  LGVIQEVELDEGKWAKVRYEQLNFIEERRLTALCRGHLYQKKIARGYNKKVRHHHFQEGN 75
           L VIQEVELDE KWA+VRYEQLNFIEERRLTALC+G LYQKKIAR YNKKVRHHHFQEG+
Sbjct: 181 LRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQLYQKKIARAYNKKVRHHHFQEGD 240

Query: 76  LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNAISTNYVKKYYA 135
           LVLKRILPFQKDH+GKWTPNYEGPYIVK AFSGGALILTNMDGDDLPN IS NYVKKYYA
Sbjct: 241 LVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALILTNMDGDDLPNPISANYVKKYYA 300

[Close]

BLAST of Pay0008180 vs. NCBI nr
Match: TYK20386.1 (Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 231.5 bits (589), Expect = 4.3e-57
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 16  LGVIQEVELDEGKWAKVRYEQLNFIEERRLTALCRGHLYQKKIARGYNKKVRHHHFQEGN 75
           L VIQEVELDE KWA+VRY+QLNFIEERRLTALC+G LYQKKIAR YNKKVRHHHFQEG+
Sbjct: 269 LRVIQEVELDEAKWAQVRYKQLNFIEERRLTALCKGQLYQKKIARAYNKKVRHHHFQEGD 328

Query: 76  LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNAISTNYVKKYYA 135
           LVLKRILPFQKDH+GKWTPNYEGPYIVK AFSGGALILTNMDGDDLPN IS NYVKKYYA
Sbjct: 329 LVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALILTNMDGDDLPNPISANYVKKYYA 388

[Close]

BLAST of Pay0008180 vs. NCBI nr
Match: KAA0065292.1 (RNA-directed DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 5.7e-57
Identity = 109/119 (91.60%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 16  LGVIQEVELDEGKWAKVRYEQLNFIEERRLTALCRGHLYQKKIARGYNKKVRHHHFQEGN 75
           L VIQE+ELDE KWA+VRYEQLNFIEERRLTALCRG LYQKKIAR YNKKVRH HFQEGN
Sbjct: 284 LRVIQELELDEAKWAQVRYEQLNFIEERRLTALCRGQLYQKKIARAYNKKVRHRHFQEGN 343

Query: 76  LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNAISTNYVKKYY 135
           LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPN IS +YVKKYY
Sbjct: 344 LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNPISADYVKKYY 402

[Close]

BLAST of Pay0008180 vs. NCBI nr
Match: KAA0033219.1 (Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 1.3e-56
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 16  LGVIQEVELDEGKWAKVRYEQLNFIEERRLTALCRGHLYQKKIARGYNKKVRHHHFQEGN 75
           L VIQE+ELDE KWA+VRYEQLNFIEERRLTALCRG LYQKKIAR YNKKVRH  FQEGN
Sbjct: 90  LRVIQELELDEAKWAQVRYEQLNFIEERRLTALCRGQLYQKKIARAYNKKVRHRQFQEGN 149

Query: 76  LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNAISTNYVKKYYA 135
           LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPN IS +YVKKYYA
Sbjct: 150 LVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNPISADYVKKYYA 209

[Close]

BLAST of Pay0008180 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 3.9e-42
Identity = 82/127 (64.57%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 9    LKLRCHPLGVIQEVELDEGKWAKVRYEQLNFIEERRLTALCRGHLYQKKIARGYNKKVRH 68
            L++    L V+ E +LDE +W + RYEQLNFIEE+RLTAL  G LYQK++ R YNKKV  
Sbjct: 2509 LEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSHGQLYQKRLMRAYNKKVHP 2568

Query: 69   HHFQEGNLVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALILTNMDGDDLPNAISTN 128
              F+EG+LVLKRILPF KDHRGKWTPNYEGP++VK+AFSGGAL+LTNMDG +L N ++++
Sbjct: 2569 RSFREGDLVLKRILPFLKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSD 2628

Query: 129  YVKKYYA 136
            YV++YYA
Sbjct: 2629 YVRRYYA 2635

The following BLAST results are available for this feature:

BLAST of Pay0008180 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0008180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UM09	7.2e-58	90.83	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00365...	[more]
A0A5D3D9Y9	2.1e-57	90.00	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G0002...	[more]
A0A5A7VAF2	2.7e-57	91.60	RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7SVL0	6.1e-57	90.83	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G0008...	[more]
A0A6P6BJJ8	2.7e-41	67.50	Ribonuclease H OS=Durio zibethinus OX=66656 GN=LOC111318622 PE=4 SV=1	[more]

BLAST of Pay0008180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054571.1	1.5e-57	90.83	Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK20386.1	4.3e-57	90.00	Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0065292.1	5.7e-57	91.60	RNA-directed DNA polymerase [Cucumis melo var. makuwa]	[more]
KAA0033219.1	1.3e-56	90.83	Pol polyprotein [Cucumis melo var. makuwa]	[more]
XP_031738551.1	3.9e-42	64.57	LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]	[more]

BLAST of Pay0008180 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0008180.1	Pay0008180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity