Pay0008138 (gene) Melon (Payzawat) v1

Overview


Name	Pay0008138
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol protein
Location	chr06: 27955650 .. 27956194 (+)
RNA-Seq Expression	Pay0008138
Synteny	Pay0008138

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGGTAGGGGATAAAGTGTTCTTAAAGGTAGCACCTATGAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCTCCATCACTCTCGACAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAAGAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGATGACATGAGGTCCCGTTATCCCGAACTGTTCGAGGAATAA

mRNA sequence

ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGGTAGGGGATAAAGTGTTCTTAAAGGTAGCACCTATGAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAACTTATCGCTTGGCGTTGCCTCCATCACTCTCGACAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAAGAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGATGACATGAGGTCCCGTTATCCCGAACTGTTCGAGGAATAA

Coding sequence (CDS)

ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGGTAGGGGATAAAGTGTTCTTAAAGGTAGCACCTATGAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAACTTATCGCTTGGCGTTGCCTCCATCACTCTCGACAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAAGAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGATGACATGAGGTCCCGTTATCCCGAACTGTTCGAGGAATAA

Protein sequence

MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKVSCVLKGGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

Homology

[Close]

BLAST of Pay0008138 vs. ExPASy TrEMBL
Match: A0A5A7VIQ0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.0e-74
Identity = 149/161 (92.55%), Postives = 150/161 (93.17%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKVSCVLK 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMK      
Sbjct: 210 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK------ 269

Query: 61  GGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARE 120
               YRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARE
Sbjct: 270 ---AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARE 329

Query: 121 VKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 162
           VKTLRNKEI LVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 330 VKTLRNKEISLVKVLWRNHRVEEATWEREDDMRSRYPELFE 361

[Close]

BLAST of Pay0008138 vs. ExPASy TrEMBL
Match: A0A5A7UB07 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4565G00010 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 152/181 (83.98%), Postives = 154/181 (85.08%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKVSCVLK 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMK     +
Sbjct: 88  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFE 147

Query: 61  -------------------GGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
                              G   YRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 148 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 207

Query: 121 EIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 163
           EIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 208 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 267

[Close]

BLAST of Pay0008138 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.5e-73
Identity = 151/181 (83.43%), Postives = 154/181 (85.08%), Query Frame = 0


Query: 1    MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKVSCVLK 60
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMK     +
Sbjct: 1268 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 1327

Query: 61   -------------------GGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
                               G   YRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 1328 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 1387

Query: 121  EIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 163
            EIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 1388 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 1447

[Close]

BLAST of Pay0008138 vs. ExPASy TrEMBL
Match: A0A5A7UMF1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2720G00010 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.5e-73
Identity = 151/181 (83.43%), Postives = 154/181 (85.08%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKVSCVLK 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMK     +
Sbjct: 88  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 147

Query: 61  -------------------GGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
                              G   YRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 148 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 207

Query: 121 EIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 163
           EIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 208 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 267

[Close]

BLAST of Pay0008138 vs. ExPASy TrEMBL
Match: A0A5D3CF08 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold383G00070 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.5e-73
Identity = 147/162 (90.74%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKVSCVLK 60
           M PELVQSTNEAIQKIRSRMHT QSRQKSYADVRRKDLEFEVGDKVFLKVAPM+      
Sbjct: 24  MSPELVQSTNEAIQKIRSRMHTTQSRQKSYADVRRKDLEFEVGDKVFLKVAPMR------ 83

Query: 61  GGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARE 120
               YRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVEVLARE
Sbjct: 84  ---AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLARE 143

Query: 121 VKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 163
           VKTLRNKEIPLVKVLW+NHRVEEATWEREDDMRSRYPELFEE
Sbjct: 144 VKTLRNKEIPLVKVLWQNHRVEEATWEREDDMRSRYPELFEE 176

[Close]

BLAST of Pay0008138 vs. NCBI nr
Match: KAA0068212.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 6.1e-74
Identity = 149/161 (92.55%), Postives = 150/161 (93.17%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKVSCVLK 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMK      
Sbjct: 210 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK------ 269

Query: 61  GGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARE 120
               YRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARE
Sbjct: 270 ---AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARE 329

Query: 121 VKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 162
           VKTLRNKEI LVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 330 VKTLRNKEISLVKVLWRNHRVEEATWEREDDMRSRYPELFE 361

[Close]

BLAST of Pay0008138 vs. NCBI nr
Match: KAA0050751.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.3e-73
Identity = 152/181 (83.98%), Postives = 154/181 (85.08%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKVSCVLK 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMK     +
Sbjct: 88  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFE 147

Query: 61  -------------------GGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
                              G   YRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 148 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 207

Query: 121 EIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 163
           EIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 208 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 267

[Close]

BLAST of Pay0008138 vs. NCBI nr
Match: KAA0054731.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.4 bits (729), Expect = 3.0e-73
Identity = 151/181 (83.43%), Postives = 154/181 (85.08%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKVSCVLK 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMK     +
Sbjct: 88  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 147

Query: 61  -------------------GGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
                              G   YRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 148 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 207

Query: 121 EIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 163
           EIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 208 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 267

[Close]

BLAST of Pay0008138 vs. NCBI nr
Match: KAA0051368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.4 bits (729), Expect = 3.0e-73
Identity = 151/181 (83.43%), Postives = 154/181 (85.08%), Query Frame = 0


Query: 1    MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKVSCVLK 60
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMK     +
Sbjct: 1268 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 1327

Query: 61   -------------------GGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
                               G   YRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 1328 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 1387

Query: 121  EIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 163
            EIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 1388 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 1447

[Close]

BLAST of Pay0008138 vs. NCBI nr
Match: KAA0061323.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 284.6 bits (727), Expect = 5.2e-73
Identity = 152/181 (83.98%), Postives = 154/181 (85.08%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMK------ 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPM+      
Sbjct: 27  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFE 86

Query: 61  -----VSCVLK--------GGETYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
                  C +         G   YRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 87  RRGKLSPCFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 146

Query: 121 EIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 163
           EIDENLSY EQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 147 EIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 206

The following BLAST results are available for this feature:

BLAST of Pay0008138 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0008138 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIQ0	3.0e-74	92.55	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 ...	[more]
A0A5A7UB07	1.1e-73	83.98	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4565G00010 P...	[more]
A0A5A7U7V9	1.5e-73	83.43	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UMF1	1.5e-73	83.43	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2720G00010 P...	[more]
A0A5D3CF08	2.5e-73	90.74	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold383G00070 PE...	[more]

BLAST of Pay0008138 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068212.1	6.1e-74	92.55	pol protein [Cucumis melo var. makuwa]	[more]
KAA0050751.1	2.3e-73	83.98	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054731.1	3.0e-73	83.43	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051368.1	3.0e-73	83.43	pol protein [Cucumis melo var. makuwa]	[more]
KAA0061323.1	5.2e-73	83.98	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0008138 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 13..158
None	No IPR available	PANTHER	PTHR46148:SF11	CCHC-TYPE INTEGRASE	coord: 13..158
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 74..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0008138.1	Pay0008138.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding