Pay0006908 (gene) Melon (Payzawat) v1

Overview


Name	Pay0006908
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Glutamate receptor
Location	chr11: 10291517 .. 10291983 (-)
RNA-Seq Expression	Pay0006908
Synteny	Pay0006908

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAATGATCCTCCCACTGTCGCTACGTGATTCTGTAAGTGTTCTTGATCGATTTTCTTGAAATCCCCGCAGTAAAATTTTGTTTTAGAAGTGGATTGATTGATGTCGAGTTTGTAATTCTATGTAATGTCCTGTTGCAGTTTAATTCAGTGACTGGAGTGTGGTTCCATGGAAAAGAATTTTGGGGTTCAGCGATTCTTAGCTTTGACAAGCAAATTAGTAAGGGGAGGTAAATTTTGTGTTGGTTGCTGTGAACTTGCAGTTGTTAAGTCTGTTCTGTAACAGTAGTGGTTTGGTGGACATTGTCGGAGAACTGCTCGGAGTTATAAGCATCGATCAACAATGATTGATGGGATCATCGGCGCAACCATCACCACTTTGTTAAACAGCTTTAGGGCGTCAAATCGGATGCGTGCATTAATTGGGAACAGTGTCCTGTTTTCGCTTAAAATCGTCTCCGAGTAA

mRNA sequence

ATGCAAATGATCCTCCCACTGTCGCTACGTGATTCTTTTAATTCAGTGACTGGAGTGTGGTTCCATGGAAAAGAATTTTGGGGTTCAGCGATTCTTAGCTTTGACAAGCAAATTAGTAAGGGGAGAACTGCTCGGAGTTATAAGCATCGATCAACAATGATTGATGGGATCATCGGCGCAACCATCACCACTTTGTTAAACAGCTTTAGGGCGTCAAATCGGATGCGTGCATTAATTGGGAACAGTGTCCTGTTTTCGCTTAAAATCGTCTCCGAGTAA

Coding sequence (CDS)

ATGCAAATGATCCTCCCACTGTCGCTACGTGATTCTTTTAATTCAGTGACTGGAGTGTGGTTCCATGGAAAAGAATTTTGGGGTTCAGCGATTCTTAGCTTTGACAAGCAAATTAGTAAGGGGAGAACTGCTCGGAGTTATAAGCATCGATCAACAATGATTGATGGGATCATCGGCGCAACCATCACCACTTTGTTAAACAGCTTTAGGGCGTCAAATCGGATGCGTGCATTAATTGGGAACAGTGTCCTGTTTTCGCTTAAAATCGTCTCCGAGTAA

Protein sequence

MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQISKGRTARSYKHRSTMIDGIIGATITTLLNSFRASNRMRALIGNSVLFSLKIVSE

Homology

[Close]

BLAST of Pay0006908 vs. ExPASy TrEMBL
Match: A0A5A7TN37 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00740 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.7e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQISKG 42
          MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQISKG
Sbjct: 1  MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQISKG 41

[Close]

BLAST of Pay0006908 vs. ExPASy TrEMBL
Match: A0A5D3DKR7 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00320 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.7e-13
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQI 39
          MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQI
Sbjct: 1  MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQI 38

[Close]

BLAST of Pay0006908 vs. NCBI nr
Match: KAA0043456.1 (glutamate receptor 3.7-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQISKG 42
          MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQISKG
Sbjct: 1  MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQISKG 41

[Close]

BLAST of Pay0006908 vs. NCBI nr
Match: TYK24226.1 (glutamate receptor 3.7-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 7.6e-13
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQI 39
          MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQI
Sbjct: 1  MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQI 38

[Close]

BLAST of Pay0006908 vs. NCBI nr
Match: KAE8652291.1 (hypothetical protein Csa_021898 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 3  MILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQIS 40
          MILPLSLRDSFNSVTGVWF G+EFWGSAILSFDKQIS
Sbjct: 1  MILPLSLRDSFNSVTGVWFDGEEFWGSAILSFDKQIS 37

[Close]

BLAST of Pay0006908 vs. NCBI nr
Match: KAG7010730.1 (hypothetical protein SDJN02_27526, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-06
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1   MQMILPLSLRDSFNSVTGVWFH---GKEFWGSAILSFDKQIS 40
           M+M+LPLSLRDSFNSVT VWF+   GK+ +GSAIL FDK+IS
Sbjct: 97  MRMVLPLSLRDSFNSVTEVWFNGSRGKKLYGSAILRFDKEIS 138

The following BLAST results are available for this feature:

BLAST of Pay0006908 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0006908 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TN37	6.7e-15	100.00	Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G...	[more]
A0A5D3DKR7	3.7e-13	100.00	Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00...	[more]

BLAST of Pay0006908 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043456.1	1.4e-14	100.00	glutamate receptor 3.7-like [Cucumis melo var. makuwa]	[more]
TYK24226.1	7.6e-13	100.00	glutamate receptor 3.7-like [Cucumis melo var. makuwa]	[more]
KAE8652291.1	1.2e-10	94.59	hypothetical protein Csa_021898 [Cucumis sativus]	[more]
KAG7010730.1	3.1e-06	71.43	hypothetical protein SDJN02_27526, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Pay0006908 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0006908.1	Pay0006908.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015276	ligand-gated ion channel activity