Pay0006763 (gene) Melon (Payzawat) v1

Overview


Name	Pay0006763
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	PSII 6.1 kDa protein
Location	chr05: 1646663 .. 1648092 (-)
RNA-Seq Expression	Pay0006763
Synteny	Pay0006763

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACCGATGCAAATGGATGTGAGGTACACGTGGAGAGCAAATATTGGATGAATAAGGATTGAGTATACAAACTCTTTGGCTGTTCTCATATCCAAACTGTGTGGTGCATAAAAATGAAAACTTTTCATTACCCTCAACTTAAAAACACAAAGAAAAAAACACGAGATCCAAGTTTTACAGCCAAACAAAAGCCTTTCCCTTCATCCTCAAGCAGGTGTTTTTAGCTGCAAACATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGACCATCCAAGCTTCTTCCATCCTCAACAATGGCAGCTCACAGTAAGTTTCTTCGTTTCCAAACAGCTTTTTCACTACTTTTTGTTACCCAATTACAGAAAAAGCTTCAACCTTCTTACTCTTCCTTTCAACAACTGAACTGGGTTTTGACCCAATTTTTAAAATCGCTTTGAAATCCCAAGAGAAATTTTGGTTGTATGAAAAGAGCAATCAAAAGTGTAGAACCAAAATTTTTGTTGATTTTGAATGGTGGAAAAGCATGTTTGAGAACTGAGAGTGATTTTCAATAGGACAAAGGTGATTTTAGCAATCTCAAAATCACTCCCAAACAAGTCTCTAGTTTCTCATTAATTAACATGTTTTGATCAAATATGTTCAATATAGACAATAAGTTTAGATTTGACAAAGAATATGTGTGAAACATGAAAGGTTAAATTGGGTCGACTTTTGTTCAATCCTGCCTTTTCCCTTTTGCTTTCCGTCTTGATGGACCGACAAACTTCATTATCGAATAAGGAGGAAATAAGTAAGAGGGAGTATGGTGTGTACATTTTTATCTAAACATAGTTCCACTGATCTAAACATACATTTTAACTGATATAGCGTACTTTTTCCAGGGTTGCCCACGTTGCAAAAGATGAAGATGGGAAGGATAAAATGTAAGGTGGAAGAGAAGCCAGAAGGGAAGAAGTCAGAAGAAAGCATGGTTCCGGGGACAGTGGCCGCAGTGGCGATGGCTGCATTGGCGGCGGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGATGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGGGATGTTTGGTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCTCTTTGAATCAATCACCCAAATTTCTTAAAATGGAAGTAATGGTTGTATTCATTTTTTCACCGTTCACCCAATTGCTCAGTTCAACCATAACTTTTCATGTATTAATTCCAAGTATACATATCTACATTTTCTGCTCAATCATTGTACAAAATTGTTGATTACTGAGATAGATTATTTTTAATTATATTTTAATAAAAAGATGAGATAGGAAGATTTTGAAACTTTAA

mRNA sequence

TCACCGATGCAAATGGATGTGAGGTACACGTGGAGAGCAAATATTGGATGAATAAGGATTGAGTATACAAACTCTTTGGCTGTTCTCATATCCAAACTGTGTGGTGCATAAAAATGAAAACTTTTCATTACCCTCAACTTAAAAACACAAAGAAAAAAACACGAGATCCAAGTTTTACAGCCAAACAAAAGCCTTTCCCTTCATCCTCAAGCAGGTGTTTTTAGCTGCAAACATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGACCATCCAAGCTTCTTCCATCCTCAACAATGGCAGCTCACAGGTTGCCCACGTTGCAAAAGATGAAGATGGGAAGGATAAAATGTAAGGTGGAAGAGAAGCCAGAAGGGAAGAAGTCAGAAGAAAGCATGGTTCCGGGGACAGTGGCCGCAGTGGCGATGGCTGCATTGGCGGCGGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGATGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGGGATGTTTGGTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCTCTTTGAATCAATCACCCAAATTTCTTAAAATGGAAGTAATGGTTGTATTCATTTTTTCACCGTTCACCCAATTGCTCAGTTCAACCATAACTTTTCATGTATTAATTCCAAGTATACATATCTACATTTTCTGCTCAATCATTGTACAAAATTGTTGATTACTGAGATAGATTATTTTTAATTATATTTTAATAAAAAGATGAGATAGGAAGATTTTGAAACTTTAA

Coding sequence (CDS)

ATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGACCATCCAAGCTTCTTCCATCCTCAACAATGGCAGCTCACAGGTTGCCCACGTTGCAAAAGATGAAGATGGGAAGGATAAAATGTAAGGTGGAAGAGAAGCCAGAAGGGAAGAAGTCAGAAGAAAGCATGGTTCCGGGGACAGTGGCCGCAGTGGCGATGGCTGCATTGGCGGCGGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGATGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGGGATGTTTGGTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCTCTTTGA

Protein sequence

MASTLLPHSRLLLKGPSKLLPSSTMAAHRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

Homology

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BLAST of Pay0006763 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.6e-25
Identity = 69/136 (50.74%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 3   STLLPHSRLLLKGPSKLLPSSTMAAHRLPTL---QKMKMGRIKCKVEEKPEGKKSEESMV 62
           +T+   S   L   + L+ +S +     P L      K  ++ C +E KP   ++  +  
Sbjct: 2   ATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTN 61

Query: 63  PGTVAAVAMAALAA--AGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYF 122
               A++  AA AA  + PA+ALVDERMSTEGTGLPFGLSNNLLGWIL G+FGLIWALYF
Sbjct: 62  KSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYF 121

Query: 123 VYASSLDEDEDSGLSL 134
           VYAS L+EDE+SGLSL
Sbjct: 122 VYASGLEEDEESGLSL 137

[Close]

BLAST of Pay0006763 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 6.5e-24
Identity = 74/136 (54.41%), Postives = 90/136 (66.18%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGPSKLL-PSSTMAAHRLPTLQKMKMGRIKCKVEEKPEGKKSEESMV 60
           MAS     S +    P+ LL P+  ++A   P L    MG+ K  V    E K+   S++
Sbjct: 1   MASFTASASTVSAARPALLLKPTVAISA---PVLGLPPMGKKKGGVRCSMETKQGNVSVM 60

Query: 61  PGTVAAVAMAALAA--AGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYF 120
              V+A A AAL A  + PA+ALVDERMSTEGTGLPFGLSNNLLGWIL G+FGLIW  +F
Sbjct: 61  GAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFF 120

Query: 121 VYASSLDEDEDSGLSL 134
           VY SSL+EDE+SGLSL
Sbjct: 121 VYTSSLEEDEESGLSL 133

[Close]

BLAST of Pay0006763 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-19
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 30  LPTLQKMKMGRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEG 89
           LP ++  +  R++C   ++     +  + V G  A++ +A  A A PA+ALVDERMSTEG
Sbjct: 24  LPQMRARRSERVRCNYSKE---AATPAAAVKGAGASL-LAMAATAAPAMALVDERMSTEG 83

Query: 90  TGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSG 131
           TGL  GLSNNLLGWIL G+FGLIW+LY +Y S L+EDE+SG
Sbjct: 84  TGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

[Close]

BLAST of Pay0006763 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-11
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 68  MAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLD--E 127
           + A  AA PA ALVDERM+ +GTG PFG+++ +LGW+L G+FG +WA++F+    L   E
Sbjct: 48  LPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFE 107

Query: 128 DEDSGLSL 134
           D D GL L
Sbjct: 108 DADDGLKL 115

[Close]

BLAST of Pay0006763 vs. ExPASy TrEMBL
Match: A0A1S3C2B0 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGPSKLLPSSTMAAHRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60
           MASTLLPHSRLLLKG SKLLPSSTMAA RLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60

Query: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120
           GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA
Sbjct: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSLDEDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of Pay0006763 vs. ExPASy TrEMBL
Match: A0A1S4E257 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.6e-57
Identity = 130/155 (83.87%), Postives = 130/155 (83.87%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGPSKLLPSSTMAAHR----------------------LPTLQKMKM 60
           MASTLLPHSRLLLKG SKLLPSSTMAA                        LPTLQKMKM
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPTFSLLLSVLMDRQISLSNKEEIGLPTLQKMKM 60

Query: 61  GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN 120
           GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN
Sbjct: 61  GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN 120

Query: 121 NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 134
           NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 155

[Close]

BLAST of Pay0006763 vs. ExPASy TrEMBL
Match: A0A0A0LJA2 (PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 9.6e-55
Identity = 122/134 (91.04%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGPSKLLPSSTMAAHRLPTLQKMKMGRIKCKVEEKPEGKK-SEESMV 60
           MASTLLPHSRLLLKG SKLL S TMAAHRLPTLQKMK G IKC VEEKPEGKK SEESMV
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  PGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVY 120
           PGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNLLGWILA +F LIWALYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 134
           ASSLDEDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of Pay0006763 vs. ExPASy TrEMBL
Match: A0A6J1FBR0 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.1e-47
Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGPSKLLPSSTMAAHRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60
           MASTLL HS + LKG  KLLP   MAAHRLP +QKMK G IKCK+EEK EGK+S+ES++ 
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60

Query: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120
           GTVAA+A   +A AGPAVALVDER+STEGTGLPFGLSNNLLGWILAGMFG IWALYFVYA
Sbjct: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of Pay0006763 vs. ExPASy TrEMBL
Match: A0A6J1KED2 (PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111493586 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.3e-46
Identity = 107/133 (80.45%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGPSKLLPSSTMAAHRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60
           MAS+LL  SR+LLKG S +LPS  MAAHRLP   KMK   IKCK EEK EGK+SEE MV 
Sbjct: 1   MASSLLSPSRILLKGSSMILPSPLMAAHRLP---KMKRRAIKCKAEEKREGKRSEERMVS 60

Query: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120
           GTVAAVAMA +AAAGPAVALVDER+STEGTGLPFGLSNNLLGWIL GMFGLIW+LYFVYA
Sbjct: 61  GTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSLDED+DSGLSL
Sbjct: 121 SSLDEDDDSGLSL 130

[Close]

BLAST of Pay0006763 vs. NCBI nr
Match: XP_008456049.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGPSKLLPSSTMAAHRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60
           MASTLLPHSRLLLKG SKLLPSSTMAA RLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60

Query: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120
           GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA
Sbjct: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSLDEDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of Pay0006763 vs. NCBI nr
Match: XP_016902308.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 9.5e-57
Identity = 130/155 (83.87%), Postives = 130/155 (83.87%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGPSKLLPSSTMAAHR----------------------LPTLQKMKM 60
           MASTLLPHSRLLLKG SKLLPSSTMAA                        LPTLQKMKM
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPTFSLLLSVLMDRQISLSNKEEIGLPTLQKMKM 60

Query: 61  GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN 120
           GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN
Sbjct: 61  GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN 120

Query: 121 NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 134
           NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 155

[Close]

BLAST of Pay0006763 vs. NCBI nr
Match: XP_004139238.1 (photosystem II reaction center W protein, chloroplastic [Cucumis sativus] >KGN60797.1 hypothetical protein Csa_019406 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 2.0e-54
Identity = 122/134 (91.04%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGPSKLLPSSTMAAHRLPTLQKMKMGRIKCKVEEKPEGKK-SEESMV 60
           MASTLLPHSRLLLKG SKLL S TMAAHRLPTLQKMK G IKC VEEKPEGKK SEESMV
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  PGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVY 120
           PGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNLLGWILA +F LIWALYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 134
           ASSLDEDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of Pay0006763 vs. NCBI nr
Match: XP_038890119.1 (photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 220.3 bits (560), Expect = 9.8e-54
Identity = 117/133 (87.97%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGPSKLLPSSTMAAHRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60
           MASTLL HSRLLLKG SK+LPS  +AAHRLP LQKMK G IKC+VEEKPEGKKSEES+V 
Sbjct: 1   MASTLLSHSRLLLKGSSKVLPSPPVAAHRLPMLQKMKKGGIKCRVEEKPEGKKSEESLVS 60

Query: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120
           GT+AAVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNLLGWILAG+F LIWALYFVYA
Sbjct: 61  GTMAAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFALIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSLDEDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of Pay0006763 vs. NCBI nr
Match: XP_022937622.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata] >KAG6586311.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021160.1 Photosystem II reaction center W protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.1 bits (505), Expect = 2.3e-47
Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGPSKLLPSSTMAAHRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60
           MASTLL HS + LKG  KLLP   MAAHRLP +QKMK G IKCK+EEK EGK+S+ES++ 
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60

Query: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120
           GTVAA+A   +A AGPAVALVDER+STEGTGLPFGLSNNLLGWILAGMFG IWALYFVYA
Sbjct: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of Pay0006763 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 111.7 bits (278), Expect = 4.6e-25
Identity = 74/136 (54.41%), Postives = 90/136 (66.18%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGPSKLL-PSSTMAAHRLPTLQKMKMGRIKCKVEEKPEGKKSEESMV 60
           MAS     S +    P+ LL P+  ++A   P L    MG+ K  V    E K+   S++
Sbjct: 1   MASFTASASTVSAARPALLLKPTVAISA---PVLGLPPMGKKKGGVRCSMETKQGNVSVM 60

Query: 61  PGTVAAVAMAALAA--AGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYF 120
              V+A A AAL A  + PA+ALVDERMSTEGTGLPFGLSNNLLGWIL G+FGLIW  +F
Sbjct: 61  GAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFF 120

Query: 121 VYASSLDEDEDSGLSL 134
           VY SSL+EDE+SGLSL
Sbjct: 121 VYTSSLEEDEESGLSL 133

The following BLAST results are available for this feature:

BLAST of Pay0006763 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41387	7.6e-25	50.74	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q39194	6.5e-24	54.41	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q5ZBY9	1.3e-19	52.48	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	1.6e-11	51.47	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of Pay0006763 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2B0	1.4e-61	98.50	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A1S4E257	4.6e-57	83.87	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A0A0LJA2	9.6e-55	91.04	PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1	[more]
A0A6J1FBR0	1.1e-47	78.20	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1	[more]
A0A6J1KED2	1.3e-46	80.45	PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111493586 PE=3 SV=1	[more]

BLAST of Pay0006763 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456049.1	2.9e-61	98.50	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]
XP_016902308.1	9.5e-57	83.87	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]
XP_004139238.1	2.0e-54	91.04	photosystem II reaction center W protein, chloroplastic [Cucumis sativus] >KGN60...	[more]
XP_038890119.1	9.8e-54	87.97	photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]	[more]
XP_022937622.1	2.3e-47	78.20	photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata...	[more]

BLAST of Pay0006763 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	4.6e-25	54.41	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 25..133 e-value: 4.9E-44 score: 149.5
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 2..133
None	No IPR available	PANTHER	PTHR34552:SF5	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC-LIKE	coord: 2..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0006763.1	Pay0006763.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast