Pay0006392 (gene) Melon (Payzawat) v1

Overview


Name	Pay0006392
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribonuclease H
Location	chr02: 16790484 .. 16791455 (-)
RNA-Seq Expression	Pay0006392
Synteny	Pay0006392

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCCGATGGGAAGTGGTACCCTTTAACTGCTAAGTTATATTTTGATTGCACCAATAATATGGCTGAGTATGAGGCGTGTAGTATGGGAGTGCAAATGGAATACGAGATGAAAGTAAAAAAATTACGAGTCCTTGGGGACTCCCTGTTGGTTGTACATCAGCTGAATGGGGAATGGGAGACAAGGGATGCTAAATTGATCCCTTATAACGATTATATTCGCACAATAGCGCAAACTTTTTATTCAATAACTTTTGAACACGTCCCACGCGAAAGCAATCAGGTTGCAGATGCATTAGCCACTTTTTCTGCCATGTTTAATGTAGCTTACAGTGAAGAAGTTCAACCCATAAGGATGGAGAAGTATAAGACACCATCCTATTGTATGAGCCTCGAGCGGGAACCTGACGGTAAATCTTGGTATCATGATATTAAGCACTACATCGCATATCGGGAGTATCCACCAGGGGCATCAAAAAATAGTAAGCGCACCATTAAGAGGTTAGCCATGAAGTTCTTTCTAAATGGTGAAGTATTATACAAAAGAAATTAATTACGATATGACTCTATTGCGATGTGTCGATGCCTTGGAAGCCGAAAAGATTTAGAAGAAATTCATGAAGGAGTGTGTGGGACGCATGCGAATGGACACATGATGGCGAGGCAAATTTTACGTGCTGGTTATTTTTGGTTGACCATGGAGTCAGACTGCATCAAATATGTGAGAAGATGCCATAAATGTCAAATATACGCAGATAAAGTGCATGCTCCAGCCTCTCCATTGCATGTGTTGACGGCTCCATGGCCTTTCTCCATGTGGGGCTTGGATGTAATTGGACCCATTGAGCGAAAGGCATCAAATGGCCATCGATTCATTTTGGTAGCCATAGATTATTTCACGAAATGGGTAGAGGCTGCTTCCTACAAAAGTGTCACCAAGCAGGCCGTTGTCAAGTATGGTTTACCTTAG

mRNA sequence

ATGTCTCCCGATGGGAAGTGGTACCCTTTAACTGCTAAGTTATATTTTGATTGCACCAATAATATGGCTGAGTATGAGGCGTGTAGTATGGGAGTGCAAATGGAATACGAGATGAAAGTAAAAAAATTACGAGTCCTTGGGGACTCCCTGTTGGTTGTACATCAGCTGAATGGGGAATGGGAGACAAGGGATGCTAAATTGATCCCTTATAACGATTATATTCGCACAATAGCGCAAACTTTTTATTCAATAACTTTTGAACACGTCCCACGCGAAAGCAATCAGGTTGCAGATGCATTAGCCACTTTTTCTGCCATGTTTAATGTAGCTTACAGTGAAGAAGTTCAACCCATAAGGATGGAGAAGTATAAGACACCATCCTATTGTATGAGCCTCGAGCGGGAACCTGACGGTAAATCTTGGTATCATGATATTAAGCACTACATCGCATATCGGGAGTATCCACCAGGGGCATCAAAAAATAGTAAGCGCACCATTAAGAGGTTAGCCATGAAGTTCTTTCTAAATGGTGAATCAGACTGCATCAAATATGTGAGAAGATGCCATAAATGTCAAATATACGCAGATAAAGTGCATGCTCCAGCCTCTCCATTGCATGTGTTGACGGCTCCATGGCCTTTCTCCATGTGGGGCTTGGATGTAATTGGACCCATTGAGCGAAAGGCATCAAATGGCCATCGATTCATTTTGGTAGCCATAGATTATTTCACGAAATGGGTAGAGGCTGCTTCCTACAAAAGTGTCACCAAGCAGGCCGTTGTCAAGTATGGTTTACCTTAG

Coding sequence (CDS)

ATGTCTCCCGATGGGAAGTGGTACCCTTTAACTGCTAAGTTATATTTTGATTGCACCAATAATATGGCTGAGTATGAGGCGTGTAGTATGGGAGTGCAAATGGAATACGAGATGAAAGTAAAAAAATTACGAGTCCTTGGGGACTCCCTGTTGGTTGTACATCAGCTGAATGGGGAATGGGAGACAAGGGATGCTAAATTGATCCCTTATAACGATTATATTCGCACAATAGCGCAAACTTTTTATTCAATAACTTTTGAACACGTCCCACGCGAAAGCAATCAGGTTGCAGATGCATTAGCCACTTTTTCTGCCATGTTTAATGTAGCTTACAGTGAAGAAGTTCAACCCATAAGGATGGAGAAGTATAAGACACCATCCTATTGTATGAGCCTCGAGCGGGAACCTGACGGTAAATCTTGGTATCATGATATTAAGCACTACATCGCATATCGGGAGTATCCACCAGGGGCATCAAAAAATAGTAAGCGCACCATTAAGAGGTTAGCCATGAAGTTCTTTCTAAATGGTGAATCAGACTGCATCAAATATGTGAGAAGATGCCATAAATGTCAAATATACGCAGATAAAGTGCATGCTCCAGCCTCTCCATTGCATGTGTTGACGGCTCCATGGCCTTTCTCCATGTGGGGCTTGGATGTAATTGGACCCATTGAGCGAAAGGCATCAAATGGCCATCGATTCATTTTGGTAGCCATAGATTATTTCACGAAATGGGTAGAGGCTGCTTCCTACAAAAGTGTCACCAAGCAGGCCGTTGTCAAGTATGGTTTACCTTAG

Protein sequence

MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGASKNSKRTIKRLAMKFFLNGESDCIKYVRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKYGLP

Homology

[Close]

BLAST of Pay0006392 vs. ExPASy Swiss-Prot
Match: P9WLH5 (Bifunctional protein Rv2228c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv2228c PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-07
Identity = 36/111 (32.43%), Postives = 55/111 (49.55%), Query Frame = 0


Query: 19  TNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIA 78
           TNN+AEY     G+    ++   +  VL DS LVV Q++G W+ +   L+      + +A
Sbjct: 44  TNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALA 103

Query: 79  QTFYSITFEHVPRESNQVADALATFSAMFNVAYS--EEVQPIRMEKYKTPS 128
             F  I +E VPR  N  AD LA   AM   A S   +  P ++   ++P+
Sbjct: 104 SQFRRINYEWVPRARNTYADRLAN-DAMDAAAQSAAADADPAKIVATESPT 153

[Close]

BLAST of Pay0006392 vs. ExPASy Swiss-Prot
Match: P9WLH4 (Uncharacterized protein MT2287 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT2287 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-07
Identity = 36/111 (32.43%), Postives = 55/111 (49.55%), Query Frame = 0


Query: 19  TNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIA 78
           TNN+AEY     G+    ++   +  VL DS LVV Q++G W+ +   L+      + +A
Sbjct: 44  TNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALA 103

Query: 79  QTFYSITFEHVPRESNQVADALATFSAMFNVAYS--EEVQPIRMEKYKTPS 128
             F  I +E VPR  N  AD LA   AM   A S   +  P ++   ++P+
Sbjct: 104 SQFRRINYEWVPRARNTYADRLAN-DAMDAAAQSAAADADPAKIVATESPT 153

[Close]

BLAST of Pay0006392 vs. ExPASy Swiss-Prot
Match: P64956 (Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB2253C PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-07
Identity = 36/111 (32.43%), Postives = 55/111 (49.55%), Query Frame = 0


Query: 19  TNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIA 78
           TNN+AEY     G+    ++   +  VL DS LVV Q++G W+ +   L+      + +A
Sbjct: 44  TNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALA 103

Query: 79  QTFYSITFEHVPRESNQVADALATFSAMFNVAYS--EEVQPIRMEKYKTPS 128
             F  I +E VPR  N  AD LA   AM   A S   +  P ++   ++P+
Sbjct: 104 SQFRRINYEWVPRARNTYADRLAN-DAMDAAAQSAAADADPAKIVATESPT 153

[Close]

BLAST of Pay0006392 vs. ExPASy Swiss-Prot
Match: Q9HSF6 (Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091 GN=rnhA PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.9e-07
Identity = 31/83 (37.35%), Postives = 42/83 (50.60%), Query Frame = 0


Query: 19  TNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIA 78
           TNN AEY+A    ++   +     + + GDS LV  QL G W+T D  L       R + 
Sbjct: 110 TNNQAEYDALIAALEAAADFGFDDIELRGDSQLVEKQLTGAWDTNDPDLRRKRVRARELL 169

Query: 79  QTFYSITFEHVPRESNQVADALA 102
             F   +  HVPR +N+ ADALA
Sbjct: 170 TGFDDWSITHVPRATNERADALA 192

[Close]

BLAST of Pay0006392 vs. ExPASy Swiss-Prot
Match: Q9P2P1 (Protein NYNRIN OS=Homo sapiens OX=9606 GN=NYNRIN PE=2 SV=3)

HSP 1 Score: 52.8 bits (125), Expect = 7.1e-06
Identity = 34/117 (29.06%), Postives = 58/117 (49.57%), Query Frame = 0


Query: 153  EYPPGASKNSKRTIKRLAMKFFLNGESDCIK-YVRRCHKCQIYADKVHAPASPLHVLTAP 212
            + P GA +  + T K+L +  +  G  + +K Y R C    ++    +   S L V+ +P
Sbjct: 1550 DIPLGAHQRPEETYKKLRLLGWWPGMQEHVKDYCRSC----LFCIPRNLIGSELKVIESP 1609

Query: 213  W------PFSMWGLDVIGPIERKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVK 263
            W      P+S   ++V+GP+   +  GH+ +L+  D  T+WVEA   K  T  AV +
Sbjct: 1610 WPLRSTAPWSNLQIEVVGPV-TISEEGHKHVLIVADPNTRWVEAFPLKPYTHTAVAQ 1661

[Close]

BLAST of Pay0006392 vs. ExPASy TrEMBL
Match: A0A5A7TZF3 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001550 PE=4 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.1e-146
Identity = 261/322 (81.06%), Postives = 265/322 (82.30%), Query Frame = 0


Query: 1   MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEW 60
           MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGV+M YEMKVKKLRVLGDSLLVVHQLNGEW
Sbjct: 512 MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKVKKLRVLGDSLLVVHQLNGEW 571

Query: 61  ETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRM 120
           ETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRM
Sbjct: 572 ETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRM 631

Query: 121 EKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGASKNSKRTIKRLAMKFFLNG--- 180
           EKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGAS+NSKRTI+RLAMKFFL+G   
Sbjct: 632 EKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGASENSKRTIRRLAMKFFLSGEVL 691

Query: 181 -----------------------------------------------------ESDCIKY 240
                                                                ESDCIKY
Sbjct: 692 YKRNYDMTLLRCVDALEAKIFLEEIHEGVCGTHANGHMMARQILRAGYFWLTMESDCIKY 751

Query: 241 VRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFT 267
           VRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFT
Sbjct: 752 VRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFT 811

[Close]

BLAST of Pay0006392 vs. ExPASy TrEMBL
Match: A0A5A7U7X5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001520 PE=4 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 4.9e-135
Identity = 242/319 (75.86%), Postives = 252/319 (79.00%), Query Frame = 0


Query: 1    MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEW 60
            MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGV+M YEMK+KKLRVLGDS+LVVHQLNGEW
Sbjct: 728  MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGDSMLVVHQLNGEW 787

Query: 61   ETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRM 120
            ETRDAKLIPYNDYI TIAQTF SITFEHVPRESNQV DALAT SAMFNVAYSE VQPIRM
Sbjct: 788  ETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRM 847

Query: 121  EKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGASKNSKRTIKRLAMKFFLNG--- 180
            EKYKTPSYCMSLEREP+GK WYHDIKHYIAYREYPPGAS+NSKRTI+RLAM+FFLNG   
Sbjct: 848  EKYKTPSYCMSLEREPNGKRWYHDIKHYIAYREYPPGASENSKRTIRRLAMEFFLNGEVL 907

Query: 181  -----------------------------------------------------ESDCIKY 240
                                                                 ES+CIKY
Sbjct: 908  YKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKY 967

Query: 241  VRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFT 264
            VRRC+KCQIYADK HAP  PLHVLTAPWPFSMWGLDVIGPIE KASNGHRFILVAIDYFT
Sbjct: 968  VRRCYKCQIYADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFT 1027

[Close]

BLAST of Pay0006392 vs. ExPASy TrEMBL
Match: A0A5A7SQN1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00090 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.3e-121
Identity = 223/298 (74.83%), Postives = 232/298 (77.85%), Query Frame = 0


Query: 22  MAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTF 81
           MAEYEACSMGV+M YEMKVK+LRVLGDSLL VHQLNGEWETRDAKLIPYNDYIRTIAQTF
Sbjct: 1   MAEYEACSMGVRMAYEMKVKQLRVLGDSLLGVHQLNGEWETRDAKLIPYNDYIRTIAQTF 60

Query: 82  YSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDGKSW 141
            SITFEHVP ESNQVADALAT SAMFNVAYSEEVQPIRMEKYKTPSYCMSLER+PDGK W
Sbjct: 61  DSITFEHVPCESNQVADALATLSAMFNVAYSEEVQPIRMEKYKTPSYCMSLERKPDGKPW 120

Query: 142 YHDIKHYIAYREYPPGASKNSKRTIKRLAMKFFLNG------------------------ 201
           YHDIKHYIAYREYP G S+NSKRT++RLAMKFFL+G                        
Sbjct: 121 YHDIKHYIAYREYPSGVSENSKRTVRRLAMKFFLSGEVLYKRNYDMTLLRCVDALKAKKS 180

Query: 202 --------------------------------ESDCIKYVRRCHKCQIYADKVHAPASPL 261
                                           ESDCIKYVRRCHKCQIYADK HAPASPL
Sbjct: 181 LEEIHEGVCGTHANGHMMARQILRAGYFWLTMESDCIKYVRRCHKCQIYADKTHAPASPL 240

Query: 262 HVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKY 264
           HVLTAPWPFSMWGLDVIGPIE KASNGHRFILVAIDYFTKWVEAASYKSVTKQAV+K+
Sbjct: 241 HVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVIKF 298

[Close]

BLAST of Pay0006392 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 2.1e-101
Identity = 184/331 (55.59%), Postives = 224/331 (67.67%), Query Frame = 0


Query: 1    MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEW 60
            +SP G+ YPL A+L FDC +NMAEYEACSMGVQ   +MKVKKL+V GDS+LV+HQL GEW
Sbjct: 1710 ISPKGELYPLIARLCFDCKHNMAEYEACSMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEW 1769

Query: 61   ETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRM 120
            ETRD KL+PY  +I  ++Q F  I+F+++PRE+NQVADALAT + MFN+  +E+V+PI++
Sbjct: 1770 ETRDVKLLPYKQFITELSQEFDEISFDYLPRENNQVADALATLAVMFNLELNEDVRPIKV 1829

Query: 121  EKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGASKNSKRTIKRLAMKFFLNG--- 180
             +   P+ CMS+E EPDGK W+HDIK YI  +EYPP AS+N KRT+++LA+KFFLNG   
Sbjct: 1830 GRRDVPASCMSIEEEPDGKPWFHDIKQYIKSKEYPPNASENDKRTLRKLAIKFFLNGEIL 1889

Query: 181  -----------------------------------------------------ESDCIKY 240
                                                                 E+DCIKY
Sbjct: 1890 YKRNHDMVLLRCVEGRDANRIMEEIHEGVCGTHANGHMMARQILRAGYYWLTIETDCIKY 1949

Query: 241  VRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFT 267
             R+CHKCQIY+DK HAPAS LH LTAPWPFSMWG+DVIGPIE KASNGH+FILVAIDYFT
Sbjct: 1950 ARKCHKCQIYSDKTHAPASHLHALTAPWPFSMWGMDVIGPIEPKASNGHQFILVAIDYFT 2009

[Close]

BLAST of Pay0006392 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 1.0e-100
Identity = 185/331 (55.89%), Postives = 220/331 (66.47%), Query Frame = 0


Query: 1    MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEW 60
            +SP G+ YPLTA+L FDCT+NMAEYEACSMGVQ   +MKVKKL+V GDS+LV+HQL GEW
Sbjct: 1600 ISPKGELYPLTARLCFDCTHNMAEYEACSMGVQAAVDMKVKKLKVFGDSMLVIHQLRGEW 1659

Query: 61   ETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRM 120
            ETRD KL+PY   I  ++Q F  ++F+++PRE+NQV DALAT + MFN+  +E+V PI++
Sbjct: 1660 ETRDVKLLPYKQLITELSQEFDEMSFDYLPRENNQVXDALATLAVMFNLELNEDVCPIKV 1719

Query: 121  EKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGASKNSKRTIKRLAMKFFLNGE-- 180
             +   P+ CMS+E EPDG  W+HDIK YI  +EYPP AS+N KRT ++LAMKFFLNGE  
Sbjct: 1720 GRRDVPASCMSIEEEPDGNPWFHDIKQYINSKEYPPNASENDKRTFRKLAMKFFLNGEIL 1779

Query: 181  ------------------------------------------------------SDCIKY 240
                                                                  +DCIKY
Sbjct: 1780 YKRNHDMVLLRCVEGRDANRIMEEVHEGVCDTHANGHMIARQILRAGYYWLTIXTDCIKY 1839

Query: 241  VRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFT 267
             R+CHKCQIYADK HAPAS LH LTAPWPFSMWG+DVIGPIE KASNGHRFILVAIDYFT
Sbjct: 1840 ARKCHKCQIYADKTHAPASHLHTLTAPWPFSMWGMDVIGPIEPKASNGHRFILVAIDYFT 1899

[Close]

BLAST of Pay0006392 vs. NCBI nr
Match: KAA0046609.1 (hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 528.1 bits (1359), Expect = 4.4e-146
Identity = 261/322 (81.06%), Postives = 265/322 (82.30%), Query Frame = 0


Query: 1   MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEW 60
           MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGV+M YEMKVKKLRVLGDSLLVVHQLNGEW
Sbjct: 512 MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKVKKLRVLGDSLLVVHQLNGEW 571

Query: 61  ETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRM 120
           ETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRM
Sbjct: 572 ETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRM 631

Query: 121 EKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGASKNSKRTIKRLAMKFFLNG--- 180
           EKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGAS+NSKRTI+RLAMKFFL+G   
Sbjct: 632 EKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGASENSKRTIRRLAMKFFLSGEVL 691

Query: 181 -----------------------------------------------------ESDCIKY 240
                                                                ESDCIKY
Sbjct: 692 YKRNYDMTLLRCVDALEAKIFLEEIHEGVCGTHANGHMMARQILRAGYFWLTMESDCIKY 751

Query: 241 VRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFT 267
           VRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFT
Sbjct: 752 VRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFT 811

[Close]

BLAST of Pay0006392 vs. NCBI nr
Match: KAA0049671.1 (uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12201.1 uncharacterized protein E5676_scaffold106G001520 [Cucumis melo var. makuwa])

HSP 1 Score: 490.3 bits (1261), Expect = 1.0e-134
Identity = 242/319 (75.86%), Postives = 252/319 (79.00%), Query Frame = 0


Query: 1    MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEW 60
            MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGV+M YEMK+KKLRVLGDS+LVVHQLNGEW
Sbjct: 728  MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGDSMLVVHQLNGEW 787

Query: 61   ETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRM 120
            ETRDAKLIPYNDYI TIAQTF SITFEHVPRESNQV DALAT SAMFNVAYSE VQPIRM
Sbjct: 788  ETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDALATLSAMFNVAYSENVQPIRM 847

Query: 121  EKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGASKNSKRTIKRLAMKFFLNG--- 180
            EKYKTPSYCMSLEREP+GK WYHDIKHYIAYREYPPGAS+NSKRTI+RLAM+FFLNG   
Sbjct: 848  EKYKTPSYCMSLEREPNGKRWYHDIKHYIAYREYPPGASENSKRTIRRLAMEFFLNGEVL 907

Query: 181  -----------------------------------------------------ESDCIKY 240
                                                                 ES+CIKY
Sbjct: 908  YKRNYGMTLLRCVDALETEKILEEIHEGVYRTHKNRHMMAMQVLRAGYFWLPMESNCIKY 967

Query: 241  VRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFT 264
            VRRC+KCQIYADK HAP  PLHVLTAPWPFSMWGLDVIGPIE KASNGHRFILVAIDYFT
Sbjct: 968  VRRCYKCQIYADKAHAPTFPLHVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFT 1027

[Close]

BLAST of Pay0006392 vs. NCBI nr
Match: KAA0033220.1 (putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa])

HSP 1 Score: 443.7 bits (1140), Expect = 1.1e-120
Identity = 223/298 (74.83%), Postives = 232/298 (77.85%), Query Frame = 0


Query: 22  MAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTF 81
           MAEYEACSMGV+M YEMKVK+LRVLGDSLL VHQLNGEWETRDAKLIPYNDYIRTIAQTF
Sbjct: 1   MAEYEACSMGVRMAYEMKVKQLRVLGDSLLGVHQLNGEWETRDAKLIPYNDYIRTIAQTF 60

Query: 82  YSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRMEKYKTPSYCMSLEREPDGKSW 141
            SITFEHVP ESNQVADALAT SAMFNVAYSEEVQPIRMEKYKTPSYCMSLER+PDGK W
Sbjct: 61  DSITFEHVPCESNQVADALATLSAMFNVAYSEEVQPIRMEKYKTPSYCMSLERKPDGKPW 120

Query: 142 YHDIKHYIAYREYPPGASKNSKRTIKRLAMKFFLNG------------------------ 201
           YHDIKHYIAYREYP G S+NSKRT++RLAMKFFL+G                        
Sbjct: 121 YHDIKHYIAYREYPSGVSENSKRTVRRLAMKFFLSGEVLYKRNYDMTLLRCVDALKAKKS 180

Query: 202 --------------------------------ESDCIKYVRRCHKCQIYADKVHAPASPL 261
                                           ESDCIKYVRRCHKCQIYADK HAPASPL
Sbjct: 181 LEEIHEGVCGTHANGHMMARQILRAGYFWLTMESDCIKYVRRCHKCQIYADKTHAPASPL 240

Query: 262 HVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVVKY 264
           HVLTAPWPFSMWGLDVIGPIE KASNGHRFILVAIDYFTKWVEAASYKSVTKQAV+K+
Sbjct: 241 HVLTAPWPFSMWGLDVIGPIEPKASNGHRFILVAIDYFTKWVEAASYKSVTKQAVIKF 298

[Close]

BLAST of Pay0006392 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 378.6 bits (971), Expect = 4.3e-101
Identity = 184/331 (55.59%), Postives = 224/331 (67.67%), Query Frame = 0


Query: 1    MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEW 60
            +SP G+ YPL A+L FDC +NMAEYEACSMGVQ   +MKVKKL+V GDS+LV+HQL GEW
Sbjct: 1710 ISPKGELYPLIARLCFDCKHNMAEYEACSMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEW 1769

Query: 61   ETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRM 120
            ETRD KL+PY  +I  ++Q F  I+F+++PRE+NQVADALAT + MFN+  +E+V+PI++
Sbjct: 1770 ETRDVKLLPYKQFITELSQEFDEISFDYLPRENNQVADALATLAVMFNLELNEDVRPIKV 1829

Query: 121  EKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGASKNSKRTIKRLAMKFFLNG--- 180
             +   P+ CMS+E EPDGK W+HDIK YI  +EYPP AS+N KRT+++LA+KFFLNG   
Sbjct: 1830 GRRDVPASCMSIEEEPDGKPWFHDIKQYIKSKEYPPNASENDKRTLRKLAIKFFLNGEIL 1889

Query: 181  -----------------------------------------------------ESDCIKY 240
                                                                 E+DCIKY
Sbjct: 1890 YKRNHDMVLLRCVEGRDANRIMEEIHEGVCGTHANGHMMARQILRAGYYWLTIETDCIKY 1949

Query: 241  VRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFT 267
             R+CHKCQIY+DK HAPAS LH LTAPWPFSMWG+DVIGPIE KASNGH+FILVAIDYFT
Sbjct: 1950 ARKCHKCQIYSDKTHAPASHLHALTAPWPFSMWGMDVIGPIEPKASNGHQFILVAIDYFT 2009

[Close]

BLAST of Pay0006392 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 376.3 bits (965), Expect = 2.1e-100
Identity = 185/331 (55.89%), Postives = 220/331 (66.47%), Query Frame = 0


Query: 1    MSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEW 60
            +SP G+ YPLTA+L FDCT+NMAEYEACSMGVQ   +MKVKKL+V GDS+LV+HQL GEW
Sbjct: 1600 ISPKGELYPLTARLCFDCTHNMAEYEACSMGVQAAVDMKVKKLKVFGDSMLVIHQLRGEW 1659

Query: 61   ETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQPIRM 120
            ETRD KL+PY   I  ++Q F  ++F+++PRE+NQV DALAT + MFN+  +E+V PI++
Sbjct: 1660 ETRDVKLLPYKQLITELSQEFDEMSFDYLPRENNQVXDALATLAVMFNLELNEDVCPIKV 1719

Query: 121  EKYKTPSYCMSLEREPDGKSWYHDIKHYIAYREYPPGASKNSKRTIKRLAMKFFLNGE-- 180
             +   P+ CMS+E EPDG  W+HDIK YI  +EYPP AS+N KRT ++LAMKFFLNGE  
Sbjct: 1720 GRRDVPASCMSIEEEPDGNPWFHDIKQYINSKEYPPNASENDKRTFRKLAMKFFLNGEIL 1779

Query: 181  ------------------------------------------------------SDCIKY 240
                                                                  +DCIKY
Sbjct: 1780 YKRNHDMVLLRCVEGRDANRIMEEVHEGVCDTHANGHMIARQILRAGYYWLTIXTDCIKY 1839

Query: 241  VRRCHKCQIYADKVHAPASPLHVLTAPWPFSMWGLDVIGPIERKASNGHRFILVAIDYFT 267
             R+CHKCQIYADK HAPAS LH LTAPWPFSMWG+DVIGPIE KASNGHRFILVAIDYFT
Sbjct: 1840 ARKCHKCQIYADKTHAPASHLHTLTAPWPFSMWGMDVIGPIEPKASNGHRFILVAIDYFT 1899

[Close]

BLAST of Pay0006392 vs. TAIR 10
Match: AT3G01410.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-10
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 17  DCTNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRT 76
           + TNN+AEY A  +G++   +   K + VLGDS+LV  Q+ G W+T   K+       + 
Sbjct: 193 NATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKE 252

Query: 77  IAQTFYSITFEHVPRESNQVADALATFSAMF 108
           +  +F +   +H+ RE N  AD  A  SA+F
Sbjct: 253 LMNSFKTFDIKHIAREKNSEADKQAN-SAIF 282

[Close]

BLAST of Pay0006392 vs. TAIR 10
Match: AT3G01410.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-10
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 17  DCTNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRT 76
           + TNN+AEY A  +G++   +   K + VLGDS+LV  Q+ G W+T   K+       + 
Sbjct: 193 NATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKE 252

Query: 77  IAQTFYSITFEHVPRESNQVADALATFSAMF 108
           +  +F +   +H+ RE N  AD  A  SA+F
Sbjct: 253 LMNSFKTFDIKHIAREKNSEADKQAN-SAIF 282

[Close]

BLAST of Pay0006392 vs. TAIR 10
Match: AT1G24090.1 (RNase H family protein )

HSP 1 Score: 52.4 bits (124), Expect = 6.6e-07
Identity = 28/86 (32.56%), Postives = 40/86 (46.51%), Query Frame = 0


Query: 19  TNNMAEYEACSMGVQMEYEMKVKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIA 78
           TNN AEY A  +G++   E   K ++V GDS LV  Q+ G+W+     L   +   + + 
Sbjct: 257 TNNAAEYHALILGLKYAIEKGYKNIKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLC 316

Query: 79  QTFYSITFEHVPRESNQVADALATFS 105
               S    HV R  N  AD  A  +
Sbjct: 317 NKCVSFEISHVLRNLNADADEQANLA 342

The following BLAST results are available for this feature:

BLAST of Pay0006392 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P9WLH5	3.8e-07	32.43	Bifunctional protein Rv2228c OS=Mycobacterium tuberculosis (strain ATCC 25618 / ...	[more]
P9WLH4	3.8e-07	32.43	Uncharacterized protein MT2287 OS=Mycobacterium tuberculosis (strain CDC 1551 / ...	[more]
P64956	3.8e-07	32.43	Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF...	[more]
Q9HSF6	4.9e-07	37.35	Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC...	[more]
Q9P2P1	7.1e-06	29.06	Protein NYNRIN OS=Homo sapiens OX=9606 GN=NYNRIN PE=2 SV=3	[more]

BLAST of Pay0006392 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZF3	2.1e-146	81.06	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00155...	[more]
A0A5A7U7X5	4.9e-135	75.86	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00152...	[more]
A0A5A7SQN1	5.3e-121	74.83	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00090...	[more]
A0A6J1D099	2.1e-101	55.59	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]
A0A6J1CNY7	1.0e-100	55.89	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1	[more]

BLAST of Pay0006392 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046609.1	4.4e-146	81.06	hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa]	[more]
KAA0049671.1	1.0e-134	75.86	uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12...	[more]
KAA0033220.1	1.1e-120	74.83	putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cu...	[more]
XP_022147189.1	4.3e-101	55.59	LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]	[more]
XP_022143495.1	2.1e-100	55.89	LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]	[more]

BLAST of Pay0006392 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01410.1	3.7e-10	35.16	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G01410.2	3.7e-10	35.16	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G24090.1	6.6e-07	32.56	RNase H family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 205..264 e-value: 8.9E-12 score: 46.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..114 e-value: 7.0E-25 score: 89.5
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 18..103 e-value: 6.5E-19 score: 68.0
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 1..106 score: 11.825809
None	No IPR available	PANTHER	PTHR46387	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 2..190
None	No IPR available	PANTHER	PTHR46387:SF5	DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H, PUTATIVE-RELATED	coord: 2..190
None	No IPR available	CDD	cd09279	RNase_HI_like	coord: 1..102 e-value: 7.53592E-35 score: 119.885
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 207..266 score: 8.841592
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 8..106
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 208..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0006392.1	Pay0006392.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0034061	DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity