Pay0005389 (gene) Melon (Payzawat) v1

Overview


Name	Pay0005389
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ran BP2/NZF zinc finger-like superfamily protein
Location	chr03: 26140880 .. 26142869 (-)
RNA-Seq Expression	Pay0005389
Synteny	Pay0005389

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAGTGAGTAATTGGTAAGCGAAAGGCAAAGCCAAAAACCTCGTTTTATTCTTCTCGATTTTCGAAATAAGAAAAAGAAAAAAGAAAAAAGAAAAAAAGAAAAATCCAAGTTCTTCACCGGTATAAAAACCACCACCACCGGCTAATTCACCAGAGAAACGTGATCAAGCCATTACAAACCAAACCGCCATCACCTTCAACTTCACGCAGAAGGTAACCCTTTCCGTTACTCATAGTTTTTTCTTCTTTTTAATCAAACCCTAAATTTCCCAGAACTAACACTAAATTTCCAGGAAAAAAGAAAAAAAATATCAACAAAAGGATGAGTCGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAAAGGAGAGATTCTTGTCAACGATGTGGAGACCCTAGGGCCGACTTCGGCGGCGGAAGCTACGGCGGTGGACGAGTTGGTGGTTCTTCATCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGGGATTGGTACTGCACCGTCGCTAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGTTTTAAGTGCGGCGCCACCAAGGATGAGACTTCCGCCGCCGCTTACGACGGCGATTTGCCCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGGTAGGGTTCTTCACTTTTCCTTTAAATTCCATTTCCATCCCCTCCACTTTCTTTAATTTTCTATTTTAGTCCTCAACTTTTCAAAATTTTCTAATATTCTCAATTTTATGTTATTTTACTGATTTTATTTATTACGGTTCTTTACCGGTAAAATTTTGAAATTGATAAAATTTGAGTTTTATTTCATTATTTTGTTGACGCTAATTAATTAACTGTGAGCTTCAAGTACATATTCAATTATCATCCCATTAAAATTTTAATTATTATTATTATTTTGTCGTCTATCGCGATTACTTAATAGCTTCGATCAACTTCAATAGTTTAAAATATTTATCTACAATTTTAGCTATTGTCGTTATTCTGTCGATATCATCATAACTTTAATGAACTTGTTGTCGTTTTTCTACCGATATCTTTGTAGCTTTAACGAACTTAGATACGATGTTAATACATACATTTAAAGTTACATTATTTTCTTTTTATATAAAAGATGACATTATTTATTGAATTAAAGGGTTTGGAGTAAGTTGTTTATTTTCTTTAGAATTTAGACATTAAAATAAATATTTTGATGGTCTAAAAGATGGATTGATTTTGCTTTTATTCAAGAGAGGGTTAAAATATATATGAGGAAGATTTTTTCGACTACTCGTTTTAAATTTTGATGTATATGGAACGACAGATCGGATTGCAATGAGCACAACTTTGCGAGTCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCTTAAAGGTAATTAATTAATTAATTTCCTTCAACAACATAAACAAATTACCATATTTATAAAATTGAACCGTTATATATATTAATAAAACTCATATTATTATTATTATTATAAATAAGTGGCATTTAATTATTTGTCATTCTAATATTATTATTTTGGGAATATTTTATTTTACAGGTGGTGCCAATGGAAGGAATAAATTCTAGCTAGAAAGAAGAGGAGAGTTTCCCATGATACCTGGAACGTCGTCGTTTTGATTTTTCCTTTTTTTGTACCCTCTCTATTTTTCAGTTTCAAAAGTGATTTAAGTGTCTCCTTTTTGACGGGGGAGCTTTAAATTTAGAAGAAGTATGAGATTTCTGCATGCATGCAGAAAAAAAAAAAAAAAAACTTTGGCAGTACCATTTTAATTAATTAATGAGGCCCCCTATCTTTGTATCCAATTTTCAAATTTATATTAGTAACCTATTTCAAAAAGGAAAAAAAAATTATATTAGTACCCATCTTTTATATTTTAATTAAT

mRNA sequence

GTCAGTGAGTAATTGGTAAGCGAAAGGCAAAGCCAAAAACCTCGTTTTATTCTTCTCGATTTTCGAAATAAGAAAAAGAAAAAAGAAAAAAGAAAAAAAGAAAAATCCAAGTTCTTCACCGGTATAAAAACCACCACCACCGGCTAATTCACCAGAGAAACGTGATCAAGCCATTACAAACCAAACCGCCATCACCTTCAACTTCACGCAGAAGGAAAAAAGAAAAAAAATATCAACAAAAGGATGAGTCGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAAAGGAGAGATTCTTGTCAACGATGTGGAGACCCTAGGGCCGACTTCGGCGGCGGAAGCTACGGCGGTGGACGAGTTGGTGGTTCTTCATCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGGGATTGGTACTGCACCGTCGCTAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGTTTTAAGTGCGGCGCCACCAAGGATGAGACTTCCGCCGCCGCTTACGACGGCGATTTGCCCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGCAATGAGCACAACTTTGCGAGTCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCTTAAAGGTGGTGCCAATGGAAGGAATAAATTCTAGCTAGAAAGAAGAGGAGAGTTTCCCATGATACCTGGAACGTCGTCGTTTTGATTTTTCCTTTTTTTGTACCCTCTCTATTTTTCAGTTTCAAAAGTGATTTAAGTGTCTCCTTTTTGACGGGGGAGCTTTAAATTTAGAAGAAGTATGAGATTTCTGCATGCATGCAGAAAAAAAAAAAAAAAAACTTTGGCAGTACCATTTTAATTAATTAATGAGGCCCCCTATCTTTGTATCCAATTTTCAAATTTATATTAGTAACCTATTTCAAAAAGGAAAAAAAAATTATATTAGTACCCATCTTTTATATTTTAATTAAT

Coding sequence (CDS)

ATGAGTCGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAAAGGAGAGATTCTTGTCAACGATGTGGAGACCCTAGGGCCGACTTCGGCGGCGGAAGCTACGGCGGTGGACGAGTTGGTGGTTCTTCATCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGGGATTGGTACTGCACCGTCGCTAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGTTTTAAGTGCGGCGCCACCAAGGATGAGACTTCCGCCGCCGCTTACGACGGCGATTTGCCCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGCAATGAGCACAACTTTGCGAGTCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCTTAA

Protein sequence

MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

Homology

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BLAST of Pay0005389 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-13
Identity = 75/256 (29.30%), Postives = 84/256 (32.81%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDP--------------RADFG-GGSYGGG------ 62
           RPGDWNC  C   NFQRR SC RC  P                DF  G SYG G      
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 63  RVGGS--------------------------SSFGFTTGPDVRPGDWYCTVANCGAHNFA 122
             GGS                          SS  F      R GDW C    CG HNFA
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFA 462

Query: 123 SRSICFKCGATKDETSAAA---------------YDGDLPRM------------------ 156
               C +CGA++   +  A               Y    P M                  
Sbjct: 463 KNVCCLRCGASRATAAVVADHASGPVNGSYSHNSYSHIPPVMSTSPPNHSVYPYSQLSIN 522

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BLAST of Pay0005389 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-05
Identity = 26/57 (45.61%), Postives = 30/57 (52.63%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDPRAD---FGGGSYGGGRVGGSSSFGFTTGPD 57
           R GDW C SCN+ NF  R+ C RC  P+ D     GG  GGG  GG    G+  G D
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGND 331

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BLAST of Pay0005389 vs. ExPASy Swiss-Prot
Match: P56959 (RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.1e-04
Identity = 33/99 (33.33%), Postives = 41/99 (41.41%), Query Frame = 0


Query: 30  RADFGGGSYGGGRVGGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGATKDE 89
           R  +GGG  GGG  GG  S G   G   R GDW C    C   NF+ R+ C +C A K +
Sbjct: 387 RGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPD 446

Query: 90  TSAAA---------YDGDLPRMRGFNFGGASNRPGWKSG 120
                         Y  D     G++ GG   R G + G
Sbjct: 447 GPGGGPGGSHMGGNYGDDRRGRGGYDRGGYRGRGGDRGG 485

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BLAST of Pay0005389 vs. ExPASy TrEMBL
Match: A0A0A0LLW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380050 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 2.8e-90
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG
Sbjct: 81  MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 140

Query: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD
Sbjct: 141 DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 200

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 201 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 235

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BLAST of Pay0005389 vs. ExPASy TrEMBL
Match: A0A1S3BBL4 (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103488288 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 2.8e-90
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155

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BLAST of Pay0005389 vs. ExPASy TrEMBL
Match: A0A6J1KQR0 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 GN=LOC111496351 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.0e-84
Identity = 147/155 (94.84%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGGG YGGGR GGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGGGYGGGR-GGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCGA+KDE SAAAYDGDL R+RGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

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BLAST of Pay0005389 vs. ExPASy TrEMBL
Match: A0A6J1GJE4 (TATA-binding protein-associated factor 2N-like OS=Cucurbita moschata OX=3662 GN=LOC111454402 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.3e-82
Identity = 145/155 (93.55%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG  YGGGR GGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGR-GGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCGA+KDE SAAAYDGDL R+RGFNFGGASN PGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNCPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

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BLAST of Pay0005389 vs. ExPASy TrEMBL
Match: A0A6J1BUS6 (uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=3673 GN=LOC111004930 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.3e-81
Identity = 138/155 (89.03%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGGG YGG    GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYC + NCGAHNFASRSICFKCGA KD+ SA AYDGD+PRMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSN  SPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNGNSPYS 155

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BLAST of Pay0005389 vs. NCBI nr
Match: XP_004138734.1 (uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus] >XP_008445181.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >KAE8652195.1 hypothetical protein Csa_022624 [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 5.8e-90
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155

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BLAST of Pay0005389 vs. NCBI nr
Match: XP_038884423.1 (uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_038884424.1 uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida])

HSP 1 Score: 322.8 bits (826), Expect = 1.6e-84
Identity = 148/155 (95.48%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCG+PRADF GGSYG GRV GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFVGGSYGSGRVLGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNFASRSICFKCGA+KDETSAAAYDGDL RMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGASKDETSAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WIC RSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICNRSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155

[Close]

BLAST of Pay0005389 vs. NCBI nr
Match: XP_023002539.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima])

HSP 1 Score: 320.9 bits (821), Expect = 6.2e-84
Identity = 147/155 (94.84%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGGG YGGGR GGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGGGYGGGR-GGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCGA+KDE SAAAYDGDL R+RGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

[Close]

BLAST of Pay0005389 vs. NCBI nr
Match: XP_023538151.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.9 bits (816), Expect = 2.4e-83
Identity = 146/155 (94.19%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG +YGGGR GGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAAYGGGR-GGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNFASRSICFKCGA+KDE SAAAYDGDL R+RGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

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BLAST of Pay0005389 vs. NCBI nr
Match: KAG6585459.1 (Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 318.5 bits (815), Expect = 3.1e-83
Identity = 146/155 (94.19%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1    MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
            MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG  YGGGR GGSSSFGFTTGPDVRPG
Sbjct: 971  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGR-GGSSSFGFTTGPDVRPG 1030

Query: 61   DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
            DWYC VANCGAHNFASRSICFKCGA+KDE SAAAYDGDL R+RGFNFGGASNRPGWKSGD
Sbjct: 1031 DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 1090

Query: 121  WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
            WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 1091 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 1124

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BLAST of Pay0005389 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 214.9 bits (546), Expect = 4.5e-56
Identity = 108/167 (64.67%), Postives = 118/167 (70.66%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG-GSYGGGRVGG--SSSFGFTTGPDV 60
           MSRPGDWNCRSC+HLNFQRRDSCQRCGD R+  GG G    G  GG   S+FGFTTG DV
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDV 60

Query: 61  RPGDWYCTVANCGAHNFASRSICFKCGATKDETSA----------AAYDGDLPRMRGFNF 120
           RPGDWYCTV NCG HNFASRS CFKCG  KDET A          A +D D+ R R    
Sbjct: 61  RPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGN 120

Query: 121 GGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPY 155
           GG   R  WKSGDWIC R  CNEHNFASR ECFRCNAPRD ++++ +
Sbjct: 121 GG---RSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSNRTSF 164

[Close]

BLAST of Pay0005389 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.6e-53
Identity = 107/174 (61.49%), Postives = 122/174 (70.11%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG------GSYGGGRVGGSSSFGFTTG 60
           M+RPGDWNCR C+HLNFQRRDSCQRC +PR   GG        +GG  V  SSSFGF TG
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRP--GGISTDLLSGFGGRPV--SSSFGFNTG 60

Query: 61  PDVRPGDWYCTVANCGAHNFASRSICFKCGATKDE---TSAAAYDGDL-----PRMRGFN 120
           PDVRPGDWYC + +CG HNFA+RS CFKCGA KDE   +SAAA  G +     PR   F 
Sbjct: 61  PDVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFG 120

Query: 121 FGGASN------RPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPY 155
           FGG+S+      R  WKSGDWIC RS CNEHNFASR ECFRCNAP++  ++ PY
Sbjct: 121 FGGSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKELATEPPY 170

[Close]

BLAST of Pay0005389 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 3.8e-31
Identity = 63/143 (44.06%), Postives = 84/143 (58.74%), Query Frame = 0


Query: 5   GDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPGDWYC 64
           GDW C +C H NF++R+SCQ+CG P+       +GG  V    S       +V  GDWYC
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK-------FGGVDV----STYLYNRTEVMAGDWYC 65

Query: 65  TVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGDWICA 124
              NCG+HN+ASR+ C++CG  K E +   Y     +M  +   GA+  PGWK+GDW+C 
Sbjct: 66  GALNCGSHNYASRTSCYRCGMIKVEYTEQYYGA---QMVAYGNDGAACPPGWKTGDWVCP 125

Query: 125 RSDCNEHNFASRRECFRCNAPRD 148
           R  C  HN+ASR ECF+C   RD
Sbjct: 126 RVGCGVHNYASRAECFKCKTTRD 134

[Close]

BLAST of Pay0005389 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-11
Identity = 59/216 (27.31%), Postives = 81/216 (37.50%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGD------------PRAD-------FGGGSYGGG 60
           + R GDW C  C + N+  R+ C++CG             P A        F  G     
Sbjct: 46  LPRIGDWICTGCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHD 105

Query: 61  RVGGSSSFGFTTG-----PDVRPGDWYCTVANCGAHNFASRSICFKC--------GATKD 120
           + G   +F   T       + R GDW C    CG HN++SR  C KC        G  + 
Sbjct: 106 QPGSLLAFSNATNQASVHKEWRSGDWIC---RCGFHNYSSRIQCKKCNEIAPLALGTKRL 165

Query: 121 ETSAAAYDGDLPRMR-----------------GFNFGGASN------------RPG---- 148
            + A A++ D  R+                  G + G  SN             P     
Sbjct: 166 ASEALAHEWDSKRLNQGYTSMQTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGM 225

[Close]

BLAST of Pay0005389 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-06
Identity = 27/94 (28.72%), Postives = 37/94 (39.36%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPGDW 62
           + GDW C++CN LNF +   C RC D                        T   + PG+W
Sbjct: 279 KKGDWICQTCNFLNFSKNTRCLRCKDK----------------------PTLRQINPGEW 338

Query: 63  YCTVANCGAHNFASRSICFKCGATKDETSAAAYD 97
            C   +C   NF   SIC KC   + + +    D
Sbjct: 339 EC--ESCNYINFRRNSICLKCDHKRQKAANVTPD 348

The following BLAST results are available for this feature:

BLAST of Pay0005389 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	6.0e-13	29.30	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q27294	1.6e-05	45.61	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
P56959	5.1e-04	33.33	RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1	[more]

BLAST of Pay0005389 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLW7	2.8e-90	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380050 PE=4 SV=1	[more]
A0A1S3BBL4	2.8e-90	100.00	uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1KQR0	3.0e-84	94.84	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1GJE4	1.3e-82	93.55	TATA-binding protein-associated factor 2N-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1BUS6	5.3e-81	89.03	uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=367...	[more]

BLAST of Pay0005389 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138734.1	5.8e-90	100.00	uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus] >XP_008445181.1 ...	[more]
XP_038884423.1	1.6e-84	95.48	uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_03888...	[more]
XP_023002539.1	6.2e-84	94.84	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima]	[more]
XP_023538151.1	2.4e-83	94.19	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo]	[more]
KAG6585459.1	3.1e-83	94.19	Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Pay0005389 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	4.5e-56	64.67	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	1.6e-53	61.49	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	3.8e-31	44.06	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	1.2e-11	27.31	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	2.5e-06	28.72	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 5..29 e-value: 7.3E-6 score: 35.5 coord: 60..86 e-value: 8.5E-7 score: 38.6 coord: 119..145 e-value: 1.6E-5 score: 34.3
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 3..29 e-value: 6.6E-4 score: 18.9 coord: 117..146 e-value: 6.8E-9 score: 34.9 coord: 58..87 e-value: 6.3E-6 score: 25.4
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 121..142
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 62..83
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 58..89 score: 9.969523
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 117..148 score: 10.579303
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 9.969523
None	No IPR available	GENE3D	4.10.1060.10		coord: 2..32 e-value: 2.3E-10 score: 41.6 coord: 53..90 e-value: 2.4E-13 score: 51.1 coord: 110..149 e-value: 1.4E-11 score: 45.5
None	No IPR available	PANTHER	PTHR23111:SF26	RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN	coord: 1..153
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..153
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..31
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 111..149
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 54..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0005389.1	Pay0005389.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding