Pay0005247 (gene) Melon (Payzawat) v1

Overview


Name	Pay0005247
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Photosystem II reaction center Psb28 protein
Location	chr11: 31806603 .. 31807154 (+)
RNA-Seq Expression	Pay0005247
Synteny	Pay0005247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCTTCTTCTCCTCATCTCCTTCATCCTTCTTCCACCAAACTTAGACTCTCTTATTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACTACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTCCATGGAACCCCATCCTCATGGTTCAGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAGTGCCGGATGTGCGGCTCACGAAGTCCCGAGACGGAACCAACGGAATGGCGATTTTTAGGTTCGATCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGATTCTACATGATTGATGAAGAAGGGGTGATTCAATCGGTTGATGTGAATGCGAAGTTCATCAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGCTTGCAATTTGTCAAGAAATGA

mRNA sequence

ATGGTGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCTTCTTCTCCTCATCTCCTTCATCCTTCTTCCACCAAACTTAGACTCTCTTATTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACTACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTCCATGGAACCCCATCCTCATGGTTCAGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAGTGCCGGATGTGCGGCTCACGAAGTCCCGAGACGGAACCAACGGAATGGCGATTTTTAGGTTCGATCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGATTCTACATGATTGATGAAGAAGGGGTGATTCAATCGGTTGATGTGAATGCGAAGTTCATCAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGCTTGCAATTTGTCAAGAAATGA

Coding sequence (CDS)

ATGGTGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCTTCTTCTCCTCATCTCCTTCATCCTTCTTCCACCAAACTTAGACTCTCTTATTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACTACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTCCATGGAACCCCATCCTCATGGTTCAGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAGTGCCGGATGTGCGGCTCACGAAGTCCCGAGACGGAACCAACGGAATGGCGATTTTTAGGTTCGATCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGATTCTACATGATTGATGAAGAAGGGGTGATTCAATCGGTTGATGTGAATGCGAAGTTCATCAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGCTTGCAATTTGTCAAGAAATGA

Protein sequence

MVSLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTYRQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK

Homology

[Close]

BLAST of Pay0005247 vs. ExPASy Swiss-Prot
Match: Q0JG75 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSB28 PE=2 SV=2)

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-55
Identity = 121/180 (67.22%), Postives = 139/180 (77.22%), Query Frame = 0


Query: 6   SLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTYRQRPW 65
           ++AS  S  +     P+ +    S SLH    SSF G SL    TK  +L    +R RP 
Sbjct: 9   AVASPISARAQPRRCPAGSSGGPSQSLH----SSFGGVSLQCRRTKPASL----HRSRPS 68

Query: 66  NPILMV--QPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGDITG 125
             ++M+  +P IQFIQGTDEQT+PDVRLTKSRDGTNG+AIF FDQPSVFDSSAE+GDITG
Sbjct: 69  MQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITG 128

Query: 126 FYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 184
           FYMID+EGV+QSVDV+AKF+NGKPA IEAKYVMRTPREWDRFMRFMERYS ANGLQFVKK
Sbjct: 129 FYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 180

[Close]

BLAST of Pay0005247 vs. ExPASy Swiss-Prot
Match: Q8W0Y8 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.5e-51
Identity = 109/186 (58.60%), Postives = 135/186 (72.58%), Query Frame = 0


Query: 1   MVSLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           M  ++S+ S TS +      P S  +  S S+     SSF G  +SL   +  + T    
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRT---- 60

Query: 61  RQRPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
             RP  P+   +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS E
Sbjct: 61  ALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NG
Sbjct: 121 VGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNG 180

Query: 181 LQFVKK 184
           LQFVKK
Sbjct: 181 LQFVKK 182

[Close]

BLAST of Pay0005247 vs. ExPASy Swiss-Prot
Match: P49508 (Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=psb28 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.0e-35
Identity = 67/113 (59.29%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 71  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFD-SSAEVGDITGFYMIDE 130
           ++ KIQFI+G DE+ +PDVRLT+SRDG+ G A FRF  P++ D S+A+ G+ITG Y+ID+
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60

Query: 131 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 183
           EG +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 61  EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]

BLAST of Pay0005247 vs. ExPASy Swiss-Prot
Match: A0T0H5 (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) OX=556484 GN=psb28 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-34
Identity = 65/113 (57.52%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 71  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFD-SSAEVGDITGFYMIDE 130
           ++ KIQFI+G DE+ +PDVRLT+S+DG+ G A FRF  P++ D ++A+ G+ITG Y+IDE
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60

Query: 131 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 183
           EG++++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 61  EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

[Close]

BLAST of Pay0005247 vs. ExPASy Swiss-Prot
Match: O78418 (Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb28 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.6e-34
Identity = 67/109 (61.47%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 75  IQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEV-GDITGFYMIDEEGVI 134
           IQFIQG +E  +PDVRLT+SRDG+ G A FRF  P V ++ + V G+ITG Y+IDEEG +
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 135 QSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 183
            + DVNA+F+NGKP GIEA Y+M++  +WDRFMRFMERYS  NGL F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

[Close]

BLAST of Pay0005247 vs. ExPASy TrEMBL
Match: A0A5A7TA18 (Photosystem II reaction center Psb28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001560 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MVSLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           M SLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120
           RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD
Sbjct: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120

Query: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180
           ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF
Sbjct: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180

Query: 181 VKK 184
           VKK
Sbjct: 181 VKK 183

[Close]

BLAST of Pay0005247 vs. ExPASy TrEMBL
Match: A0A1S3CCN2 (Photosystem II reaction center Psb28 protein OS=Cucumis melo OX=3656 GN=LOC103498926 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MVSLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           M SLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120
           RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD
Sbjct: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120

Query: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180
           ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF
Sbjct: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180

Query: 181 VKK 184
           VKK
Sbjct: 181 VKK 183

[Close]

BLAST of Pay0005247 vs. ExPASy TrEMBL
Match: A0A0A0K9C2 (Photosystem II reaction center Psb28 protein OS=Cucumis sativus OX=3659 GN=Csa_6G087980 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.6e-92
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MVSLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           M SLQSLASTTSPSSPHLLHPSSTK +LSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 194 MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 253

Query: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120
           RQR WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAEVGD
Sbjct: 254 RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 313

Query: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180
           ITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QF
Sbjct: 314 ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 373

Query: 181 VKK 184
           VKK
Sbjct: 374 VKK 376

[Close]

BLAST of Pay0005247 vs. ExPASy TrEMBL
Match: A0A6J1KY50 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111498173 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.4e-74
Identity = 154/187 (82.35%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 1   MVSLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           M +LQSLAST     PHL HPSSTK+  S +LH SAFS+F+GRSLS+S  KC TL RR  
Sbjct: 40  MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRC 99

Query: 61  RQ--RPWNPI--LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
               RP NPI  +MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+FD+PSVFDSSA
Sbjct: 100 EAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 159

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 160 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 219

Query: 181 GLQFVKK 184
           GLQFVKK
Sbjct: 220 GLQFVKK 221

[Close]

BLAST of Pay0005247 vs. ExPASy TrEMBL
Match: A0A6J1GP93 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111455888 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 9.7e-74
Identity = 155/187 (82.89%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 1   MVSLQSLASTTSPSSPHLLHPSS--TKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRR 60
           M +LQSLAS TS SSPHL HPSS  TK   S  LHSS FS+FHGRSL++S  KC T+TRR
Sbjct: 44  MATLQSLAS-TSLSSPHLHHPSSTNTKACASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103

Query: 61  TYRQ--RPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
             +   RP N ILMV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F+QPSVFDSS 
Sbjct: 104 RCQPYGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 184
           GLQFVKK
Sbjct: 224 GLQFVKK 229

[Close]

BLAST of Pay0005247 vs. NCBI nr
Match: XP_008459971.1 (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo] >KAA0039893.1 photosystem II reaction center PSB28 protein [Cucumis melo var. makuwa] >TYK24609.1 photosystem II reaction center PSB28 protein [Cucumis melo var. makuwa])

HSP 1 Score: 362.1 bits (928), Expect = 2.9e-96
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MVSLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           M SLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120
           RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD
Sbjct: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120

Query: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180
           ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF
Sbjct: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180

Query: 181 VKK 184
           VKK
Sbjct: 181 VKK 183

[Close]

BLAST of Pay0005247 vs. NCBI nr
Match: XP_011656766.1 (photosystem II reaction center PSB28 protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 3.3e-92
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MVSLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           M SLQSLASTTSPSSPHLLHPSSTK +LSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 44  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 103

Query: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120
           RQR WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAEVGD
Sbjct: 104 RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 163

Query: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180
           ITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QF
Sbjct: 164 ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 223

Query: 181 VKK 184
           VKK
Sbjct: 224 VKK 226

[Close]

BLAST of Pay0005247 vs. NCBI nr
Match: XP_038875127.1 (photosystem II reaction center Psb28 protein [Benincasa hispida])

HSP 1 Score: 295.8 bits (756), Expect = 2.5e-76
Identity = 158/184 (85.87%), Postives = 163/184 (88.59%), Query Frame = 0


Query: 1   MVSLQSLASTTSPSSPHL-LHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRT 60
           M +LQSL S TS +SPH+  H  STK+  S +LH SAFSSFHGRSLSLS   C TLT R 
Sbjct: 1   MAALQSLVS-TSHASPHMHHHHPSTKVFPSATLHRSAFSSFHGRSLSLSAGNCQTLTHR- 60

Query: 61  YRQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG 120
              RPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG
Sbjct: 61  -NGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG 120

Query: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180
           DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ
Sbjct: 121 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 180

Query: 181 FVKK 184
           FVKK
Sbjct: 181 FVKK 181

[Close]

BLAST of Pay0005247 vs. NCBI nr
Match: XP_023514182.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.7 bits (735), Expect = 6.9e-74
Identity = 153/187 (81.82%), Postives = 164/187 (87.70%), Query Frame = 0


Query: 1   MVSLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           M +LQSLAST     PHL HPSSTK+  S +LH SAFS+F+GRSLS+S  KC TL RR +
Sbjct: 1   MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRF 60

Query: 61  RQ--RPWNPI--LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
               RP NPI  +MV+PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+FD+PSVFDSSA
Sbjct: 61  EAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180

Query: 181 GLQFVKK 184
           GLQFVKK
Sbjct: 181 GLQFVKK 182

[Close]

BLAST of Pay0005247 vs. NCBI nr
Match: XP_023005079.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 287.3 bits (734), Expect = 9.0e-74
Identity = 154/187 (82.35%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 1   MVSLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           M +LQSLAST     PHL HPSSTK+  S +LH SAFS+F+GRSLS+S  KC TL RR  
Sbjct: 40  MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRC 99

Query: 61  RQ--RPWNPI--LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
               RP NPI  +MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+FD+PSVFDSSA
Sbjct: 100 EAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 159

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 160 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 219

Query: 181 GLQFVKK 184
           GLQFVKK
Sbjct: 220 GLQFVKK 221

[Close]

BLAST of Pay0005247 vs. TAIR 10
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 202.6 bits (514), Expect = 2.7e-52
Identity = 100/149 (67.11%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 38  SSFHGRSLSLSTTKCHTLTRRTYRQRPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKS 97
           SSF G  +SL   +  + T      RP  P+   +MV+P +QFIQGTDE T+PDV+LT+S
Sbjct: 53  SSFTGSPVSLPRAQPSSRT----ALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRS 112

Query: 98  RDGTNGMAIFRFDQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKY 157
           RDG+NGMA+F FDQPSVFDSS EVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK+
Sbjct: 113 RDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKH 172

Query: 158 VMRTPREWDRFMRFMERYSNANGLQFVKK 184
           +MR+P+EWDRFMRFMERYS+ NGLQFVKK
Sbjct: 173 IMRSPKEWDRFMRFMERYSDQNGLQFVKK 197

[Close]

BLAST of Pay0005247 vs. TAIR 10
Match: AT4G28660.1 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 201.8 bits (512), Expect = 4.6e-52
Identity = 109/186 (58.60%), Postives = 135/186 (72.58%), Query Frame = 0


Query: 1   MVSLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           M  ++S+ S TS +      P S  +  S S+     SSF G  +SL   +  + T    
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRT---- 60

Query: 61  RQRPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
             RP  P+   +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS E
Sbjct: 61  ALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NG
Sbjct: 121 VGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNG 180

Query: 181 LQFVKK 184
           LQFVKK
Sbjct: 181 LQFVKK 182

The following BLAST results are available for this feature:

BLAST of Pay0005247 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JG75	2.6e-55	67.22	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
Q8W0Y8	6.5e-51	58.60	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
P49508	5.0e-35	59.29	Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=...	[more]
A0T0H5	1.1e-34	57.52	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]
O78418	5.6e-34	61.47	Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb...	[more]

BLAST of Pay0005247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TA18	1.4e-96	99.45	Photosystem II reaction center Psb28 protein OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CCN2	1.4e-96	99.45	Photosystem II reaction center Psb28 protein OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0K9C2	1.6e-92	95.08	Photosystem II reaction center Psb28 protein OS=Cucumis sativus OX=3659 GN=Csa_6...	[more]
A0A6J1KY50	4.4e-74	82.35	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GP93	9.7e-74	82.89	Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Pay0005247 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459971.1	2.9e-96	99.45	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis ...	[more]
XP_011656766.1	3.3e-92	95.08	photosystem II reaction center PSB28 protein, chloroplastic [Cucumis sativus]	[more]
XP_038875127.1	2.5e-76	85.87	photosystem II reaction center Psb28 protein [Benincasa hispida]	[more]
XP_023514182.1	6.9e-74	81.82	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo...	[more]
XP_023005079.1	9.0e-74	82.35	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxi...	[more]

BLAST of Pay0005247 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28660.2	2.7e-52	67.11	photosystem II reaction center PSB28 protein	[more]
AT4G28660.1	4.6e-52	58.60	photosystem II reaction center PSB28 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 75..180 e-value: 5.4E-43 score: 145.5
IPR005610	Photosystem II Psb28, class 1	TIGRFAM	TIGR03047	TIGR03047	coord: 75..181 e-value: 2.5E-45 score: 151.2
IPR005610	Photosystem II Psb28, class 1	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 3..183
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 72..181 score: 30.461342
IPR038676	Photosystem II Psb28, class 1 superfamily	GENE3D	2.40.30.220	Photosystem II Psb28	coord: 73..183 e-value: 1.7E-45 score: 155.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0005247.1	Pay0005247.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II