Pay0005153 (gene) Melon (Payzawat) v1

Overview
NamePay0005153
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionarabinogalactan peptide 13-like
Locationchr02: 3053176 .. 3053666 (+)
RNA-Seq ExpressionPay0005153
SyntenyPay0005153
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCATTTTCAAAAAAAAGAAAAGAAAAGAAAAACAAAGAGAAACCCATTTGAAAAAAAGAAAAAAAAAAGTCCTCAACTTTCAAGGATTTTTTCATCAAAATGGAAGCAGCAAACAAGTTTCTAATGATAACAATGATGGTGGTTGTTGTAATGGTCATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACGTTAATGGCTTCTTTTGTTCCTCTTCTTTTTGGATTGTTTTTCATCTAATAATTTTCTTCCCCTTTCCTCTTTTTTCTTTTCTTTCAATTTACCTATGAATATATATATATATATATAAATGTGTGTGTGTGTGTGTGTGTTTTTCTTTATTTAGGGGATGATGATTGAATTTGTTTGGGTGTGAGATTTGGGATTATTATTGATTTTATGTATATCTTTCCATATTAATTTAATGTTATGTTGTTATTCT

mRNA sequence

ACCATTTTCAAAAAAAAGAAAAGAAAAGAAAAACAAAGAGAAACCCATTTGAAAAAAAGAAAAAAAAAAGTCCTCAACTTTCAAGGATTTTTTCATCAAAATGGAAGCAGCAAACAAGTTTCTAATGATAACAATGATGGTGGTTGTTGTAATGGTCATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACGTTAATGGCTTCTTTTGTTCCTCTTCTTTTTGGATTGTTTTTCATCTAATAATTTTCTTCCCCTTTCCTCTTTTTTCTTTTCTTTCAATTTACCTATGAATATATATATATATATATAAATGTGTGTGTGTGTGTGTGTGTTTTTCTTTATTTAGGGGATGATGATTGAATTTGTTTGGGTGTGAGATTTGGGATTATTATTGATTTTATGTATATCTTTCCATATTAATTTAATGTTATGTTGTTATTCT

Coding sequence (CDS)

ATGGAAGCAGCAAACAAGTTTCTAATGATAACAATGATGGTGGTTGTTGTAATGGTCATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACGTTAATGGCTTCTTTTGTTCCTCTTCTTTTTGGATTGTTTTTCATCTAA

Protein sequence

MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFFI
Homology
BLAST of Pay0005153 vs. ExPASy TrEMBL
Match: A0A0A0LWU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1  MEAANK---FLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLF 60
          MEAA K    LM+TMMVVV++ ISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL+F
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60

Query: 61 GLFFI 63
          G FFI
Sbjct: 61 GFFFI 65

BLAST of Pay0005153 vs. ExPASy TrEMBL
Match: A0A6J1JCI6 (arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 12 MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 61
          M+ +VV  ++ SS IVAAQEAPAPSPASDA LS+PTLMAS  PL  G F
Sbjct: 10 MLAMVVGAMALSSTIVAAQEAPAPSPASDAPLSLPTLMASLAPLALGFF 58

BLAST of Pay0005153 vs. NCBI nr
Match: XP_011660059.1 (arabinogalactan protein 13 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 3.0e-13
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1  MEAANK---FLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLF 60
          MEAA K    LM+TMMVVV++ ISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL+F
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60

Query: 61 GLFFI 63
          G FFI
Sbjct: 61 GFFFI 65

BLAST of Pay0005153 vs. NCBI nr
Match: KAE8653471.1 (hypothetical protein Csa_007150 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1  MEAANK---FLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 56
          MEAA K    LM+TMMVVV++ ISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 58

BLAST of Pay0005153 vs. NCBI nr
Match: XP_038879727.1 (arabinogalactan protein 13-like [Benincasa hispida])

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 1  MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 60
          MEA     ++ M++VVV++  SSS+IVAAQEAPAPSPASDA +S+PTLMAS  PL+ G F
Sbjct: 1  MEAMKSQALMMMIMVVVLMAFSSSSIVAAQEAPAPSPASDAPISLPTLMASLAPLVLGFF 60

BLAST of Pay0005153 vs. NCBI nr
Match: KAG7023913.1 (Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 6.7e-05
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 12 MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 61
          M+ +VV  ++ SS IVAAQEAPAPSPASDASLS+PTLMAS  PL  G F
Sbjct: 10 MLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFF 58

BLAST of Pay0005153 vs. NCBI nr
Match: XP_022988237.1 (arabinogalactan peptide 13-like [Cucurbita maxima])

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 12 MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 61
          M+ +VV  ++ SS IVAAQEAPAPSPASDA LS+PTLMAS  PL  G F
Sbjct: 10 MLAMVVGAMALSSTIVAAQEAPAPSPASDAPLSLPTLMASLAPLALGFF 58

BLAST of Pay0005153 vs. TAIR 10
Match: AT5G56540.1 (arabinogalactan protein 14 )

HSP 1 Score: 40.0 bits (92), Expect = 7.9e-04
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 4  ANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFF 62
          A K  +  +++V V+  S+    VAA +APAPSP SDAS  IPT  AS   + FG FF
Sbjct: 3  AMKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFFF 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LWU91.5e-1383.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=3 SV=1[more]
A0A6J1JCI61.2e-0467.35arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3... [more]
Match NameE-valueIdentityDescription
XP_011660059.13.0e-1383.08arabinogalactan protein 13 [Cucumis sativus][more]
KAE8653471.11.8e-1084.48hypothetical protein Csa_007150 [Cucumis sativus][more]
XP_038879727.12.1e-0661.67arabinogalactan protein 13-like [Benincasa hispida][more]
KAG7023913.16.7e-0569.39Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022988237.12.5e-0467.35arabinogalactan peptide 13-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT5G56540.17.9e-0446.55arabinogalactan protein 14 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039281Arabinogalactan protein 3/12/13/14/21PANTHERPTHR34114ARABINOGALACTAN PEPTIDE 1coord: 1..61
NoneNo IPR availablePANTHERPTHR34114:SF18ARABINOGALACTAN PEPTIDE 13-LIKEcoord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0005153.1Pay0005153.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0016021 integral component of membrane