Pay0003830 (gene) Melon (Payzawat) v1

Overview
NamePay0003830
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionLate endosome and vacuole interface protein
Locationchr08: 2541411 .. 2542853 (-)
RNA-Seq ExpressionPay0003830
SyntenyPay0003830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTGAAAGAGTGCACACAAGCCAAAGTTCAAAACAAAAGAACTAAAAAAGTGTTTTGACCTATTGATTTACTTTTATTCTGAACCACAAGGCTCAGTTTCTGTTAAGTGGGGTTTTGGACTAATACCCCACAGGGTTCCTGCAGCAGTATTTTTCTGTTAAATTCATAACGGAGAAAGGGTTTGAATTGTTATAATCCTTTTCTGTAAAAAATTGTACTTTGTTGTTTAAGAAGGTTCAAAAGGAAGTTTATTCCTTGCTTTTAAGGAACCGTAGAGATGGTTAAGGAGCTTAGTGGAACATAAATACTTTTATGCCCGTGAAAGAGGCGAAGACCGAAGACATACCGTTGCACATAGTCACCTTCCTTCGTTACTTTTGCCGCAACAATATTCGATATTGATATGTCTCTGTAGGCTCTCTGCCCACTGCAATTGCTATTAGCTCTCCCTCGCTTTCTCTCTCTCTCTCTCTCTCTCTCCCCTTTTCCTTCTCCTTCTCCTTCTCTGTCTTTATCGCTGTAGTTGATGGAATTTGAGCATTCCAACATGACTCCAAGGAGAAAAGGCCGATCTCATCGTAGAGGCTCAACATAAACTGCGCAGCTTCATTGGAAGGCCAAAAGATTACGCTTTGCCCTTTCTCATTTCGCCCTCCTCCTGTATACAAAAAGGTGAATCGTCTTTTGTTGTTTTGGTTCTGACACTCCTGCACAAACTTCAGATTGCAACTGTTCTTGTTTGTCTCTGCGTCTGTGAATCCTTTATAATCTTCCTCAAATACCCAGAAACTATCACAACCTGCTCTTCATTTCAGGACATTTTGGGATTAGCTGCAGAAATTTTAGAGTTTAGAGGTTGACGTTGTATTAATGGGATTTGTGGAAGGCATAGAATGGATGAATACTTACAGTAGGAAGCAATTCAAGAAACTGTTCTGGAGGATGAGAGCTGCAATGAAGAAAGCCATCAAGAACGGAAGCAAGCAGCAGTTCAGGTTTCAGTATGATCCTTGCAGCTACGCTCTAAATTTTGACGATGGATTATGCAAATTTGAAGCTGTCGCAAGTGAAACACATGCAAAGTTTCAAGCTAGTTCAAATTTGAATCACTCTGCTATGTGGGTTTTTGTACTTTTGGTGAAATCTGAGTGAATTTTCTTGATAGGCAGATTGACTCTTTGCCTGTTCATTTTCTTCTTCATTCTTGATTAGAAACCATCTAGTTCCATTTCTGTATATCTATGCTTGTGATATGATCTAGAATTATTAATTGATTTTGGTCTTGGTTTTGTTTTGAGAGAAACTGTTCCTAAGGTTTCCTTTGTCATCCTTGATCAATTCACTCCTTCATTTCAGGTTCTTTCATCTACCCATATGGCAATCTAAGTGTTTAGTATTTGTTAATTTATTTTCTAGACAACCCTACTTCCTGCGTGGACAAA

mRNA sequence

CCTTGAAAGAGTGCACACAAGCCAAAGTTCAAAACAAAAGAACTAAAAAAGTGTTTTGACCTATTGATTTACTTTTATTCTGAACCACAAGGCTCAGTTTCTGTTAAGTGGGGTTTTGGACTAATACCCCACAGGGTTCCTGCAGCAGTATTTTTCTGTTAAATTCATAACGGAGAAAGGGTTTGAATTGTTATAATCCTTTTCTGTAAAAAATTGTACTTTGTTGTTTAAGAAGGTTCAAAAGGAAGTTTATTCCTTGCTTTTAAGGAACCGTAGAGATGGTTAAGGAGCTTAGTGGAACATAAATACTTTTATGCCCGTGAAAGAGGCGAAGACCGAAGACATACCGTTGCACATAGTCACCTTCCTTCGTTACTTTTGCCGCAACAATATTCGATATTGATATGTCTCTGTAGGCTCTCTGCCCACTGCAATTGCTATTAGCTCTCCCTCGCTTTCTCTCTCTCTCTCTCTCTCTCTCCCCTTTTCCTTCTCCTTCTCCTTCTCTGTCTTTATCGCTGTAGTTGATGGAATTTGAGCATTCCAACATGACTCCAAGGAGAAAAGGCCGATCTCATCGTAGAGGCTCAACATAAACTGCGCAGCTTCATTGGAAGGCCAAAAGATTACGCTTTGCCCTTTCTCATTTCGCCCTCCTCCTGTATACAAAAAGGACATTTTGGGATTAGCTGCAGAAATTTTAGAGTTTAGAGGTTGACGTTGTATTAATGGGATTTGTGGAAGGCATAGAATGGATGAATACTTACAGTAGGAAGCAATTCAAGAAACTGTTCTGGAGGATGAGAGCTGCAATGAAGAAAGCCATCAAGAACGGAAGCAAGCAGCAGTTCAGGTTTCAGTATGATCCTTGCAGCTACGCTCTAAATTTTGACGATGGATTATGCAAATTTGAAGCTGTCGCAAGTGAAACACATGCAAAGTTTCAAGCTAGTTCAAATTTGAATCACTCTGCTATGTGGGTTTTTGTACTTTTGGTGAAATCTGAGTGAATTTTCTTGATAGGCAGATTGACTCTTTGCCTGTTCATTTTCTTCTTCATTCTTGATTAGAAACCATCTAGTTCCATTTCTGTATATCTATGCTTGTGATATGATCTAGAATTATTAATTGATTTTGGTCTTGGTTTTGTTTTGAGAGAAACTGTTCCTAAGGTTTCCTTTGTCATCCTTGATCAATTCACTCCTTCATTTCAGGTTCTTTCATCTACCCATATGGCAATCTAAGTGTTTAGTATTTGTTAATTTATTTTCTAGACAACCCTACTTCCTGCGTGGACAAA

Coding sequence (CDS)

ATGGGATTTGTGGAAGGCATAGAATGGATGAATACTTACAGTAGGAAGCAATTCAAGAAACTGTTCTGGAGGATGAGAGCTGCAATGAAGAAAGCCATCAAGAACGGAAGCAAGCAGCAGTTCAGGTTTCAGTATGATCCTTGCAGCTACGCTCTAAATTTTGACGATGGATTATGCAAATTTGAAGCTGTCGCAAGTGAAACACATGCAAAGTTTCAAGCTAGTTCAAATTTGAATCACTCTGCTATGTGGGTTTTTGTACTTTTGGTGAAATCTGAGTGA

Protein sequence

MGFVEGIEWMNTYSRKQFKKLFWRMRAAMKKAIKNGSKQQFRFQYDPCSYALNFDDGLCKFEAVASETHAKFQASSNLNHSAMWVFVLLVKSE
Homology
BLAST of Pay0003830 vs. ExPASy TrEMBL
Match: A0A5C7GSN3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_026626 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.3e-21
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 0

Query: 1   MGFVEGIEWMNTYSRKQFKKLFWRMRAAMKKAIKNGSKQQFRFQYDPCSYALNFDD---- 60
           MGFVE  EW+N+Y ++Q K LFWR+RAA+KKA+KNGSK QF+FQYDP SYALNFDD    
Sbjct: 1   MGFVESFEWVNSYGKRQCKSLFWRVRAALKKAMKNGSKNQFKFQYDPLSYALNFDDGGGG 60

Query: 61  -GLCK--FEAVASETHAKFQ-ASSNLNHSAMWVFVLLVKSE 94
            G CK   ++ +     KFQ  +S  N+  MWV+V+LV+ E
Sbjct: 61  GGGCKMGLDSNSGRHDNKFQDCASETNNIMMWVYVVLVEKE 101

BLAST of Pay0003830 vs. ExPASy TrEMBL
Match: A0A2C9U8B6 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G023500 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 0

Query: 1  MGFVEGIEWMNTYSRKQFKKLFWRMRAAMKKAIKNGSKQQFRFQYDPCSYALNFDDGLCK 60
          MG +   EWMN++S+KQ K LFWR++AA+KKA+KNG KQQ  FQYDP SYALNFDDG C 
Sbjct: 1  MGLMGRFEWMNSFSKKQCKSLFWRVKAAVKKAVKNGGKQQVNFQYDPSSYALNFDDGCCH 60

Query: 61 FEAVASETHAKFQASSNLNHSAMWVFVLLVKS 93
          F     E   +     N     +WV+VL V+S
Sbjct: 61 FGREKYEVRPRKSEDGN---KTIWVYVLWVES 89

BLAST of Pay0003830 vs. ExPASy TrEMBL
Match: A0A2C9U5L8 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G041400 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.9e-18
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 0

Query: 1  MGFVEGIEWMNTYSRKQFKKLFWRMRAAMKKAIKNGSKQQFRFQYDPCSYALNFDDGLCK 60
          MG +  +EWMN++S+KQ K LFWR++AA+KKA+KNG KQQ  FQYDP SYALNFDDG C 
Sbjct: 1  MGLIGRLEWMNSFSKKQCKSLFWRVKAAVKKAVKNGGKQQVNFQYDPSSYALNFDDGCCH 60

Query: 61 FEAVASETHAKFQASSNLNHSAMWVFVLLVKS 93
          F   + E  +     S   +  +W++V+ V+S
Sbjct: 61 FGRGSYEVKS---GKSQDGNETVWLYVVWVES 89

BLAST of Pay0003830 vs. ExPASy TrEMBL
Match: A0A251PFG8 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G040400 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.6e-18
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 0

Query: 1   MGFVEGIEWMNTYSRKQFKKLFWRMRAAMKKAIKNGSKQQFRFQYDPCSYALNFDDGLCK 60
           MG V  + W+N YSRKQ + LFWRMRAA+KKA+KN  KQQ RFQYDP SYALNFDDG  K
Sbjct: 3   MGLVGSLVWVNAYSRKQCRSLFWRMRAALKKALKNSGKQQLRFQYDPSSYALNFDDGSWK 62

Query: 61  FEAVAS------ETHAKFQASSNLNHSAMWVFVLLVKSE 94
               A+       T  +  + S++ ++A WV+VL V SE
Sbjct: 63  SAQEANALKLKHATKPQAHSDSDVKNTA-WVYVLWVVSE 100

BLAST of Pay0003830 vs. ExPASy TrEMBL
Match: M5WKE2 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa015232mg PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.6e-18
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 0

Query: 1  MGFVEGIEWMNTYSRKQFKKLFWRMRAAMKKAIKNGSKQQFRFQYDPCSYALNFDDGLCK 60
          MG V  + W+N YSRKQ + LFWRMRAA+KKA+KN  KQQ RFQYDP SYALNFDDG  K
Sbjct: 1  MGLVGSLVWVNAYSRKQCRSLFWRMRAALKKALKNSGKQQLRFQYDPSSYALNFDDGSWK 60

Query: 61 FEAVAS------ETHAKFQASSNLNHSAMWVFVLLVKSE 94
              A+       T  +  + S++ ++A WV+VL V SE
Sbjct: 61 SAQEANALKLKHATKPQAHSDSDVKNTA-WVYVLWVVSE 98

BLAST of Pay0003830 vs. NCBI nr
Match: KAG6594620.1 (hypothetical protein SDJN03_11173, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-29
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 0

Query: 15  RKQFKKLFWRMRAAMKKAIKNGSKQQFRFQYDPCSYALNFDDGLCKFEAVASETHAKFQA 74
           RKQF+KLFWRMRAAMKKAIKNG K++F FQYDPCSYALNFDDG CKFEAVA E  AK Q 
Sbjct: 89  RKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCKFEAVAPEEPAKIQI 148

Query: 75  SSNLNHSAMWVFVLLVKSE 94
           SSNLNHS MWVFVLLVKSE
Sbjct: 149 SSNLNHSPMWVFVLLVKSE 167

BLAST of Pay0003830 vs. NCBI nr
Match: KAF3451534.1 (hypothetical protein FNV43_RR07629 [Rhamnella rubrinervis])

HSP 1 Score: 114.4 bits (285), Expect = 5.3e-22
Identity = 57/95 (60.00%), Postives = 71/95 (74.74%), Query Frame = 0

Query: 1  MGFVEGIEWMNTYSRKQFKKLFWRMRAAMKKAIKNGSKQQFRFQYDPCSYALNFDDGLCK 60
          MG +  + W+NTYSRK  + LFWR+RAA+KKA+KNG KQQ RFQYDPCSYALNFDDG CK
Sbjct: 5  MGLIASLVWVNTYSRKHCRSLFWRVRAALKKAVKNGGKQQIRFQYDPCSYALNFDDGGCK 64

Query: 61 F-EAVASET-HAKFQASSNLNHSAMWVFVLLVKSE 94
            EA  + + HAK Q  S+  +S  WV+VL VK++
Sbjct: 65 LGEAQTTPSQHAKHQCHSDTKNS-KWVYVLWVKAD 98

BLAST of Pay0003830 vs. NCBI nr
Match: TXG47332.1 (hypothetical protein EZV62_026626 [Acer yangbiense])

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-20
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 0

Query: 1   MGFVEGIEWMNTYSRKQFKKLFWRMRAAMKKAIKNGSKQQFRFQYDPCSYALNFDD---- 60
           MGFVE  EW+N+Y ++Q K LFWR+RAA+KKA+KNGSK QF+FQYDP SYALNFDD    
Sbjct: 1   MGFVESFEWVNSYGKRQCKSLFWRVRAALKKAMKNGSKNQFKFQYDPLSYALNFDDGGGG 60

Query: 61  -GLCK--FEAVASETHAKFQ-ASSNLNHSAMWVFVLLVKSE 94
            G CK   ++ +     KFQ  +S  N+  MWV+V+LV+ E
Sbjct: 61  GGGCKMGLDSNSGRHDNKFQDCASETNNIMMWVYVVLVEKE 101

BLAST of Pay0003830 vs. NCBI nr
Match: OAY26128.1 (hypothetical protein MANES_16G023500v8 [Manihot esculenta])

HSP 1 Score: 102.1 bits (253), Expect = 2.7e-18
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 0

Query: 1  MGFVEGIEWMNTYSRKQFKKLFWRMRAAMKKAIKNGSKQQFRFQYDPCSYALNFDDGLCK 60
          MG +   EWMN++S+KQ K LFWR++AA+KKA+KNG KQQ  FQYDP SYALNFDDG C 
Sbjct: 1  MGLMGRFEWMNSFSKKQCKSLFWRVKAAVKKAVKNGGKQQVNFQYDPSSYALNFDDGCCH 60

Query: 61 FEAVASETHAKFQASSNLNHSAMWVFVLLVKS 93
          F     E   +     N     +WV+VL V+S
Sbjct: 61 FGREKYEVRPRKSEDGN---KTIWVYVLWVES 89

BLAST of Pay0003830 vs. NCBI nr
Match: OAY24759.1 (hypothetical protein MANES_17G041400v8 [Manihot esculenta])

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-18
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 0

Query: 1  MGFVEGIEWMNTYSRKQFKKLFWRMRAAMKKAIKNGSKQQFRFQYDPCSYALNFDDGLCK 60
          MG +  +EWMN++S+KQ K LFWR++AA+KKA+KNG KQQ  FQYDP SYALNFDDG C 
Sbjct: 1  MGLIGRLEWMNSFSKKQCKSLFWRVKAAVKKAVKNGGKQQVNFQYDPSSYALNFDDGCCH 60

Query: 61 FEAVASETHAKFQASSNLNHSAMWVFVLLVKS 93
          F   + E  +     S   +  +W++V+ V+S
Sbjct: 61 FGRGSYEVKS---GKSQDGNETVWLYVVWVES 89

BLAST of Pay0003830 vs. TAIR 10
Match: AT1G11112.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 6.7e-07
Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = 0

Query: 19 KKLFWRMRAAMKKAIKNGSKQQFRFQYDPCSYALNFDDGLCKFEAVASETHAKFQASSNL 78
          KK+F RM+AA+KK  K   K+Q  FQYDP SYALNFDDG+        E   +F    N 
Sbjct: 15 KKMFRRMKAAVKKTKK---KKQTMFQYDPWSYALNFDDGV--------ENPQRFSGDCNC 74

Query: 79 N-HSAMWVFVLLVK 92
            H    ++V+ VK
Sbjct: 75 KLHRITLIYVVSVK 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5C7GSN38.3e-2155.45Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_026626 PE=4 SV=1[more]
A0A2C9U8B61.3e-1853.26Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G023500 PE=4 SV=... [more]
A0A2C9U5L82.9e-1851.09Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G041400 PE=4 SV=... [more]
A0A251PFG88.6e-1853.54Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G040400 PE=4 SV=1[more]
M5WKE28.6e-1853.54Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa015232mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6594620.11.2e-2984.81hypothetical protein SDJN03_11173, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF3451534.15.3e-2260.00hypothetical protein FNV43_RR07629 [Rhamnella rubrinervis][more]
TXG47332.11.7e-2055.45hypothetical protein EZV62_026626 [Acer yangbiense][more]
OAY26128.12.7e-1853.26hypothetical protein MANES_16G023500v8 [Manihot esculenta][more]
OAY24759.16.1e-1851.09hypothetical protein MANES_17G041400v8 [Manihot esculenta][more]
Match NameE-valueIdentityDescription
AT1G11112.16.7e-0744.59unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34538EXPRESSED PROTEINcoord: 1..92
NoneNo IPR availablePANTHERPTHR34538:SF10OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 2, PUTATIVE-RELATEDcoord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0003830.1Pay0003830.1mRNA