Pay0003040 (gene) Melon (Payzawat) v1

Overview
NamePay0003040
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionLEA_2 domain-containing protein
Locationchr11: 15321714 .. 15325230 (+)
RNA-Seq ExpressionPay0003040
SyntenyPay0003040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGAAAGATCGACACAGGAGAGAAGAAGGAGATGAATATCACAATGACGATTATGGCGGATCGGTTACTGAAGACGACAACGGTGTTTTCGAATGTAGTGGCGGGATCTATGTCGTTGAATACGTATACGAGGATTTCAGGTATGGTGAAGATTTTGGGGATTTATATGTTTTGTTTAGTATTCTGATGGAATTTATCGAACGTACATTAAGTATTTACTATAAGAGTTTACACAGTTTGTTTCAACGACACAGAGATAAATACCTTCTCCTTCCTCAAATTACCCCTCTCACTCAATTCATTAGTGTCCTTTTTCGATACTGATTTCCCATTGAATGACGATTTGTGGTTGGTAGAAATCCTTGGGCATTCTCACGGCTTAATTAGCCTCACTCGTCGTCGTTGTGACATTTACCTCTAGAATCCCTTGATTAGAGAGTTTCGTAAACTTCCCCCATCAATATTCTCCTCACTGATCCTCCTAACAGTGACAGGTGCAATTCGTTTATGAGAACCGTTAGATTTGGCTACGATTCAAAATCTATGGATTTTGAAGTGGTTAGGGTCGTGGGTTTTGTAAAATTAGAACCTGAATTATTACCGTTCAAGAGTGGAAATTTATGATTTGAGCAAAGATAGATGGAGAGAAATTGAAAGCCTTTTTCTTGGCAATAGATTCTGGACACCTTCCTTTAAGATGTGTCACGAAGGAACATGTTACTGGTGGGGGCTTAGTGAAGAAGGTACAGGGACTCTAGACACATTCGACATGAGTGGTGAGGTTTTCGGCCAAATTCCTATATGAGAGGATTTCGATGTGATGGCTAACAGGTATAAGTGTTTAGGGGTTTTTAATGGATCCATTATTCTGTTTACTTATCCATATAAAGGATATGATAGAATGTTATTCGACGTGCGGGAGATGGAGAAGGATGAATCTGGTGGGGTTTCTTGGTCAAAGATATTGACAATTGGGTCTATTTTTGGAATTGAGAAGGGATGGTTGATTGTGAACTCCGATGAACTTTTTATAGAGGTCAACGAAGGACGATTGATTTTGTATAATGATACTAAAAGCCGACGCTTGAAGCTTTCAGCTAGTTGTTTTGCTACTGTTTTTGTTAAGAGTTTGGTATTAGAGGGAGGAAATAATGTAACTTATGAATTTTGAATTGATGCATTAGCTTTTACACAAAAATCACTCTAATAACACCACTTATGAATTTTGAGTTCATGCTTTAGCTTTTATACAAAAATCATGTAATCTATTTTCTTGTACTTGATGAGAATCTTGATCTTGTTTATGAATATGAAATTTGAAAGTTTGTCTACACTAAGTTGAGAAACTTTGAGCTTAAAGGATGAAGAATCTTGTTGTTTATGAATATGAAAATGTTGAAATTGGTTTTGTGGAACAAAATAGAAACAAACAACACAAATCATGTTAATTATTTTTCATCATTGCTATAAGCTTTTTCATCAATCATTATTATCCTGTTTTTTGAAGTCTTTTTTTTTTTTGAATAATTTTTTATTGTCAATCAGAGCTATATCTTATCCAGTTATGTTGAAGCTAATTAAGTTTTCCCTTATGTTAACTATAGCTTTGGAAATCTTATATTAAAAGGCCAATGACAATTGTTGGATCAAGCCTTGGTGCTATTGTTGCTATTGATTTTGTTGTCAATTATCTAGAAGCTGTATGTATCTACCAGCAGGAATTTATGACTACAAATTTGAAGTTGTATATTTTTTTCTTAAATTTAAGTAGCTAAAGTTTGTATTAATAGGTTACTGCGATATAGTATTAACTTTTTAACTTTAAGATAGTCATAATTATTCTTGCAATAAGGAGTGATGTTAAATAAAATATGAGTTGCTAAATTTCAACACCTATTACATTAGTTCTTCATATGGATAAGGCCTTATCTTCTTATGGGGTGGATTGTTGAGAATTATATATATGTTTATGTATTGTAGGTCAGGCTCAGTTTGTTTGATGCTATCAACTAAACATGGAGTCCTATCTTTGGTAGGAAACTTCTTGCTGACAATATATATATATAATATGAATATAGTGCATAATTTGTGGTTATTTTTAGTAAGATTTTAGAATAAGGAAGTTGTGATCAAGGAATTGTGATTTAATTTGGGTATTTCTCATTGCAGAGACCTTGTAAATGTTTTTGGAGAGTTTCTTCCAAAAGTTAGTGCTTGTAAAGTATAGCGAGTAATTCTTCCTCATACTTCATCATATGTATCAAGGTGTGTTGGGCATAAAACTTTTAAGTGCACATCAATGAGCTTTTAAATCCTTTGCAAATATACGTACCTCTCACTGTGTTTTGTAGACTATTGCTTATAATCTGTAGTTTGTTTTATTCCTCAGTAATGTATAGTTGGTGAGAAAGAAGGACTTTGAGAACGCATAAAATTAAAAAACTTATTTGTGTTATAGTTAAACGTGAGGTGGAGCTAGCAAGAATAGAATTGACAAATTTTTGTTTTGGAATCCTACTTCTTATAAATTTATTGGCTATTCTGTAGTTTTATTTTCAGTTACACGATGCTCGGCCGATGCGGCCAGACGGGAGGCTACGGAGGGGCAATCGAATCTCTATCATCGGCTTTCCACGCGTCGGGGCGCAGGGACGCACGCCTCATACCCCGATACGCCTCATCCACTATGACCTCTCGTCATGGGACATGTAGCCTATGTACAGCTATCCGTCCGCCACTCACCGGCACTCATGATGATTAGAAAATCCGAGTCTCTGTTGCATAATACTTTTGTGAAAAATATGGTGTGACACTCAAATTTTCATCTTTACCGGCTATACATGCTCGTAATTATGCAAAACCCATTTTAGCCTTTTGATGTTGTTATTGTTGTATGTTTTTGGACTTGTGTGACAAGTTTGGAATTAATTTAGCTGAAGTTTGCGGGCGTTGACTTTGAATATTTGCTAGATCCGTGTTCTTTTCACTCTTTCTAATATGAGATCGATCACTTTGTTAGCCATTTCTATTTCTCTAGTGATTGAAAATAATTTGTCCACTAGTGCTACTTAAACCCAGGTAGCATATATCTTCGCTGACTACCCCATTATATTTTAAGACCTATATTCATGTTGCAACCTATACCCTTCTACATTTCTCCAAATCACCAAGCTTAGAATAGTTATCTAGAATAAAGAACGAACACTTTCACTTTCTAGACCAAGGCTTAGAAACAATACTATGCCTGTTGAGTAGAATGTTCAGCGTAACTCTCTGGTGTTACGCGTGCAATGTGACCTGTACTTAGCTCTGAAATCCAATTTTGTCTGCTTCTCTTCTCACTTCTTCTTTACTTAGGTCCCTTACTAGGAATCCAACTGCGACGCCACACCGAATCAACACCCACTACTTTGCGCGACCCTCAACTTCTTCCATACATTGTATATAGTCTCGCCAACAACAATTTTACCGAATATGTCTCCTCTACCGCGTCACTAAATTTCCTGGCTTAA

mRNA sequence

ATGGCTGGAAAGATCGACACAGGAGAGAAGAAGGAGATGAATATCACAATGACGATTATGGCGGATCGGTTACTGAAGACGACAACGGTGTTTTCGAATGTAGTGGCGGGATCTATGTCGTTGAATACGTATACGAGGATTTCAGGTCCCTTACTAGGAATCCAACTGCGACGCCACACCGAATCAACACCCACTACTTTGCGCGACCCTCAACTTCTTCCATACATTGTATATAGTCTCGCCAACAACAATTTTACCGAATATGTCTCCTCTACCGCGTCACTAAATTTCCTGGCTTAA

Coding sequence (CDS)

ATGGCTGGAAAGATCGACACAGGAGAGAAGAAGGAGATGAATATCACAATGACGATTATGGCGGATCGGTTACTGAAGACGACAACGGTGTTTTCGAATGTAGTGGCGGGATCTATGTCGTTGAATACGTATACGAGGATTTCAGGTCCCTTACTAGGAATCCAACTGCGACGCCACACCGAATCAACACCCACTACTTTGCGCGACCCTCAACTTCTTCCATACATTGTATATAGTCTCGCCAACAACAATTTTACCGAATATGTCTCCTCTACCGCGTCACTAAATTTCCTGGCTTAA

Protein sequence

MAGKIDTGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRISGPLLGIQLRRHTESTPTTLRDPQLLPYIVYSLANNNFTEYVSSTASLNFLA
Homology
[Close]
BLAST of Pay0003040 vs. ExPASy TrEMBL
Match: A0A5D3BPQ5 (F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00560 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.2e-15
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 1  MAGKIDTGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
          MAGKID GEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS
Sbjct: 1  MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 48

[Close]
BLAST of Pay0003040 vs. ExPASy TrEMBL
Match: A0A1S3CJB5 (uncharacterized protein LOC103501497 OS=Cucumis melo OX=3656 GN=LOC103501497 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-13
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MAGKIDTGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRISG--PLLGI 55
           MAGKID GE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RISG   +LGI
Sbjct: 128 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARISGKVKILGI 183

[Close]
BLAST of Pay0003040 vs. ExPASy TrEMBL
Match: A0A0A0L094 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G337360 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MAGKIDTGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRISG--PLLGI 55
           MAGKID GE+KEMNIT+TIMADRLLKTTTVF++ VAGSM LNTYTRISG   +LGI
Sbjct: 127 MAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKILGI 182

[Close]
BLAST of Pay0003040 vs. ExPASy TrEMBL
Match: A0A5D3C2Q6 (LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00590 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 1   MAGKIDTGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
           MAGKID GE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RIS
Sbjct: 127 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARIS 174

[Close]
BLAST of Pay0003040 vs. ExPASy TrEMBL
Match: A0A5A7UIZ3 (LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold438G00110 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 1   MAGKIDTGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
           MAGKID GE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RIS
Sbjct: 128 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARIS 175

[Close]
BLAST of Pay0003040 vs. NCBI nr
Match: TYK01048.1 (F-box protein CPR30-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 1  MAGKIDTGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
          MAGKID GEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS
Sbjct: 1  MAGKIDAGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 48

[Close]
BLAST of Pay0003040 vs. NCBI nr
Match: XP_008463309.1 (PREDICTED: uncharacterized protein LOC103501497 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 3.7e-13
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MAGKIDTGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRISG--PLLGI 55
           MAGKID GE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RISG   +LGI
Sbjct: 128 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARISGKVKILGI 183

[Close]
BLAST of Pay0003040 vs. NCBI nr
Match: XP_004142665.1 (uncharacterized protein LOC101208230 [Cucumis sativus] >KGN54479.1 hypothetical protein Csa_012636 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 6.3e-13
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 1   MAGKIDTGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRISG--PLLGI 55
           MAGKID GE+KEMNIT+TIMADRLLKTTTVF++ VAGSM LNTYTRISG   +LGI
Sbjct: 127 MAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKILGI 182

[Close]
BLAST of Pay0003040 vs. NCBI nr
Match: TYK06201.1 (uncharacterized protein E5676_scaffold287G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.1e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 1   MAGKIDTGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
           MAGKID GE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RIS
Sbjct: 127 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARIS 174

[Close]
BLAST of Pay0003040 vs. NCBI nr
Match: KAA0055893.1 (uncharacterized protein E6C27_scaffold438G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.1e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 1   MAGKIDTGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRIS 49
           MAGKID GE+KEMNIT+TIMADRLLKTTTVFS+VVAGSM LNTY RIS
Sbjct: 128 MAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARIS 175

[Close]
BLAST of Pay0003040 vs. TAIR 10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 44.3 bits (103), Expect = 6.7e-05
Identity = 21/55 (38.18%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 2   AGKIDTGEKKEMNITMTIMADRLLKTTTVFSNVVAGSMSLNTYTRISGPLLGIQL 57
           A +I   +   +NIT+T+MADRLL  T + S+V+AG + LNT+ +++G +  +++
Sbjct: 148 ANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPLNTFVKVTGKVTVLKI 202

The following BLAST results are available for this feature:
BLAST of Pay0003040 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0003040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BPQ57.2e-1597.92F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CJB51.8e-1382.14uncharacterized protein LOC103501497 OS=Cucumis melo OX=3656 GN=LOC103501497 PE=... [more]
A0A0A0L0943.0e-1380.36LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G337360 PE=4 ... [more]
A0A5D3C2Q62.0e-1287.50LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7UIZ32.0e-1287.50LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
BLAST of Pay0003040 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK01048.11.5e-1497.92F-box protein CPR30-like [Cucumis melo var. makuwa][more]
XP_008463309.13.7e-1382.14PREDICTED: uncharacterized protein LOC103501497 [Cucumis melo][more]
XP_004142665.16.3e-1380.36uncharacterized protein LOC101208230 [Cucumis sativus] >KGN54479.1 hypothetical ... [more]
TYK06201.14.1e-1287.50uncharacterized protein E5676_scaffold287G00590 [Cucumis melo var. makuwa][more]
KAA0055893.14.1e-1287.50uncharacterized protein E6C27_scaffold438G00110 [Cucumis melo var. makuwa][more]
BLAST of Pay0003040 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G54200.16.7e-0538.18Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0003040.1Pay0003040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane