Pay0002481 (gene) Melon (Payzawat) v1

Overview


Name	Pay0002481
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	spore coat protein SP96-like
Location	chr09: 14177321 .. 14177810 (-)
RNA-Seq Expression	Pay0002481
Synteny	Pay0002481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATGATTCATGTTCTTGGCGAAAGGAATAGTGGAGGACTAATATGTGTTTATGTGATTTATGAAATGAGGTGTTGAGCTTATGTTTATTAAATGAAAATGATTTATGTGATTGCATTGTGTTCCCTAAAGGTTTTCAAAGCTTTCACTCACTGAGTCATTGACTTATGTTTTAAGTTTTTCCTTCCCCAGGATCCAGTCACACTACTACTACTACCACTACCACTACCACTACCACTACCACTACCACTCATGCTGCTGCTGCTGCTGCTGCTCTACTACTGCTGCTGCTTCTTCTACTACTACTGCTACTGCTGCTACCACTGCTGCCACTACTATCGCTACTACTGCTACCACTGCTGCTACTACCACTGCTACTACTACCACTACTACCACTACTACTACTACTACTGCTACTACTGCTACCACTGCTACTACTACCGCTACCACTGCTGCCGCTACCACTGCTACTTTATCTATGGGGTAG

mRNA sequence

ATGGGAATGATTCATGTTCTTGGCGAAAGGAATAGTGGAGGACTAATATGTGTTTATGTGATTTATGAAATGAGGATCCAGTCACACTACTACTACTACCACTACCACTACCACTACCACTACCACTACCACTCATGCTGCTGCTGCTGCTGCTGCTCTACTACTGCTGCTGCTTCTTCTACTACTACTGCTACTGCTGCTACCACTGCTGCCACTACTATCGCTACTACTGCTACCACTGCTGCTACTACCACTGCTACTACTACCACTACTACCACTACTACTACTACTACTGCTACTACTGCTACCACTGCTACTACTACCGCTACCACTGCTGCCGCTACCACTGCTACTTTATCTATGGGGTAG

Coding sequence (CDS)

ATGGGAATGATTCATGTTCTTGGCGAAAGGAATAGTGGAGGACTAATATGTGTTTATGTGATTTATGAAATGAGGATCCAGTCACACTACTACTACTACCACTACCACTACCACTACCACTACCACTACCACTCATGCTGCTGCTGCTGCTGCTGCTCTACTACTGCTGCTGCTTCTTCTACTACTACTGCTACTGCTGCTACCACTGCTGCCACTACTATCGCTACTACTGCTACCACTGCTGCTACTACCACTGCTACTACTACCACTACTACCACTACTACTACTACTACTGCTACTACTGCTACCACTGCTACTACTACCGCTACCACTGCTGCCGCTACCACTGCTACTTTATCTATGGGGTAG

Protein sequence

MGMIHVLGERNSGGLICVYVIYEMRIQSHYYYYHYHYHYHYHYHSCCCCCCCSTTAAASSTTTATAATTAATTIATTATTAATTTATTTTTTTTTTTTATTATTATTTATTAAATTATLSMG

Homology

[Close]

BLAST of Pay0002481 vs. ExPASy TrEMBL
Match: A0A1S3CJ15 (spore coat protein SP96-like OS=Cucumis melo OX=3656 GN=LOC103501402 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.5e-38
Identity = 122/128 (95.31%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MGMIHVLGERNSGGLICVYVIYEMRIQSHYYY------YHYHYHYHYHYHSCCCCCCCST 60
           MGMIHVLGERNSGGLICVYVIYEMRIQSHYYY      YHYHYHYHYHYHSCCCCCCCST
Sbjct: 1   MGMIHVLGERNSGGLICVYVIYEMRIQSHYYYYHYHYHYHYHYHYHYHYHSCCCCCCCST 60

Query: 61  TAAASSTTTATAATTAATTIATTATTAATTTATTTTTTTTTTTTATTATTATTTATTAAA 120
           TAAASSTTTATAATTAATTIATTATTAATTTATTTTTTTTTTTTATTATTATTTATTAAA
Sbjct: 61  TAAASSTTTATAATTAATTIATTATTAATTTATTTTTTTTTTTTATTATTATTTATTAAA 120

Query: 121 TTATLSMG 123
           TTATLSMG
Sbjct: 121 TTATLSMG 128

[Close]

BLAST of Pay0002481 vs. NCBI nr
Match: XP_008463194.1 (PREDICTED: spore coat protein SP96-like [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-37
Identity = 122/128 (95.31%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MGMIHVLGERNSGGLICVYVIYEMRIQSHYYY------YHYHYHYHYHYHSCCCCCCCST 60
           MGMIHVLGERNSGGLICVYVIYEMRIQSHYYY      YHYHYHYHYHYHSCCCCCCCST
Sbjct: 1   MGMIHVLGERNSGGLICVYVIYEMRIQSHYYYYHYHYHYHYHYHYHYHYHSCCCCCCCST 60

Query: 61  TAAASSTTTATAATTAATTIATTATTAATTTATTTTTTTTTTTTATTATTATTTATTAAA 120
           TAAASSTTTATAATTAATTIATTATTAATTTATTTTTTTTTTTTATTATTATTTATTAAA
Sbjct: 61  TAAASSTTTATAATTAATTIATTATTAATTTATTTTTTTTTTTTATTATTATTTATTAAA 120

Query: 121 TTATLSMG 123
           TTATLSMG
Sbjct: 121 TTATLSMG 128

The following BLAST results are available for this feature:

BLAST of Pay0002481 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0002481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CJ15	7.5e-38	95.31	spore coat protein SP96-like OS=Cucumis melo OX=3656 GN=LOC103501402 PE=4 SV=1	[more]

BLAST of Pay0002481 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463194.1	1.5e-37	95.31	PREDICTED: spore coat protein SP96-like [Cucumis melo]	[more]

BLAST of Pay0002481 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0002481.1	Pay0002481.1	mRNA