Pay0002480 (gene) Melon (Payzawat) v1

Overview
NamePay0002480
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionUnknown protein
Locationchr11: 20471244 .. 20472779 (+)
RNA-Seq ExpressionPay0002480
SyntenyPay0002480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAGGCTCACGATCCATGGCCGATTGGAAAATTGGCCCTATCTTCGTCAAACTTGCGGTTGTGAGCAACCGCTGAATTTTCCGGCCATGGAAAATTGCTTCGTTGGAAGCCATGGCATGGCTGTTTGTAAGAAATTGAAGAGGTCATTTCGCTGCTGCTCAATGTTCCACAAACCCAAGCTTCGCACCTCACGGAACCATCAAATTTCATTGAGGAAGCTAATGGTTTAGCTGTTGAAAGGAATGTCTGACATTTGCAAGTTCTCACCTGGGTTTAAGCAGTAGGGGTTTCTGTGAATATCAATTACCGTAAATGTAGCTGATGTGAAGCAGACGCGAGAAAAAACGGAGTTCTTGTTTGGTCGATCCTAAAAGTAAGGAGAAGCATACACTTGTTTGGTTGCCTAGACGCCGATGCAAATCTTTTAGGGTTGAAGGTTACGTATAGGCTCGGAATGTCTAAACAAAAAGTCAACAAACGCCAACAGTAAACGAATTACAAACATATTTCTGTTGGGTCAAACCCAAAACCATTGAGTTATGAACCAATTTTAGTTTCGACGACTTTGCGAGGAAATTGGAAGTTCTCAGGTCAGTCTAGTAAGTCAATGTTTCTATACCTAGCATTCAAGTGGGGCTGGGAAGAAGAAGAATAGATTTCCTATTTTCTTTTTCCCTCATTTGATTATGATTTCTAGGAAAAAAAAGGGACAGCCTAGTATTTTACTTGGTTGCGTACGAACAAATTTGTTTCTTCTAACCGCTGATTATTAGATTATTTAAAAATCAAATTATTTCTACTGTTTATTTGATTGATATTCGAAGGATCAAACCATCCTATTATATGAACCCTATTAAATTTCTATATTCAACTGCTTGAGAGAACAGGAACCATGACTTTCGGGTGGAATTGGTCATATCTTCTTGTAATCTAACAGTCTTTGGAATTTCAATAATTTTGCCAACAACCCTTTGATCTTTTTTCTGTAAATTATTGAACCGGTCAACTAACCCATCTGTTCATCTTATGAAGACCGTTCCCTGAGGTCGAGGATATGGAGTTTGGACCAGGCGAAGAGACTTGTGCTGGGACCAAGGGGACTAGGATTCTCCAATTTTGGGTGTTGTGGGTCTCCACGGTTAGATTTCATTACTTGCCCTGTGTTCTGAAATGATATTATCATCTTGATTCTTTGATATTTTTCAAGTTTCTGCTGTATCCTTATGAACAAATGTCAAAATGTTTTGGTCATAGAAAAGAATAAAGCAAAAATAATTCTTTTTGGTCATAATCAAATCAAATTCTGTATCATATTTCAACTTTTACTTTTCTCCTACTCCTCCTATCTATCTACCCACCCTTTTGGTTTACTTTACATAAGTATAACATGGAGTAAACCGTGTCATTTTCATTAAGGCAAAACCTGTAAGTTTCTTATTATCTCTAAATATTTAAATGAAACTTGTCTTCTATTTCATCTCCAGGAGCCGCCTCCTTCTGAACCTGCCGCCATACCTGTGAAAATTCGTTAG

mRNA sequence

ATGTTAAGGCTCACGATCCATGGCCGATTGGAAAATTGGCCCTATCTTCGTCAAACTTGCGGTTGTGAGCAACCGCTGAATTTTCCGGCCATGGAAAATTGCTTCGTTGGAAGCCATGGCATGGCTGTTTGTAAGAAATTGAAGAGACCGTTCCCTGAGGTCGAGGATATGGAGTTTGGACCAGGCGAAGAGACTTGTGCTGGGACCAAGGGGACTAGGATTCTCCAATTTTGGGTGTTGTGGGTCTCCACGGAGCCGCCTCCTTCTGAACCTGCCGCCATACCTGTGAAAATTCGTTAG

Coding sequence (CDS)

ATGTTAAGGCTCACGATCCATGGCCGATTGGAAAATTGGCCCTATCTTCGTCAAACTTGCGGTTGTGAGCAACCGCTGAATTTTCCGGCCATGGAAAATTGCTTCGTTGGAAGCCATGGCATGGCTGTTTGTAAGAAATTGAAGAGACCGTTCCCTGAGGTCGAGGATATGGAGTTTGGACCAGGCGAAGAGACTTGTGCTGGGACCAAGGGGACTAGGATTCTCCAATTTTGGGTGTTGTGGGTCTCCACGGAGCCGCCTCCTTCTGAACCTGCCGCCATACCTGTGAAAATTCGTTAG

Protein sequence

MLRLTIHGRLENWPYLRQTCGCEQPLNFPAMENCFVGSHGMAVCKKLKRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVSTEPPPSEPAAIPVKIR
Homology
[Close]
BLAST of Pay0002480 vs. ExPASy TrEMBL
Match: A0A0A0KCA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190440 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 75/108 (69.44%), Postives = 77/108 (71.30%), Query Frame = 0 

Query: 1   MLRLTIHGRLENWPYLRQTCGCEQPLNFPAMENCFVGSHGMAV----------------- 60
           MLRLTIHGRLENW  LRQTCGCEQ LNFPAMENC VGSHGMAV                 
Sbjct: 22  MLRLTIHGRLENWHCLRQTCGCEQLLNFPAMENCLVGSHGMAVQPVYADANPYALKVTYR 81

Query: 61  -------CKKLKRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 85
                    K ++PFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST
Sbjct: 82  FGMSKQKDNKPQKPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 129

[Close]
BLAST of Pay0002480 vs. NCBI nr
Match: KGN47177.2 (hypothetical protein Csa_020828 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 9.6e-38
Identity = 80/99 (80.81%), Postives = 80/99 (80.81%), Query Frame = 0 

Query: 1  MLRLTIHGRLENWPYLRQTCGCEQPLNFPAMENCFVGSHGMA---VCKKLK--------- 60
          MLRLTIHGRLENW  LRQTCGCEQ LNFPAMENC VGSHGMA   VCKKLK         
Sbjct: 1  MLRLTIHGRLENWHCLRQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLKSFDDFARKL 60

Query: 61 ---RPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 85
             RPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST
Sbjct: 61 EVLRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 99

[Close]
BLAST of Pay0002480 vs. NCBI nr
Match: KAG7010553.1 (hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 49 RPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVSTEPPPSEPA 93
          + +PEVE MEFGPG+ET +GTK TRI   WVLWVSTEPPPSEP+
Sbjct: 2  KTYPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPS 45

[Close]
BLAST of Pay0002480 vs. NCBI nr
Match: KAG6570707.1 (Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 51 FPEVEDMEFGPGEETCAGTKGTRILQFWVLWVSTEPPPSEPA 93
          +PEVE MEFGPG+ET +GTK TRI   WVLWVSTEPPPSEP+
Sbjct: 30 YPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPS 71

[Close]
BLAST of Pay0002480 vs. NCBI nr
Match: XP_031743531.1 (uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus] >XP_031743532.1 uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 57 MEFGPGEETCAGTKGTRILQFWVLWVST 85
          MEFGPGEETCAGTKGTRILQFWVLWVST
Sbjct: 1  MEFGPGEETCAGTKGTRILQFWVLWVST 28

[Close]
BLAST of Pay0002480 vs. NCBI nr
Match: KAE8649779.1 (hypothetical protein Csa_012265 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-05
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 53 EVEDMEFGPGEETCAGTKGTRILQFWVLWVSTEPPPSEPA 93
          E+E MEFGPG E  + T  TRI Q WVLW S EPPPS+PA
Sbjct: 56 EIEVMEFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPA 95

The following BLAST results are available for this feature:
BLAST of Pay0002480 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0002480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCA11.1e-3469.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190440 PE=4 SV=1[more]
BLAST of Pay0002480 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47177.29.6e-3880.81hypothetical protein Csa_020828 [Cucumis sativus][more]
KAG7010553.11.1e-0972.73hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6570707.11.4e-0976.19Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_031743531.11.0e-07100.00uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus] >XP_031743532.... [more]
KAE8649779.13.7e-0565.00hypothetical protein Csa_012265 [Cucumis sativus][more]
BLAST of Pay0002480 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0002480.1Pay0002480.1mRNA