Pay0001960 (gene) Melon (Payzawat) v1

Overview


Name	Pay0001960
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	LOB domain-containing protein
Location	chr10: 6889700 .. 6890660 (+)
RNA-Seq Expression	Pay0001960
Synteny	Pay0001960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTATTTTTTCTTGTACTTTAAAGTCTTACCATAATAATTGAGACAATGACAGGCCTCAACTCTTCTACTACTTCTTCTTCTTGTGGTGCTTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTATGATGAAGCTACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCTAAACTTCTCTTACACCTCCCCACACATACCCGAAGCCACGCTGCCATTACCGTCGCTTACGAAGCGCTTGAACGCATGCGCGATCCTACCTATGGTTGCGTTGCACATATCTTTGCATTGCAACAAGAGGTTGTTTTAAAACCCTAAATAACTTAAGCCGATGGATTAATTACAGTAAATTACGTGACAGTAACATTTTTATTCACATGAAACCACTCCAAAACTCTAAAAATTTAAATATGGACAGAGTTACATTTTATCCATGTTCTTTTCACGCTTTTATAATTACTTGGCCAATATACTCCTATTCTAAAATGTCATCATTTAACTCAAAAGCTTAAGTTATACTCTTTCTTAATTCTATCTTCCTCCTTCAGGTTGTGAGCTTGCAAGAGGAGATAGAAATTCTAGGGAGTCAAATTGCGAATCTTGCCACAACCGGTGGGAGCATTGCAGCGGTCGAGAATCCATTTATAGATCAGGTAGTTCAAGTGTCACAGCAGATGGATGGTTTCGAGATGACGAACACAAATTATTATCAAAATGAGCTAGCTTCTGAGTTGCCCTACCAAAGTTTTGATAACATCCAAAATGATAATACTGCTCAAATGATATCTTCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGAGTTTTGTAACTCAAATAATGTTGTTGAGAGTACCTCAGCCTTTGATGTTTCAGTTGAGGAGAATTGTGTTGGTTATCCATGGATAGTTGGATGA

mRNA sequence

TTTTATTTTTTCTTGTACTTTAAAGTCTTACCATAATAATTGAGACAATGACAGGCCTCAACTCTTCTACTACTTCTTCTTCTTGTGGTGCTTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTATGATGAAGCTACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCTAAACTTCTCTTACACCTCCCCACACATACCCGAAGCCACGCTGCCATTACCGTCGCTTACGAAGCGCTTGAACGCATGCGCGATCCTACCTATGGTTGCGTTGCACATATCTTTGCATTGCAACAAGAGGTTGTGAGCTTGCAAGAGGAGATAGAAATTCTAGGGAGTCAAATTGCGAATCTTGCCACAACCGGTGGGAGCATTGCAGCGGTCGAGAATCCATTTATAGATCAGGTAGTTCAAGTGTCACAGCAGATGGATGGTTTCGAGATGACGAACACAAATTATTATCAAAATGAGCTAGCTTCTGAGTTGCCCTACCAAAGTTTTGATAACATCCAAAATGATAATACTGCTCAAATGATATCTTCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGAGTTTTGTAACTCAAATAATGTTGTTGAGAGTACCTCAGCCTTTGATGTTTCAGTTGAGGAGAATTGTGTTGGTTATCCATGGATAGTTGGATGA

Coding sequence (CDS)

ATGACAGGCCTCAACTCTTCTACTACTTCTTCTTCTTGTGGTGCTTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTATGATGAAGCTACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCTAAACTTCTCTTACACCTCCCCACACATACCCGAAGCCACGCTGCCATTACCGTCGCTTACGAAGCGCTTGAACGCATGCGCGATCCTACCTATGGTTGCGTTGCACATATCTTTGCATTGCAACAAGAGGTTGTGAGCTTGCAAGAGGAGATAGAAATTCTAGGGAGTCAAATTGCGAATCTTGCCACAACCGGTGGGAGCATTGCAGCGGTCGAGAATCCATTTATAGATCAGGTAGTTCAAGTGTCACAGCAGATGGATGGTTTCGAGATGACGAACACAAATTATTATCAAAATGAGCTAGCTTCTGAGTTGCCCTACCAAAGTTTTGATAACATCCAAAATGATAATACTGCTCAAATGATATCTTCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGAGTTTTGTAACTCAAATAATGTTGTTGAGAGTACCTCAGCCTTTGATGTTTCAGTTGAGGAGAATTGTGTTGGTTATCCATGGATAGTTGGATGA

Protein sequence

MTGLNSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMISSLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG

Homology

[Close]

BLAST of Pay0001960 vs. ExPASy Swiss-Prot
Match: Q9LHS8 (LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-42
Identity = 85/130 (65.38%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 11  SSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAA 70
           SSCGACKFLRRKC+  CVF+P+FSY++A+SHFAAVHKVFGASNVSK LLHLP H R+ AA
Sbjct: 6   SSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQRNIAA 65

Query: 71  ITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIAAVEN-- 130
           IT++YEAL RMRDP YGCVAHIFAL Q+VV+LQEEIE LGSQ+ N + +  + + + N  
Sbjct: 66  ITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQLNNIP 125

Query: 131 PFIDQVVQVS 139
            F++Q+   +
Sbjct: 126 EFVNQMTMAT 135

[Close]

BLAST of Pay0001960 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.2e-36
Identity = 76/125 (60.80%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 5   NSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTH 64
           +SS++ S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP  
Sbjct: 4   SSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPIS 63

Query: 65  TRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIA 124
            R  AAIT++YEA  R++DP YGCV+HIFALQQ+VV+LQ E+EIL  Q A       S  
Sbjct: 64  DRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSPT 123

Query: 125 AVENP 130
           + ENP
Sbjct: 124 S-ENP 127

[Close]

BLAST of Pay0001960 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 6.1e-35
Identity = 68/104 (65.38%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 13  CGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAIT 72
           CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+P H RS A +T
Sbjct: 38  CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVT 97

Query: 73  VAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANL 117
           + YEA  R+RDP YGCVAHIFALQQ+VV+LQ E+  L + +A+L
Sbjct: 98  ICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

[Close]

BLAST of Pay0001960 vs. ExPASy Swiss-Prot
Match: Q9SLB7 (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.5e-33
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 9   TSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSH 68
           T S CGACKFLRRKC+  C+FAP+FS ++  + FAA+HKVFGASNVSKLLL++P H R  
Sbjct: 12  TGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCE 71

Query: 69  AAITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATT 120
           A +T+AYEA  R+ DP YGCV+HIFALQQ+V  LQ ++  + +QIA   T+
Sbjct: 72  AVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTS 122

[Close]

BLAST of Pay0001960 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.3e-33
Identity = 72/132 (54.55%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 11  SSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAA 70
           S CGACKFLRRKC   CVFAP+F +++  +HFAA+HKVFGASNVSKLL HLP   R  AA
Sbjct: 6   SPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAA 65

Query: 71  ITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGS--------QIANLATTGGS 130
           +T++YEA  R+RDP YGCVAHIFALQQ+V++LQ ++  L +        Q     T GG 
Sbjct: 66  VTISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQGIHHQDVGATTKGGY 125

Query: 131 IAAVENPFIDQV 135
           ++A      DQ+
Sbjct: 126 MSAAATAADDQL 137

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BLAST of Pay0001960 vs. ExPASy TrEMBL
Match: A0A1S3CGM1 (LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE=3 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 8.3e-120
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 0


Query: 1   MTGLNSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60
           MTGLNSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH
Sbjct: 1   MTGLNSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60

Query: 61  LPTHTRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATTG 120
           LPTHTRSHAAITVAYEALERMRDPTYGC+AHIFALQQEVVSLQEEIEILGSQIANLATTG
Sbjct: 61  LPTHTRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLATTG 120

Query: 121 GSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMISSL 180
           GSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMIS L
Sbjct: 121 GSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMISPL 180

Query: 181 FCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 222
           FCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG
Sbjct: 181 FCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 221

[Close]

BLAST of Pay0001960 vs. ExPASy TrEMBL
Match: A0A0A0KNX8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.1e-107
Identity = 204/222 (91.89%), Postives = 209/222 (94.14%), Query Frame = 0


Query: 1   MTGLNSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60
           MTGLNSS +S+SCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH
Sbjct: 1   MTGLNSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60

Query: 61  LPTHTRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATTG 120
           LPTH RSHAAITVAYEALERMRDPTYGCVAHIFALQQEV SLQEEIEILGSQIAN ATTG
Sbjct: 61  LPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATTG 120

Query: 121 GSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDN-TAQMISS 180
           GSIAAV+NPFIDQ VQV QQMDGF M NTNYYQNEL SELPYQSFDN+QNDN TAQMIS 
Sbjct: 121 GSIAAVDNPFIDQ-VQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQMISP 180

Query: 181 LFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 222
           LFCLGEEDGVFEF NSNNVVES SAFDVSVEENC+GYPWIVG
Sbjct: 181 LFCLGEEDGVFEFSNSNNVVES-SAFDVSVEENCIGYPWIVG 220

[Close]

BLAST of Pay0001960 vs. ExPASy TrEMBL
Match: A0A5A7UA24 (LOB domain-containing protein 33-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00800 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.1e-99
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 35  YDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGCVAHIFA 94
           YDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGC+AHIFA
Sbjct: 67  YDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGCIAHIFA 126

Query: 95  LQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQN 154
           LQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQN
Sbjct: 127 LQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQN 186

Query: 155 ELASELPYQSFDNIQNDNTAQMISSLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCV 214
           ELASELPYQSFDNIQNDNTAQMIS LFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCV
Sbjct: 187 ELASELPYQSFDNIQNDNTAQMISPLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCV 246

Query: 215 GYPWIVG 222
           GYPWIVG
Sbjct: 247 GYPWIVG 253

[Close]

BLAST of Pay0001960 vs. ExPASy TrEMBL
Match: A0A5D3BV37 (LOB domain-containing protein 33-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00610 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.1e-99
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 35  YDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGCVAHIFA 94
           YDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGC+AHIFA
Sbjct: 160 YDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGCIAHIFA 219

Query: 95  LQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQN 154
           LQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQN
Sbjct: 220 LQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQN 279

Query: 155 ELASELPYQSFDNIQNDNTAQMISSLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCV 214
           ELASELPYQSFDNIQNDNTAQMIS LFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCV
Sbjct: 280 ELASELPYQSFDNIQNDNTAQMISPLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCV 339

Query: 215 GYPWIVG 222
           GYPWIVG
Sbjct: 340 GYPWIVG 346

[Close]

BLAST of Pay0001960 vs. ExPASy TrEMBL
Match: A0A6J1H1E9 (LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111458694 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.1e-76
Identity = 159/218 (72.94%), Postives = 181/218 (83.03%), Query Frame = 0


Query: 5   NSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTH 64
           +SS++SSSCGACKFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H
Sbjct: 10  SSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMH 69

Query: 65  TRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIA 124
            R+ AAITV YEALERMRDP  GCV HIFALQQEV SLQEEI+ILG+QIANL TTG +I+
Sbjct: 70  VRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAIS 129

Query: 125 AVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASE-LPYQSFDNIQNDNTAQMISSLFCL 184
           AVENPFI        +M+ F M N+N+ QNEL S+ LPY++ D++Q D+  QMIS L CL
Sbjct: 130 AVENPFI--------EMNDFGM-NSNHCQNELPSQLLPYRTSDDVQKDD--QMISPLLCL 189

Query: 185 GEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 222
           GE+DG F FC+SN+VVE TS FDVSVEEN  GYPWI+G
Sbjct: 190 GEKDGGFGFCHSNHVVE-TSGFDVSVEENFGGYPWILG 215

[Close]

BLAST of Pay0001960 vs. NCBI nr
Match: XP_008461694.1 (PREDICTED: LOB domain-containing protein 33-like [Cucumis melo])

HSP 1 Score: 439.5 bits (1129), Expect = 1.7e-119
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 0


Query: 1   MTGLNSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60
           MTGLNSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH
Sbjct: 1   MTGLNSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60

Query: 61  LPTHTRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATTG 120
           LPTHTRSHAAITVAYEALERMRDPTYGC+AHIFALQQEVVSLQEEIEILGSQIANLATTG
Sbjct: 61  LPTHTRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLATTG 120

Query: 121 GSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMISSL 180
           GSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMIS L
Sbjct: 121 GSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMISPL 180

Query: 181 FCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 222
           FCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG
Sbjct: 181 FCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 221

[Close]

BLAST of Pay0001960 vs. NCBI nr
Match: XP_004147712.1 (LOB domain-containing protein 33 [Cucumis sativus] >KGN50569.1 hypothetical protein Csa_021431 [Cucumis sativus])

HSP 1 Score: 398.3 bits (1022), Expect = 4.4e-107
Identity = 204/222 (91.89%), Postives = 209/222 (94.14%), Query Frame = 0


Query: 1   MTGLNSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60
           MTGLNSS +S+SCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH
Sbjct: 1   MTGLNSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 60

Query: 61  LPTHTRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATTG 120
           LPTH RSHAAITVAYEALERMRDPTYGCVAHIFALQQEV SLQEEIEILGSQIAN ATTG
Sbjct: 61  LPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATTG 120

Query: 121 GSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDN-TAQMISS 180
           GSIAAV+NPFIDQ VQV QQMDGF M NTNYYQNEL SELPYQSFDN+QNDN TAQMIS 
Sbjct: 121 GSIAAVDNPFIDQ-VQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQMISP 180

Query: 181 LFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 222
           LFCLGEEDGVFEF NSNNVVES SAFDVSVEENC+GYPWIVG
Sbjct: 181 LFCLGEEDGVFEFSNSNNVVES-SAFDVSVEENCIGYPWIVG 220

[Close]

BLAST of Pay0001960 vs. NCBI nr
Match: KAA0050349.1 (LOB domain-containing protein 33-like [Cucumis melo var. makuwa])

HSP 1 Score: 371.7 bits (953), Expect = 4.4e-99
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 35  YDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGCVAHIFA 94
           YDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGC+AHIFA
Sbjct: 67  YDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGCIAHIFA 126

Query: 95  LQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQN 154
           LQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQN
Sbjct: 127 LQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQN 186

Query: 155 ELASELPYQSFDNIQNDNTAQMISSLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCV 214
           ELASELPYQSFDNIQNDNTAQMIS LFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCV
Sbjct: 187 ELASELPYQSFDNIQNDNTAQMISPLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCV 246

Query: 215 GYPWIVG 222
           GYPWIVG
Sbjct: 247 GYPWIVG 253

[Close]

BLAST of Pay0001960 vs. NCBI nr
Match: TYK03563.1 (LOB domain-containing protein 33-like [Cucumis melo var. makuwa])

HSP 1 Score: 371.7 bits (953), Expect = 4.4e-99
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 35  YDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGCVAHIFA 94
           YDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGC+AHIFA
Sbjct: 160 YDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGCIAHIFA 219

Query: 95  LQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQN 154
           LQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQN
Sbjct: 220 LQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQN 279

Query: 155 ELASELPYQSFDNIQNDNTAQMISSLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCV 214
           ELASELPYQSFDNIQNDNTAQMIS LFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCV
Sbjct: 280 ELASELPYQSFDNIQNDNTAQMISPLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCV 339

Query: 215 GYPWIVG 222
           GYPWIVG
Sbjct: 340 GYPWIVG 346

[Close]

BLAST of Pay0001960 vs. NCBI nr
Match: XP_038889414.1 (LOB domain-containing protein 33-like [Benincasa hispida])

HSP 1 Score: 363.2 bits (931), Expect = 1.6e-96
Identity = 189/225 (84.00%), Postives = 200/225 (88.89%), Query Frame = 0


Query: 1   MTGLN----SSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSK 60
           MTGLN    SS++SSSCGACKFLRRKCSDQCVFAPFFSY+EATSHFAAVHKVFGASNVSK
Sbjct: 1   MTGLNSSISSSSSSSSCGACKFLRRKCSDQCVFAPFFSYEEATSHFAAVHKVFGASNVSK 60

Query: 61  LLLHLPTHTRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANL 120
           LLLHLP H RSHAA+TVAYEALERMRDPTYGCVAHIFALQQEV SLQEEIEILGSQIAN 
Sbjct: 61  LLLHLPVHIRSHAAVTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANF 120

Query: 121 ATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQM 180
           A  GGSIAAVENP IDQ +QVSQQ++ F + NTN YQNEL SELPYQSFDN+QNDN  QM
Sbjct: 121 AAAGGSIAAVENPLIDQ-LQVSQQLNDFGVMNTNDYQNELLSELPYQSFDNVQNDN-GQM 180

Query: 181 ISSLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 222
           IS LFCLGEEDGV  FCNSNNVVE  SAFDVSVEEN +GYPW+VG
Sbjct: 181 ISPLFCLGEEDGVLGFCNSNNVVE-RSAFDVSVEENFIGYPWVVG 222

[Close]

BLAST of Pay0001960 vs. TAIR 10
Match: AT5G06080.1 (LOB domain-containing protein 33 )

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-43
Identity = 85/130 (65.38%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 11  SSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAA 70
           SSCGACKFLRRKC+  CVF+P+FSY++A+SHFAAVHKVFGASNVSK LLHLP H R+ AA
Sbjct: 6   SSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQRNIAA 65

Query: 71  ITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIAAVEN-- 130
           IT++YEAL RMRDP YGCVAHIFAL Q+VV+LQEEIE LGSQ+ N + +  + + + N  
Sbjct: 66  ITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQLNNIP 125

Query: 131 PFIDQVVQVS 139
            F++Q+   +
Sbjct: 126 EFVNQMTMAT 135

[Close]

BLAST of Pay0001960 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 152.1 bits (383), Expect = 5.1e-37
Identity = 76/125 (60.80%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 5   NSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTH 64
           +SS++ S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP  
Sbjct: 4   SSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPIS 63

Query: 65  TRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIA 124
            R  AAIT++YEA  R++DP YGCV+HIFALQQ+VV+LQ E+EIL  Q A       S  
Sbjct: 64  DRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSPT 123

Query: 125 AVENP 130
           + ENP
Sbjct: 124 S-ENP 127

[Close]

BLAST of Pay0001960 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 149.1 bits (375), Expect = 4.3e-36
Identity = 68/104 (65.38%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 13  CGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAIT 72
           CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+P H RS A +T
Sbjct: 38  CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVT 97

Query: 73  VAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANL 117
           + YEA  R+RDP YGCVAHIFALQQ+VV+LQ E+  L + +A+L
Sbjct: 98  ICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

[Close]

BLAST of Pay0001960 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-34
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 9   TSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSH 68
           T S CGACKFLRRKC+  C+FAP+FS ++  + FAA+HKVFGASNVSKLLL++P H R  
Sbjct: 12  TGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCE 71

Query: 69  AAITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATT 120
           A +T+AYEA  R+ DP YGCV+HIFALQQ+V  LQ ++  + +QIA   T+
Sbjct: 72  AVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTS 122

[Close]

BLAST of Pay0001960 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-33
Identity = 77/162 (47.53%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 9   TSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSH 68
           + S CGACKFLRR+C   CVFAP+F +++  SHFAA+H+VFGASN SKLL HLP   R  
Sbjct: 4   SGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRRE 63

Query: 69  AAITVAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIAAVEN 128
           AA T+ YEA  R +DP YGCV+HIF+LQQ+VV+LQ ++EIL  Q         S+ A+++
Sbjct: 64  AATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQ------SMMAIDS 123

Query: 129 PFID----------QVVQVSQQMDGFEMTNTNYYQNELASEL 161
           P I+          Q +Q S  +    +T +N  Q E  S+L
Sbjct: 124 PSIENPNYYQDTKPQYLQESHDLHHHHLTTSN-CQTEQNSDL 158

The following BLAST results are available for this feature:

BLAST of Pay0001960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHS8	1.8e-42	65.38	LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 S...	[more]
Q9M2J7	7.2e-36	60.80	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
O22131	6.1e-35	65.38	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q9SLB7	2.5e-33	59.46	LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 S...	[more]
Q5UG13	4.3e-33	54.55	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]

BLAST of Pay0001960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CGM1	8.3e-120	99.10	LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE...	[more]
A0A0A0KNX8	2.1e-107	91.89	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV...	[more]
A0A5A7UA24	2.1e-99	98.93	LOB domain-containing protein 33-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BV37	2.1e-99	98.93	LOB domain-containing protein 33-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1H1E9	1.1e-76	72.94	LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111458...	[more]

BLAST of Pay0001960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461694.1	1.7e-119	99.10	PREDICTED: LOB domain-containing protein 33-like [Cucumis melo]	[more]
XP_004147712.1	4.4e-107	91.89	LOB domain-containing protein 33 [Cucumis sativus] >KGN50569.1 hypothetical prot...	[more]
KAA0050349.1	4.4e-99	98.93	LOB domain-containing protein 33-like [Cucumis melo var. makuwa]	[more]
TYK03563.1	4.4e-99	98.93	LOB domain-containing protein 33-like [Cucumis melo var. makuwa]	[more]
XP_038889414.1	1.6e-96	84.00	LOB domain-containing protein 33-like [Benincasa hispida]	[more]

BLAST of Pay0001960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06080.1	1.3e-43	65.38	LOB domain-containing protein 33	[more]
AT3G58190.1	5.1e-37	60.80	lateral organ boundaries-domain 29	[more]
AT2G45420.1	4.3e-36	65.38	LOB domain-containing protein 18	[more]
AT2G42430.1	1.8e-34	59.46	lateral organ boundaries-domain 16	[more]
AT2G42440.1	1.5e-33	47.53	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	PANTHER	PTHR31529:SF50	LOB DOMAIN-CONTAINING PROTEIN 33	coord: 1..203
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 1..203
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 12..108 e-value: 2.1E-33 score: 114.8
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 11..113 score: 21.837048

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0001960.1	Pay0001960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus