Pay0001692 (gene) Melon (Payzawat) v1

Overview


Name	Pay0001692
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	G-box-binding factor 1-like
Location	chr01: 24728906 .. 24730106 (+)
RNA-Seq Expression	Pay0001692
Synteny	Pay0001692

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACAAGGGAAGAGGGCACACCTTCTAAAACTCAGAAACCTCCCTCTTCATCTCAGGTGATATAATTAACCTTCCTTCCTTTTGCCTATTTTCATTCCCAAGTTGTTGATACATTGATATTTTTTTACTTGTTACGCATAAGAAATACCTCCAACACCTTCATATCCTGATTGGTCAAGCTCAGTGCAGGTCTATCTATATGGTCTTTTGATTTCATACTAATTGTTGTTTGGATTCATAAACACCTAGAATAGTATGATTCAAACACTTAGAATAGTAACGAAGATGTCGATGAATACCACTGGCTTAAAGTGTAGCCTCTTCTGTAACTGTAGGCTTATTATAGTGCTGGTGCTACTCCACCTCCATTCTTTGCATCTACTATTACTTCTCCAACTCCCCACCCTTACATATGGGGAGGTCAGGTAATTATAATTTTCTATTGTCCCTATAAAATTTTATGGAGTTTGATATTTTCCATAGAGGACAAGATAATAATGTTCCTATTTTCTTAATTTTATGTTACATTTTTCAGCATCCTTTGATGTTACCTTATGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTAGAGAGTTTATGCCCATCCCAATATCATTGTGGTAATCACCCTTTTATATTATAGGCTAGTGGATTTTATTTATATTCAAATCAATGAATCTTTTTTCTCCATGGTTTCATCTCAATATCATTTGCTCTTTACCTGACCATTTCTTCTTAAATACCTACAAAATCATTAGACTGAAATAGAAGGATTAAGTTAGTCCTTGATATAATTGTTCTTTTTTTCTTTTGTAGACTCCTGGCTCTGTTCCAATCAATGTTGAATATGAAGGGAAATCCCTTGATGGAAAAGAAAGGGCCTAAAAAAATCCAAGGGCATGTTAGGAAATACTGCTTCAGCTGGCGATAGGAAGAGTGGAAAGATGGCTTCAAGTTTTGGAAATGATGGTGCTTCTCAAAGGTGTTTTAACTTGGGACTTTATGCAGGTTGTATTTTATTTTAAAATTAACTTCAAGTTATGCTACTTTTTGTTTTTTAAATTTTCAAATTTCTTTTTTGATATTTTTGTACATTCGTAAAAAGTATATTATAAAAAGTTAATCGAACAACTCTTGCAGGGCCTGTTAATGAGCCTGGTTCTTCGAGTAAGGAACCTAATGCTAAAGCTTAA

mRNA sequence

ATGGGGACAAGGGAAGAGGGCACACCTTCTAAAACTCAGAAACCTCCCTCTTCATCTCAGGCTTATTATAGTGCTGGTGCTACTCCACCTCCATTCTTTGCATCTACTATTACTTCTCCAACTCCCCACCCTTACATATGGGGAGGTCAGGAAATACTGCTTCAGCTGGCGATAGGAAGAGTGGAAAGATGGCTTCAAGTTTTGGAAATGATGGTGCTTCTCAAAGGGCCTGTTAATGAGCCTGGTTCTTCGAGTAAGGAACCTAATGCTAAAGCTTAA

Coding sequence (CDS)

ATGGGGACAAGGGAAGAGGGCACACCTTCTAAAACTCAGAAACCTCCCTCTTCATCTCAGGCTTATTATAGTGCTGGTGCTACTCCACCTCCATTCTTTGCATCTACTATTACTTCTCCAACTCCCCACCCTTACATATGGGGAGGTCAGGAAATACTGCTTCAGCTGGCGATAGGAAGAGTGGAAAGATGGCTTCAAGTTTTGGAAATGATGGTGCTTCTCAAAGGGCCTGTTAATGAGCCTGGTTCTTCGAGTAAGGAACCTAATGCTAAAGCTTAA

Protein sequence

MGTREEGTPSKTQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQEILLQLAIGRVERWLQVLEMMVLLKGPVNEPGSSSKEPNAKA

Homology

[Close]

BLAST of Pay0001692 vs. ExPASy Swiss-Prot
Match: P42774 (G-box-binding factor 1 OS=Arabidopsis thaliana OX=3702 GN=GBF1 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-08
Identity = 31/69 (44.93%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 1  MGTREEGTPSKTQKPPSSS---------------QAYYSAGATPPPFFASTITSPTPHPY 55
          MGT E+  P KT KP SS+               QAYY  G TP PFF S + SP+PHPY
Sbjct: 1  MGTSEDKMPFKTTKPTSSAQEVPPTPYPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHPY 60

[Close]

BLAST of Pay0001692 vs. ExPASy Swiss-Prot
Match: Q99091 (Light-inducible protein CPRF3 OS=Petroselinum crispum OX=4043 GN=CPRF3 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.6e-05
Identity = 30/67 (44.78%), Postives = 34/67 (50.75%), Query Frame = 0


Query: 1  MGTREEGTPSKTQKPP-----------------SSSQAYYSAGATPPPFFASTITSPTPH 51
          M   EEGTP K  KP                  SS QAYY  GA P  F+AST+ SP+PH
Sbjct: 1  MSDGEEGTPMKHPKPASSVEEAPITTTPFPDLLSSMQAYY-GGAAPAAFYASTVGSPSPH 60

[Close]

BLAST of Pay0001692 vs. ExPASy TrEMBL
Match: A0A1S4DYI6 (G-box-binding factor 1-like OS=Cucumis melo OX=3656 GN=LOC103492701 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.7e-39
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MGTREEGTPSKTQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQEILLQLAIGR 60
          MGTREEGTPSKT KPPSSS AYYSAGATPPPFFASTI SPTP PYIWGGQEILLQLA+GR
Sbjct: 1  MGTREEGTPSKTLKPPSSS-AYYSAGATPPPFFASTIASPTPRPYIWGGQEILLQLAVGR 60

Query: 61 VERWLQVLEMMVLLKGPVNEPGSSSKEPNAKA 93
          VERWLQVLEMMVLLKGPVNEPGSSS+EPNAKA
Sbjct: 61 VERWLQVLEMMVLLKGPVNEPGSSSREPNAKA 91

[Close]

BLAST of Pay0001692 vs. ExPASy TrEMBL
Match: A0A5A7UVQ0 (G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00660 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.7e-29
Identity = 67/81 (82.72%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 12  TQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQEILLQLAIGRVERWLQVLEMM 71
           T +    ++AYYS GATP PFFASTI SPTPHPYIWGGQEILLQLA+GRVERWLQV EMM
Sbjct: 61  THRQLFEAEAYYSVGATPRPFFASTIASPTPHPYIWGGQEILLQLAVGRVERWLQVPEMM 120

Query: 72  VLLKGPVNEPGSSSKEPNAKA 93
           VLLKGPVNEPGSSS+EPNAKA
Sbjct: 121 VLLKGPVNEPGSSSREPNAKA 141

[Close]

BLAST of Pay0001692 vs. ExPASy TrEMBL
Match: A0A5D3DBQ7 (G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00320 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.7e-29
Identity = 67/81 (82.72%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 12  TQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQEILLQLAIGRVERWLQVLEMM 71
           T +    ++AYYS GATP PFFASTI SPTPHPYIWGGQEILLQLA+GRVERWLQV EMM
Sbjct: 107 THRQLFEAEAYYSVGATPRPFFASTIASPTPHPYIWGGQEILLQLAVGRVERWLQVPEMM 166

Query: 72  VLLKGPVNEPGSSSKEPNAKA 93
           VLLKGPVNEPGSSS+EPNAKA
Sbjct: 167 VLLKGPVNEPGSSSREPNAKA 187

[Close]

BLAST of Pay0001692 vs. ExPASy TrEMBL
Match: A0A5A7TG63 (G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00830 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.1e-20
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  MGTREEGTPSKTQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQEILL 55
          MGTREEGTPSKTQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQ  L+
Sbjct: 1  MGTREEGTPSKTQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQHPLM 54

[Close]

BLAST of Pay0001692 vs. ExPASy TrEMBL
Match: A0A5A7U079 (G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1874G00030 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.0e-19
Identity = 59/93 (63.44%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 20  QAYYSAGATPPPFFASTITSPTPHPYIWGGQEILL------------------QLAIGRV 79
           +AYYSAGATPPPFFASTI SPTPHPYIWGGQ  L+                    A GR 
Sbjct: 64  KAYYSAGATPPPFFASTIASPTPHPYIWGGQHPLMLPYGTPVPYPAIYHYGNTASAGGRK 123

Query: 80  --ERWLQVLEMMVLLKGPVNEPGSSSKEPNAKA 93
             + WLQVLEM+VLLKGPVNE GSSS+EPNAKA
Sbjct: 124 SGKVWLQVLEMIVLLKGPVNESGSSSREPNAKA 156

[Close]

BLAST of Pay0001692 vs. NCBI nr
Match: XP_016901046.1 (PREDICTED: G-box-binding factor 1-like [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 1.4e-38
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MGTREEGTPSKTQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQEILLQLAIGR 60
          MGTREEGTPSKT KPPSSS AYYSAGATPPPFFASTI SPTP PYIWGGQEILLQLA+GR
Sbjct: 1  MGTREEGTPSKTLKPPSSS-AYYSAGATPPPFFASTIASPTPRPYIWGGQEILLQLAVGR 60

Query: 61 VERWLQVLEMMVLLKGPVNEPGSSSKEPNAKA 93
          VERWLQVLEMMVLLKGPVNEPGSSS+EPNAKA
Sbjct: 61 VERWLQVLEMMVLLKGPVNEPGSSSREPNAKA 91

[Close]

BLAST of Pay0001692 vs. NCBI nr
Match: TYK21003.1 (G-box-binding factor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 7.6e-29
Identity = 67/81 (82.72%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 12  TQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQEILLQLAIGRVERWLQVLEMM 71
           T +    ++AYYS GATP PFFASTI SPTPHPYIWGGQEILLQLA+GRVERWLQV EMM
Sbjct: 107 THRQLFEAEAYYSVGATPRPFFASTIASPTPHPYIWGGQEILLQLAVGRVERWLQVPEMM 166

Query: 72  VLLKGPVNEPGSSSKEPNAKA 93
           VLLKGPVNEPGSSS+EPNAKA
Sbjct: 167 VLLKGPVNEPGSSSREPNAKA 187

[Close]

BLAST of Pay0001692 vs. NCBI nr
Match: KAA0057591.1 (G-box-binding factor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 7.6e-29
Identity = 67/81 (82.72%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 12  TQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQEILLQLAIGRVERWLQVLEMM 71
           T +    ++AYYS GATP PFFASTI SPTPHPYIWGGQEILLQLA+GRVERWLQV EMM
Sbjct: 61  THRQLFEAEAYYSVGATPRPFFASTIASPTPHPYIWGGQEILLQLAVGRVERWLQVPEMM 120

Query: 72  VLLKGPVNEPGSSSKEPNAKA 93
           VLLKGPVNEPGSSS+EPNAKA
Sbjct: 121 VLLKGPVNEPGSSSREPNAKA 141

[Close]

BLAST of Pay0001692 vs. NCBI nr
Match: KAA0042213.1 (G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa] >TYK26783.1 G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.4e-20
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  MGTREEGTPSKTQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQEILL 55
          MGTREEGTPSKTQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQ  L+
Sbjct: 1  MGTREEGTPSKTQKPPSSSQAYYSAGATPPPFFASTITSPTPHPYIWGGQHPLM 54

[Close]

BLAST of Pay0001692 vs. NCBI nr
Match: KAA0047055.1 (G-box-binding factor 1-like [Cucumis melo var. makuwa] >TYK09364.1 G-box-binding factor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 4.2e-19
Identity = 59/93 (63.44%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 20  QAYYSAGATPPPFFASTITSPTPHPYIWGGQEILL------------------QLAIGRV 79
           +AYYSAGATPPPFFASTI SPTPHPYIWGGQ  L+                    A GR 
Sbjct: 64  KAYYSAGATPPPFFASTIASPTPHPYIWGGQHPLMLPYGTPVPYPAIYHYGNTASAGGRK 123

Query: 80  --ERWLQVLEMMVLLKGPVNEPGSSSKEPNAKA 93
             + WLQVLEM+VLLKGPVNE GSSS+EPNAKA
Sbjct: 124 SGKVWLQVLEMIVLLKGPVNESGSSSREPNAKA 156

[Close]

BLAST of Pay0001692 vs. TAIR 10
Match: AT4G36730.1 (G-box binding factor 1 )

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-09
Identity = 31/69 (44.93%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 1  MGTREEGTPSKTQKPPSSS---------------QAYYSAGATPPPFFASTITSPTPHPY 55
          MGT E+  P KT KP SS+               QAYY  G TP PFF S + SP+PHPY
Sbjct: 1  MGTSEDKMPFKTTKPTSSAQEVPPTPYPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHPY 60

[Close]

BLAST of Pay0001692 vs. TAIR 10
Match: AT4G36730.2 (G-box binding factor 1 )

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-09
Identity = 31/69 (44.93%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 1  MGTREEGTPSKTQKPPSSS---------------QAYYSAGATPPPFFASTITSPTPHPY 55
          MGT E+  P KT KP SS+               QAYY  G TP PFF S + SP+PHPY
Sbjct: 1  MGTSEDKMPFKTTKPTSSAQEVPPTPYPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHPY 60

The following BLAST results are available for this feature:

BLAST of Pay0001692 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42774	4.5e-08	44.93	G-box-binding factor 1 OS=Arabidopsis thaliana OX=3702 GN=GBF1 PE=1 SV=2	[more]
Q99091	4.6e-05	44.78	Light-inducible protein CPRF3 OS=Petroselinum crispum OX=4043 GN=CPRF3 PE=2 SV=1	[more]

BLAST of Pay0001692 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DYI6	6.7e-39	93.48	G-box-binding factor 1-like OS=Cucumis melo OX=3656 GN=LOC103492701 PE=3 SV=1	[more]
A0A5A7UVQ0	3.7e-29	82.72	G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DBQ7	3.7e-29	82.72	G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TG63	3.1e-20	94.44	G-box-binding factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U079	2.0e-19	63.44	G-box-binding factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Pay0001692 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901046.1	1.4e-38	93.48	PREDICTED: G-box-binding factor 1-like [Cucumis melo]	[more]
TYK21003.1	7.6e-29	82.72	G-box-binding factor 1-like [Cucumis melo var. makuwa]	[more]
KAA0057591.1	7.6e-29	82.72	G-box-binding factor 1-like [Cucumis melo var. makuwa]	[more]
KAA0042213.1	6.4e-20	94.44	G-box-binding factor 1 isoform X1 [Cucumis melo var. makuwa] >TYK26783.1 G-box-b...	[more]
KAA0047055.1	4.2e-19	63.44	G-box-binding factor 1-like [Cucumis melo var. makuwa] >TYK09364.1 G-box-binding...	[more]

BLAST of Pay0001692 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36730.1	3.2e-09	44.93	G-box binding factor 1	[more]
AT4G36730.2	3.2e-09	44.93	G-box binding factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012900	G-box binding protein, multifunctional mosaic region	PFAM	PF07777	MFMR	coord: 15..53 e-value: 2.8E-9 score: 37.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR45967:SF20	G-BOX-BINDING FACTOR 1	coord: 1..53
IPR044827	G-box-binding factor-like	PANTHER	PTHR45967	G-BOX-BINDING FACTOR 3-RELATED	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0001692.1	Pay0001692.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding