Pay0001415 (gene) Melon (Payzawat) v1

Overview


Name	Pay0001415
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	60S ribosomal protein L7a
Location	chr10: 24748492 .. 24748868 (+)
RNA-Seq Expression	Pay0001415
Synteny	Pay0001415

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGGCTTGTGCAAAATGGAACCAAAGAAGTGGTTGGAAATCGCTTGGCAAAAAAGAAGCTGGAGAAGGTAGATTCTTAAATGGTTTGTTAAATGGCCAAAAGTTGTTAAAAATTCAGAGGAAGAAGGGGATACATAAACAGAGGTTGAAGATTCCACCATCTTCGAATCAGTTCACTAAGACCTTCGACAAAAATCTTGCGACTAACCTGTTCAAGATGCTTTTGAAATATAGGGCAGAGGACAAATCACAGAAAAGGTATAAGTGGAGTTCAGCAGGATTCTTGAAGTCATTTAAGGGCAATTTCAACAAGTACGACGACGACAATAAGAAGTGGGGAGGTGGAAATCATGGGCTCCAAGTCTTAGGCTAA

mRNA sequence

ATGGATAGGCTTGTGCAAAATGGAACCAAAGAAGTGGTTGGAAATCGCTTGGCAAAAAAGAAGCTGGAGAAGAGGAAGAAGGGGATACATAAACAGAGGTTGAAGATTCCACCATCTTCGAATCAGTTCACTAAGACCTTCGACAAAAATCTTGCGACTAACCTGTTCAAGATGCTTTTGAAATATAGGGCAGAGGACAAATCACAGAAAAGGTATAAGTGGAGTTCAGCAGGATTCTTGAAGTCATTTAAGGGCAATTTCAACAAGTACGACGACGACAATAAGAAGTGGGGAGGTGGAAATCATGGGCTCCAAGTCTTAGGCTAA

Coding sequence (CDS)

ATGGATAGGCTTGTGCAAAATGGAACCAAAGAAGTGGTTGGAAATCGCTTGGCAAAAAAGAAGCTGGAGAAGAGGAAGAAGGGGATACATAAACAGAGGTTGAAGATTCCACCATCTTCGAATCAGTTCACTAAGACCTTCGACAAAAATCTTGCGACTAACCTGTTCAAGATGCTTTTGAAATATAGGGCAGAGGACAAATCACAGAAAAGGTATAAGTGGAGTTCAGCAGGATTCTTGAAGTCATTTAAGGGCAATTTCAACAAGTACGACGACGACAATAAGAAGTGGGGAGGTGGAAATCATGGGCTCCAAGTCTTAGGCTAA

Protein sequence

MDRLVQNGTKEVVGNRLAKKKLEKRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFNKYDDDNKKWGGGNHGLQVLG

Homology

[Close]

BLAST of Pay0001415 vs. ExPASy Swiss-Prot
Match: P35685 (60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-1 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-11
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 24  KRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 72
           +R++ I KQRLK+PP+ NQFT+T DKNLATNLFKMLLKYR EDK+ K+
Sbjct: 57  QRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKK 104

[Close]

BLAST of Pay0001415 vs. ExPASy Swiss-Prot
Match: P0DKK7 (60S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-2 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-11
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 24  KRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 72
           +R++ I KQRLK+PP+ NQFT+T DKNLATNLFKMLLKYR EDK+ K+
Sbjct: 57  QRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKK 104

[Close]

BLAST of Pay0001415 vs. ExPASy Swiss-Prot
Match: P49692 (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-11
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 24  KRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 72
           +R+K I KQRLK+PP+ NQFTKT DKNLAT+LFK+LLKYR EDK+ K+
Sbjct: 56  QRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKK 103

[Close]

BLAST of Pay0001415 vs. ExPASy Swiss-Prot
Match: Q9LZH9 (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7AB PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-11
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 24  KRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 72
           +R+K I KQRLK+PP+ NQFTKT DKNLAT+LFK+LLKYR EDK+ K+
Sbjct: 55  QRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAKK 102

[Close]

BLAST of Pay0001415 vs. ExPASy Swiss-Prot
Match: Q54ZD1 (60S ribosomal protein L7a OS=Dictyostelium discoideum OX=44689 GN=rpl7a PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 21  KLEKRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 72
           KL+++++ + K RLK+PP+ NQFT+ FDKN A +LFK+L KYR E+ S K+
Sbjct: 77  KLQRQRRVLLK-RLKVPPTINQFTRVFDKNTAVHLFKLLDKYRPEEASVKK 126

[Close]

BLAST of Pay0001415 vs. ExPASy TrEMBL
Match: A0A1S3CM74 (60S ribosomal protein L7a OS=Cucumis melo OX=3656 GN=LOC103502565 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.3e-53
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MDRLVQNGTKEVVGNRLAKKKLEKRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLL 60
           MDRLVQNGTKEVVGNRLAKKKLEKRKKG+HKQRLKIPPSSNQFTKTFDKNLATNLFKMLL
Sbjct: 1   MDRLVQNGTKEVVGNRLAKKKLEKRKKGMHKQRLKIPPSSNQFTKTFDKNLATNLFKMLL 60

Query: 61  KYRAEDKSQKRYKWSSAGFLKSFKGNFNKYDDDNKKWGGGNHGLQVLG 109
           KYRAEDKSQKRYKWSSAGFLKSFKGNFNKYDDDNKKWGGGNHGLQVLG
Sbjct: 61  KYRAEDKSQKRYKWSSAGFLKSFKGNFNKYDDDNKKWGGGNHGLQVLG 108

[Close]

BLAST of Pay0001415 vs. ExPASy TrEMBL
Match: A0A5A7VJ69 (60S ribosomal protein L7a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00600 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.6e-38
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 29  IHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN 88
           +HKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN
Sbjct: 1   MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN 60

Query: 89  KYDDDNKKWGGGNHGLQVLG 109
           KYDDDNKKWGGGNHGLQVLG
Sbjct: 61  KYDDDNKKWGGGNHGLQVLG 80

[Close]

BLAST of Pay0001415 vs. ExPASy TrEMBL
Match: A0A059CYF1 (60S ribosomal protein L7a OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B00159 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.9e-13
Identity = 50/91 (54.95%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 24  KRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKS----------QKRYK 83
           +RK+ I +QRLK+PP+ NQFTKT DKNLATNLFKMLLKYR EDK           +   K
Sbjct: 104 QRKRRILRQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKKTASALCLTTVKNEDK 163

Query: 84  WSSAGFLKSFKGNFN-KYDDDNKKWGGGNHG 104
              +  L++ K NFN KYD+  KKWGGG  G
Sbjct: 164 LEFSKILEAIKANFNDKYDEYRKKWGGGIMG 194

[Close]

BLAST of Pay0001415 vs. ExPASy TrEMBL
Match: A0A5A7VB90 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00720 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 20  KKLEKRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAE 66
           K + +RKKGI KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRA+
Sbjct: 601 KNVVRRKKGILKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAK 646

[Close]

BLAST of Pay0001415 vs. ExPASy TrEMBL
Match: A0A5D3DZF5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00190 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 20  KKLEKRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAE 66
           K + +RKKGI KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRA+
Sbjct: 561 KNVVRRKKGILKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAK 606

[Close]

BLAST of Pay0001415 vs. NCBI nr
Match: XP_008464759.1 (PREDICTED: uncharacterized protein LOC103502565 [Cucumis melo])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MDRLVQNGTKEVVGNRLAKKKLEKRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLL 60
           MDRLVQNGTKEVVGNRLAKKKLEKRKKG+HKQRLKIPPSSNQFTKTFDKNLATNLFKMLL
Sbjct: 1   MDRLVQNGTKEVVGNRLAKKKLEKRKKGMHKQRLKIPPSSNQFTKTFDKNLATNLFKMLL 60

Query: 61  KYRAEDKSQKRYKWSSAGFLKSFKGNFNKYDDDNKKWGGGNHGLQVLG 109
           KYRAEDKSQKRYKWSSAGFLKSFKGNFNKYDDDNKKWGGGNHGLQVLG
Sbjct: 61  KYRAEDKSQKRYKWSSAGFLKSFKGNFNKYDDDNKKWGGGNHGLQVLG 108

[Close]

BLAST of Pay0001415 vs. NCBI nr
Match: KAA0065509.1 (60S ribosomal protein L7a-2-like isoform X2 [Cucumis melo var. makuwa] >TYK08749.1 60S ribosomal protein L7a-2-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.8e-37
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 29  IHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN 88
           +HKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN
Sbjct: 1   MHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKRYKWSSAGFLKSFKGNFN 60

Query: 89  KYDDDNKKWGGGNHGLQVLG 109
           KYDDDNKKWGGGNHGLQVLG
Sbjct: 61  KYDDDNKKWGGGNHGLQVLG 80

[Close]

BLAST of Pay0001415 vs. NCBI nr
Match: KCW83216.1 (hypothetical protein EUGRSUZ_B00159 [Eucalyptus grandis])

HSP 1 Score: 85.1 bits (209), Expect = 4.0e-13
Identity = 50/91 (54.95%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 24  KRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKS----------QKRYK 83
           +RK+ I +QRLK+PP+ NQFTKT DKNLATNLFKMLLKYR EDK           +   K
Sbjct: 104 QRKRRILRQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKKTASALCLTTVKNEDK 163

Query: 84  WSSAGFLKSFKGNFN-KYDDDNKKWGGGNHG 104
              +  L++ K NFN KYD+  KKWGGG  G
Sbjct: 164 LEFSKILEAIKANFNDKYDEYRKKWGGGIMG 194

[Close]

BLAST of Pay0001415 vs. NCBI nr
Match: XP_038875632.1 (60S ribosomal protein L7a-2-like [Benincasa hispida])

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-11
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 24  KRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 72
           +RKK I KQRLK+PP+ NQFTKT DKNLATNLFKMLLKYR EDKSQKR
Sbjct: 56  QRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKSQKR 103

[Close]

BLAST of Pay0001415 vs. NCBI nr
Match: TYK29257.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-11
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 20  KKLEKRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAE 66
           K + +RKKGI KQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRA+
Sbjct: 561 KNVVRRKKGILKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAK 606

[Close]

BLAST of Pay0001415 vs. TAIR 10
Match: AT2G47610.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-12
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 24  KRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 72
           +R+K I KQRLK+PP+ NQFTKT DKNLAT+LFK+LLKYR EDK+ K+
Sbjct: 56  QRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKK 103

[Close]

BLAST of Pay0001415 vs. TAIR 10
Match: AT3G62870.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-12
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 24  KRKKGIHKQRLKIPPSSNQFTKTFDKNLATNLFKMLLKYRAEDKSQKR 72
           +R+K I KQRLK+PP+ NQFTKT DKNLAT+LFK+LLKYR EDK+ K+
Sbjct: 55  QRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAKK 102

The following BLAST results are available for this feature:

BLAST of Pay0001415 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P35685	1.3e-11	70.83	60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-1 ...	[more]
P0DKK7	1.3e-11	70.83	60S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-2 ...	[more]
P49692	3.0e-11	70.83	60S ribosomal protein L7a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL7AA PE=2 SV=2	[more]
Q9LZH9	3.0e-11	70.83	60S ribosomal protein L7a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7AB PE=1 SV=1	[more]
Q54ZD1	1.7e-06	52.94	60S ribosomal protein L7a OS=Dictyostelium discoideum OX=44689 GN=rpl7a PE=1 SV=...	[more]

BLAST of Pay0001415 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CM74	7.3e-53	99.07	60S ribosomal protein L7a OS=Cucumis melo OX=3656 GN=LOC103502565 PE=3 SV=1	[more]
A0A5A7VJ69	8.6e-38	98.75	60S ribosomal protein L7a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A059CYF1	1.9e-13	54.95	60S ribosomal protein L7a OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B00159 PE=3 ...	[more]
A0A5A7VB90	1.4e-11	86.96	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3DZF5	1.4e-11	86.96	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Pay0001415 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464759.1	1.5e-52	99.07	PREDICTED: uncharacterized protein LOC103502565 [Cucumis melo]	[more]
KAA0065509.1	1.8e-37	98.75	60S ribosomal protein L7a-2-like isoform X2 [Cucumis melo var. makuwa] >TYK08749...	[more]
KCW83216.1	4.0e-13	54.95	hypothetical protein EUGRSUZ_B00159 [Eucalyptus grandis]	[more]
XP_038875632.1	2.9e-11	83.33	60S ribosomal protein L7a-2-like [Benincasa hispida]	[more]
TYK29257.1	2.9e-11	86.96	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0001415 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47610.1	2.1e-12	70.83	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G62870.1	2.1e-12	70.83	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001921	Ribosomal protein L7A/L8	PRINTS	PR00882	RIBOSOMALL7A	coord: 33..52 score: 60.91 coord: 57..70 score: 51.95
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 21..96 e-value: 3.0E-12 score: 48.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0001415.1	Pay0001415.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003723	RNA binding