Pay0000875 (gene) Melon (Payzawat) v1

Overview


Name	Pay0000875
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol polyprotein
Location	chr01: 10296188 .. 10296584 (+)
RNA-Seq Expression	Pay0000875
Synteny	Pay0000875

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCATATCTCAACCGACCATTCCGCTTTGAAGGAGCTCATTTCAAGGGCTGGAAACAAAAGATGTTCTTCTTAACCTTGAAGAAAGCTACCGCCACTTGCACTACTAAAAAATCGACAATTCCAACTAAAAATTCAACTAAGGAGGAGATCGGGAGTTGTGATGCATGGACAGAGTCAGATTTCATATGTAATAATTTAATTCTGAATGGACTTATTGATGAGTTTTATGATTACTACAGTACCATGTCCCCCGCGAAAGAAGTTTGGGATGCATTGCAAAAGAAGTACGACACAGAAGAGGCCGAATCCAAAAAGTATGCAGTAAACCAATATATGAGCTTTATTATTGATATGTTACCTTCACCGCTGAAGGATTTTAAGAATACTCTAA

mRNA sequence

ATGACCTCATATCTCAACCGACCATTCCGCTTTGAAGGAGCTCATTTCAAGGGCTGGAAACAAAAGATGTTCTTCTTAACCTTGAAGAAAGCTACCGCCACTTGCACTACTAAAAAATCGACAATTCCAACTAAAAATTCAACTAAGGAGGAGATCGGGAGTTGTGATGCATGGACAGAGTCAGATTTCATATGTAATAATTTAATTCTGAATGGACTTATTGATGAGTTTTATGATTACTACAGTACCATGTCCCCCGCGAAAGAAGTTTGGGATGCATTGCAAAAGAAGTACGACACAGAAGAGGCCGAATCCAAAAAGATTTTAAGAATACTCTAA

Coding sequence (CDS)

ATGACCTCATATCTCAACCGACCATTCCGCTTTGAAGGAGCTCATTTCAAGGGCTGGAAACAAAAGATGTTCTTCTTAACCTTGAAGAAAGCTACCGCCACTTGCACTACTAAAAAATCGACAATTCCAACTAAAAATTCAACTAAGGAGGAGATCGGGAGTTGTGATGCATGGACAGAGTCAGATTTCATATGTAATAATTTAATTCTGAATGGACTTATTGATGAGTTTTATGATTACTACAGTACCATGTCCCCCGCGAAAGAAGTTTGGGATGCATTGCAAAAGAAGTACGACACAGAAGAGGCCGAATCCAAAAAGATTTTAAGAATACTCTAA

Protein sequence

MTSYLNRPFRFEGAHFKGWKQKMFFLTLKKATATCTTKKSTIPTKNSTKEEIGSCDAWTESDFICNNLILNGLIDEFYDYYSTMSPAKEVWDALQKKYDTEEAESKKILRIL

Homology

[Close]

BLAST of Pay0000875 vs. ExPASy TrEMBL
Match: A0A5A7U031 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00670 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.9e-51
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MTSYLNRPFRFEGAHFKGWKQKMFFLTLKKATATCTTKKSTIPTKNSTKEEIGSCDAWTE 60
           MTSYLNRPFRFEGAHFKGWKQKMFFLTLKKA ATCTTKK+TIPT+NSTKEEIGSCDAWTE
Sbjct: 1   MTSYLNRPFRFEGAHFKGWKQKMFFLTLKKAIATCTTKKTTIPTENSTKEEIGSCDAWTE 60

Query: 61  SDFICNNLILNGLIDEFYDYYSTMSPAKEVWDALQKKYDTEEAESKK 108
           SDFICNNLI NGLIDE YDYYSTMSPAKEVWDALQKKY+TEEAESKK
Sbjct: 61  SDFICNNLIPNGLIDELYDYYSTMSPAKEVWDALQKKYNTEEAESKK 107

[Close]

BLAST of Pay0000875 vs. ExPASy TrEMBL
Match: A0A5A7UA92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00260 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.1e-35
Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1   MTSYLNRPFRFEGAHFKGWKQKM-FFLTLKKATATCTTKKSTIPTKNSTKEEIGSCDAWT 60
           M+S LNRPFRFEGAHFK WKQKM FFLTLKK    CTT+K  +  K+ TKE++ +   WT
Sbjct: 6   MSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPKVSEKDPTKEQLKNLTTWT 65

Query: 61  ESDFICNNLILNGLIDEFYDYYSTMSPAKEVWDALQKKYDTEEAESKK 108
           E+DFIC NLILNGL DE YDYYSTM+ AK+VW+ALQKKYDTEEA SKK
Sbjct: 66  ETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKK 113

[Close]

BLAST of Pay0000875 vs. ExPASy TrEMBL
Match: A0A5D3CEV3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001990 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.3e-35
Identity = 77/108 (71.30%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MTSYLNRPFRFEGAHFKGWKQKM-FFLTLKKATATCTTKKSTIPTKNSTKEEIGSCDAWT 60
           M+S  NRPFRFEGA+FK WKQKM FFLTLKK T  CTT+KS +  K+ T+E++ +   WT
Sbjct: 10  MSSDFNRPFRFEGAYFKRWKQKMLFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWT 69

Query: 61  ESDFICNNLILNGLIDEFYDYYSTMSPAKEVWDALQKKYDTEEAESKK 108
           E+DFIC NLILNGL DE YDYYSTM+ AKEVWDALQKKYDTEEA SKK
Sbjct: 70  ETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKK 117

[Close]

BLAST of Pay0000875 vs. ExPASy TrEMBL
Match: A0A5D3BEH3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold939G00100 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.5e-34
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MTSYLNRPFRFEGAHFKGWKQKM-FFLTLKKATATCTTKKSTIPTKNSTKEEIGSCDAWT 60
           M+S LNRPFRFEGAHFK WKQKM FFLTLKK    CTT+K  +  K+ T+E++ +   WT
Sbjct: 10  MSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKLKVSEKDPTEEQLKNLATWT 69

Query: 61  ESDFICNNLILNGLIDEFYDYYSTMSPAKEVWDALQKKYDTEEAESKK 108
           E+DFIC NLILNGL +E YDYYSTM+  KEVWDALQKKYDTEEA SKK
Sbjct: 70  ETDFICKNLILNGLTNELYDYYSTMTTTKEVWDALQKKYDTEEARSKK 117

[Close]

BLAST of Pay0000875 vs. ExPASy TrEMBL
Match: A0A5D3BDS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00230 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.5e-34
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MTSYLNRPFRFEGAHFKGWKQKM-FFLTLKKATATCTTKKSTIPTKNSTKEEIGSCDAWT 60
           M+S LNRPFRFEGAHFK WKQKM FFLTLKK    CT +K  +  K+ TKE++ +   WT
Sbjct: 6   MSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTIEKPKVSEKDPTKEQLKNLTTWT 65

Query: 61  ESDFICNNLILNGLIDEFYDYYSTMSPAKEVWDALQKKYDTEEAESKK 108
           E+DFIC NLILNGL DE YDYYSTM+ AK+VW+ALQKKYDTEEA SKK
Sbjct: 66  ETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKK 113

[Close]

BLAST of Pay0000875 vs. NCBI nr
Match: KAA0048760.1 (pol polyprotein [Cucumis melo var. makuwa] >TYK31573.1 pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MTSYLNRPFRFEGAHFKGWKQKMFFLTLKKATATCTTKKSTIPTKNSTKEEIGSCDAWTE 60
           MTSYLNRPFRFEGAHFKGWKQKMFFLTLKKA ATCTTKK+TIPT+NSTKEEIGSCDAWTE
Sbjct: 1   MTSYLNRPFRFEGAHFKGWKQKMFFLTLKKAIATCTTKKTTIPTENSTKEEIGSCDAWTE 60

Query: 61  SDFICNNLILNGLIDEFYDYYSTMSPAKEVWDALQKKYDTEEAESKK 108
           SDFICNNLI NGLIDE YDYYSTMSPAKEVWDALQKKY+TEEAESKK
Sbjct: 61  SDFICNNLIPNGLIDELYDYYSTMSPAKEVWDALQKKYNTEEAESKK 107

[Close]

BLAST of Pay0000875 vs. NCBI nr
Match: KAA0050409.1 (hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.5e-34
Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1   MTSYLNRPFRFEGAHFKGWKQKM-FFLTLKKATATCTTKKSTIPTKNSTKEEIGSCDAWT 60
           M+S LNRPFRFEGAHFK WKQKM FFLTLKK    CTT+K  +  K+ TKE++ +   WT
Sbjct: 6   MSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPKVSEKDPTKEQLKNLTTWT 65

Query: 61  ESDFICNNLILNGLIDEFYDYYSTMSPAKEVWDALQKKYDTEEAESKK 108
           E+DFIC NLILNGL DE YDYYSTM+ AK+VW+ALQKKYDTEEA SKK
Sbjct: 66  ETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKK 113

[Close]

BLAST of Pay0000875 vs. NCBI nr
Match: KAA0055814.1 (hypothetical protein E6C27_scaffold181G002040 [Cucumis melo var. makuwa] >TYK10065.1 hypothetical protein E5676_scaffold16G001990 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-34
Identity = 77/108 (71.30%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MTSYLNRPFRFEGAHFKGWKQKM-FFLTLKKATATCTTKKSTIPTKNSTKEEIGSCDAWT 60
           M+S  NRPFRFEGA+FK WKQKM FFLTLKK T  CTT+KS +  K+ T+E++ +   WT
Sbjct: 10  MSSDFNRPFRFEGAYFKRWKQKMLFFLTLKKVTTACTTEKSKVLEKDPTEEQLKNLVTWT 69

Query: 61  ESDFICNNLILNGLIDEFYDYYSTMSPAKEVWDALQKKYDTEEAESKK 108
           E+DFIC NLILNGL DE YDYYSTM+ AKEVWDALQKKYDTEEA SKK
Sbjct: 70  ETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKK 117

[Close]

BLAST of Pay0000875 vs. NCBI nr
Match: TYJ98000.1 (hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 7.3e-34
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MTSYLNRPFRFEGAHFKGWKQKM-FFLTLKKATATCTTKKSTIPTKNSTKEEIGSCDAWT 60
           M+S LNRPFRFEGAHFK WKQKM FFLTLKK    CT +K  +  K+ TKE++ +   WT
Sbjct: 6   MSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTIEKPKVSEKDPTKEQLKNLTTWT 65

Query: 61  ESDFICNNLILNGLIDEFYDYYSTMSPAKEVWDALQKKYDTEEAESKK 108
           E+DFIC NLILNGL DE YDYYSTM+ AK+VW+ALQKKYDTEEA SKK
Sbjct: 66  ETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKK 113

[Close]

BLAST of Pay0000875 vs. NCBI nr
Match: KAA0048414.1 (uncharacterized protein E6C27_scaffold264G001400 [Cucumis melo var. makuwa] >TYJ97436.1 uncharacterized protein E5676_scaffold939G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 7.3e-34
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MTSYLNRPFRFEGAHFKGWKQKM-FFLTLKKATATCTTKKSTIPTKNSTKEEIGSCDAWT 60
           M+S LNRPFRFEGAHFK WKQKM FFLTLKK    CTT+K  +  K+ T+E++ +   WT
Sbjct: 10  MSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKLKVSEKDPTEEQLKNLATWT 69

Query: 61  ESDFICNNLILNGLIDEFYDYYSTMSPAKEVWDALQKKYDTEEAESKK 108
           E+DFIC NLILNGL +E YDYYSTM+  KEVWDALQKKYDTEEA SKK
Sbjct: 70  ETDFICKNLILNGLTNELYDYYSTMTTTKEVWDALQKKYDTEEARSKK 117

[Close]

BLAST of Pay0000875 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 44.3 bits (103), Expect = 7.6e-05
Identity = 33/107 (30.84%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 10  RFEGAHFKGWKQKM-FFLTLKKATATCTTKKSTIPTK---NSTKEEIGSCDA----WTES 69
           RF+G  +  W  +M  FL   K T   +    +I +     +   EI   DA    W   
Sbjct: 197 RFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKWLRD 256

Query: 70  DFICNNLILNGLIDEFYDYYS-TMSPAKEVWDALQKKYDTEEAESKK 108
           D++C   ++N L D  Y  YS     AKE+WD L+  Y  +E++SK+
Sbjct: 257 DYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKR 303

The following BLAST results are available for this feature:

BLAST of Pay0000875 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0000875 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U031	1.9e-51	94.39	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G0067...	[more]
A0A5A7UA92	7.1e-35	70.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CEV3	9.3e-35	71.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BEH3	3.5e-34	69.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDS3	3.5e-34	69.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Pay0000875 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048760.1	3.8e-51	94.39	pol polyprotein [Cucumis melo var. makuwa] >TYK31573.1 pol polyprotein [Cucumis ...	[more]
KAA0050409.1	1.5e-34	70.37	hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]	[more]
KAA0055814.1	1.9e-34	71.30	hypothetical protein E6C27_scaffold181G002040 [Cucumis melo var. makuwa] >TYK100...	[more]
TYJ98000.1	7.3e-34	69.44	hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]	[more]
KAA0048414.1	7.3e-34	69.44	uncharacterized protein E6C27_scaffold264G001400 [Cucumis melo var. makuwa] >TYJ...	[more]

BLAST of Pay0000875 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	7.6e-05	30.84	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47592:SF11	SUBFAMILY NOT NAMED	coord: 9..108
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 9..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0000875.1	Pay0000875.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding