Pay0000680 (gene) Melon (Payzawat) v1

Overview
NamePay0000680
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionProtein ROOT HAIR DEFECTIVE 3 homolog
Locationchr11: 24121238 .. 24122653 (+)
RNA-Seq ExpressionPay0000680
SyntenyPay0000680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTTTTAAAGGGAGGTAAATAATTCTCATCTCCTGATGTCTTTGGTTTTTGTAGATAAGGAATAATCCTTCTATCTTTAGTTTATTTGGGCTCTGTGGCTGAAGAGTGAAAAATTGATGTCATTTTCTAGGTCGTAAACAACTAAAGGTATATGGTTGGCTAGATGTGCCGATATCGAACCTTGTACACTTGTGATGGATTTGGAAGGAACTGATGAAAGAAAGCGAGGAGAGGTGCACTCTTATGCCCTTTTTGGTTTTCATGTGTTTCTTTTGCTTGTAATTTCGTTTATTTTTGCCTTTTATTACTATTTATTTATTTATTTATTCCACAAATATGTTTGTCAATGTTTTAAATTCAGTATCATTCCATGCTTCTTTTTGCAGATACACGTATGTGTGTGTATCTAAGGATATGTATGTGTGTATGTATGTATGTATGTTCATGTATGTATTTATGCGAACATACTTATTTTTTTTGTATCACAACAAGCTATGATGTATACTTTGATTGTTTCTTAATTTGCTTTTGTCACATTCTTTTTAAGAACGACACTACATTTGAGAAGCAAAGTGCCCTCTTTGCGCTTGTCGTGTCAGATATAGTGCTAATAAATATGTGAGTGCCATTAGTTTTGTTTTTCAAACATTTATTTTATCTTATAACATGCTTTTCCGTTTGATTTTCTTCTAAAATTTATTGTTTCCACACTATCTTGTTTAAGAAGTTGTTATAATTTAATTTAGGTGGTATCACGATATTGGCCGTGAGCAGGCTGCAATTAAGCCTTTCCTCAAAACTGTATTTCAGGTATTCCCTTTAATTTGGTTGGGGGTCATGGTGTATCTTTTATAGTATTAATTTAATAAATTTTGGTTGCTGTTGTATGCAGGTCATGATGAGATTATTTAGTCCACGTAAAACAACACTAATGTTTGTCATACGTGATAAAACAAGGGTCTGTTAATATTTCCTGGGTAGTTTATATCTTGAGTTGTTGTAGAAGAACCATATGTTGCAAGCTTCTAACTTTTCTAATTTTCTTTGTTGCTTTTGTTAATTTTTTCTATATGTAGACACCATTGAAAAATTTAAAGCCTGTTCTTAGAGAGGATGTAAAGAAGGTAAATTATTGGTGCTCATAAATATTGTAATGCTTAGAAAGTGCTATTTTGTTCTTATTTGAATTCCTCTACATTTGTTATGTAGTGGTTAGAGGGTAGTGTTTCTGTAGATAATTGTTCTTTACATATCTTGTCTATTATTATGTTGGAAATTAGGTTGCAAATTTGAGACAGGGATTCTTCCATTCTAATTCCCCAGGAGGACTGGTTGAGGTTAGAAGAAGAAGTACAGTCCGATCCAGGTCAAGGTTTTGGAAAGAAGCTAAGTTTGACCATCAATACATGA

mRNA sequence

ATGGATGCTTTTAAAGGGAGGTGGTATCACGATATTGGCCGTGAGCAGGCTGCAATTAAGCCTTTCCTCAAAACTGTATTTCAGACACCATTGAAAAATTTAAAGCCTGTTCTTAGAGAGGATGTAAAGAAGGAGGACTGGTTGAGGTTAGAAGAAGAAGTACAGTCCGATCCAGGTCAAGGTTTTGGAAAGAAGCTAAGTTTGACCATCAATACATGA

Coding sequence (CDS)

ATGGATGCTTTTAAAGGGAGGTGGTATCACGATATTGGCCGTGAGCAGGCTGCAATTAAGCCTTTCCTCAAAACTGTATTTCAGACACCATTGAAAAATTTAAAGCCTGTTCTTAGAGAGGATGTAAAGAAGGAGGACTGGTTGAGGTTAGAAGAAGAAGTACAGTCCGATCCAGGTCAAGGTTTTGGAAAGAAGCTAAGTTTGACCATCAATACATGA

Protein sequence

MDAFKGRWYHDIGREQAAIKPFLKTVFQTPLKNLKPVLREDVKKEDWLRLEEEVQSDPGQGFGKKLSLTINT
Homology
[Close]
BLAST of Pay0000680 vs. ExPASy Swiss-Prot
Match: Q9SSN0 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g72960 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-07
Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQ----------------------TPLKNLKPVLREDVKK 45
           W HDIGREQAA KP LKTVFQ                      TPL+NL+PVLRED++K
Sbjct: 135 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLREDIQK 193

[Close]
BLAST of Pay0000680 vs. ExPASy Swiss-Prot
Match: P93042 (Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-07
Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQ----------------------TPLKNLKPVLREDVKK 45
           W HDIGREQAA KP LKTVFQ                      TPL+NL+PVLRED++K
Sbjct: 130 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 188

[Close]
BLAST of Pay0000680 vs. ExPASy Swiss-Prot
Match: Q0JLS6 (Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.6e-07
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQ----------------------TPLKNLKPVLREDVKK 45
           W HDIGREQAA KP LKTVFQ                      TPL+NL+P+LRED++K
Sbjct: 130 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPLENLEPILREDIQK 188

[Close]
BLAST of Pay0000680 vs. ExPASy Swiss-Prot
Match: Q2QMH2 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0604600 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.5e-06
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQ----------------------TPLKNLKPVLREDVKK 45
           W HDIGREQAA KP LKTVFQ                      TPL++L+PVLRED++K
Sbjct: 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLEHLEPVLREDIQK 191

[Close]
BLAST of Pay0000680 vs. ExPASy Swiss-Prot
Match: Q9FKE9 (Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g45160 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.0e-04
Identity = 26/59 (44.07%), Postives = 31/59 (52.54%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQ----------------------TPLKNLKPVLREDVKK 45
           W HDIGREQAA KP LKTVFQ                      TP++ L+  LRED++K
Sbjct: 133 WCHDIGREQAANKPLLKTVFQVMLRLFSPRKTTLLFVIRDKTKTPIELLERALREDIQK 191

[Close]
BLAST of Pay0000680 vs. ExPASy TrEMBL
Match: K3ZDP1 (GB1/RHD3-type G domain-containing protein OS=Setaria italica OX=4555 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 43/84 (51.19%), Postives = 51/84 (60.71%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQTPLKNLKPVLREDVKK--------------------EDW 67
           W HDIGREQAA KP LKTVFQTPL++L+PVLRED++K                     +W
Sbjct: 137 WCHDIGREQAANKPLLKTVFQTPLEHLEPVLREDIQKIWNSVAKPEAHKDTPISEFFNEW 196

Query: 68  LRLEEEVQSDPGQGFGKKLSLTIN 72
           L LE  VQS P  GFGKKL   ++
Sbjct: 197 LDLESAVQSGPVPGFGKKLGYIVD 220

[Close]
BLAST of Pay0000680 vs. ExPASy TrEMBL
Match: E5GCA9 (Protein SEY1 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.2e-12
Identity = 55/130 (42.31%), Postives = 58/130 (44.62%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQ----------------------TPLKNLKPVLREDVKK- 67
           W HDIGREQAA KP LKTVFQ                      TPL+NL+PVLREDV+K 
Sbjct: 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDVQKI 192

Query: 68  ------------------------------------------EDWLRLEEEVQSDPGQGF 73
                                                     EDWLRLEEEVQS P QGF
Sbjct: 193 WDSVPKPSAHKDTPLSEFFNVMVATVRCEEIGNEKFAWFASNEDWLRLEEEVQSGPVQGF 252

[Close]
BLAST of Pay0000680 vs. ExPASy TrEMBL
Match: A0A654ENI9 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS6327 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.6e-09
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 7  RWYHDIGREQAAIKPFLKTVFQTPLKNLKPVLREDVKK 45
          RW HDIGREQAA KP LKTVFQTPL+NL+PVLRED++K
Sbjct: 37 RWCHDIGREQAANKPLLKTVFQTPLENLEPVLREDIQK 74

[Close]
BLAST of Pay0000680 vs. ExPASy TrEMBL
Match: A0A5S9WTV6 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=C24_LOCUS6217 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.6e-09
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 7  RWYHDIGREQAAIKPFLKTVFQTPLKNLKPVLREDVKK 45
          RW HDIGREQAA KP LKTVFQTPL+NL+PVLRED++K
Sbjct: 37 RWCHDIGREQAANKPLLKTVFQTPLENLEPVLREDIQK 74

[Close]
BLAST of Pay0000680 vs. ExPASy TrEMBL
Match: A0A103XW38 (Root hair defective 3 GTP-binding (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_023834 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQTPLKNLKPVLREDVKK 45
           W HDIGREQAA KP LKTVFQTPL+NL+PVLREDV+K
Sbjct: 220 WCHDIGREQAANKPLLKTVFQTPLENLEPVLREDVQK 256

[Close]
BLAST of Pay0000680 vs. NCBI nr
Match: ADN34108.1 (protein SEY1 [Cucumis melo subsp. melo])

HSP 1 Score: 80.1 bits (196), Expect = 8.6e-12
Identity = 55/130 (42.31%), Postives = 58/130 (44.62%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQ----------------------TPLKNLKPVLREDVKK- 67
           W HDIGREQAA KP LKTVFQ                      TPL+NL+PVLREDV+K 
Sbjct: 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDVQKI 192

Query: 68  ------------------------------------------EDWLRLEEEVQSDPGQGF 73
                                                     EDWLRLEEEVQS P QGF
Sbjct: 193 WDSVPKPSAHKDTPLSEFFNVMVATVRCEEIGNEKFAWFASNEDWLRLEEEVQSGPVQGF 252

[Close]
BLAST of Pay0000680 vs. NCBI nr
Match: VYS50857.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-08
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 7  RWYHDIGREQAAIKPFLKTVFQTPLKNLKPVLREDVKK 45
          RW HDIGREQAA KP LKTVFQTPL+NL+PVLRED++K
Sbjct: 37 RWCHDIGREQAANKPLLKTVFQTPLENLEPVLREDIQK 74

[Close]
BLAST of Pay0000680 vs. NCBI nr
Match: CAA0332036.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-08
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 7  RWYHDIGREQAAIKPFLKTVFQTPLKNLKPVLREDVKK 45
          RW HDIGREQAA KP LKTVFQTPL+NL+PVLRED++K
Sbjct: 37 RWCHDIGREQAANKPLLKTVFQTPLENLEPVLREDIQK 74

[Close]
BLAST of Pay0000680 vs. NCBI nr
Match: KVH97948.1 (Root hair defective 3 GTP-binding, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-08
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQTPLKNLKPVLREDVKK 45
           W HDIGREQAA KP LKTVFQTPL+NL+PVLREDV+K
Sbjct: 220 WCHDIGREQAANKPLLKTVFQTPLENLEPVLREDVQK 256

[Close]
BLAST of Pay0000680 vs. NCBI nr
Match: RXH67385.1 (hypothetical protein DVH24_027532 [Malus domestica])

HSP 1 Score: 67.0 bits (162), Expect = 7.5e-08
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQTPLKNLKPVLREDVKK 45
           W HDIGREQAA KP LKTVFQTPL+NL+PVLRED++K
Sbjct: 92  WCHDIGREQAANKPLLKTVFQTPLENLEPVLREDIQK 128

[Close]
BLAST of Pay0000680 vs. TAIR 10
Match: AT1G72960.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-08
Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQ----------------------TPLKNLKPVLREDVKK 45
           W HDIGREQAA KP LKTVFQ                      TPL+NL+PVLRED++K
Sbjct: 135 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLREDIQK 193

[Close]
BLAST of Pay0000680 vs. TAIR 10
Match: AT3G13870.2 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-08
Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQ----------------------TPLKNLKPVLREDVKK 45
           W HDIGREQAA KP LKTVFQ                      TPL+NL+PVLRED++K
Sbjct: 66  WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 124

[Close]
BLAST of Pay0000680 vs. TAIR 10
Match: AT3G13870.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-08
Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQ----------------------TPLKNLKPVLREDVKK 45
           W HDIGREQAA KP LKTVFQ                      TPL+NL+PVLRED++K
Sbjct: 130 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 188

[Close]
BLAST of Pay0000680 vs. TAIR 10
Match: AT5G45160.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 45.1 bits (105), Expect = 2.9e-05
Identity = 26/59 (44.07%), Postives = 31/59 (52.54%), Query Frame = 0 

Query: 8   WYHDIGREQAAIKPFLKTVFQ----------------------TPLKNLKPVLREDVKK 45
           W HDIGREQAA KP LKTVFQ                      TP++ L+  LRED++K
Sbjct: 133 WCHDIGREQAANKPLLKTVFQVMLRLFSPRKTTLLFVIRDKTKTPIELLERALREDIQK 191

The following BLAST results are available for this feature:
BLAST of Pay0000680 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SSN06.6e-0750.85Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g7... [more]
P930426.6e-0750.85Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1[more]
Q0JLS68.6e-0749.15Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 P... [more]
Q2QMH22.5e-0649.15Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947... [more]
Q9FKE94.0e-0444.07Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g4... [more]
BLAST of Pay0000680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
K3ZDP11.9e-1251.19GB1/RHD3-type G domain-containing protein OS=Setaria italica OX=4555 PE=3 SV=1[more]
E5GCA94.2e-1242.31Protein SEY1 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
A0A654ENI99.6e-0981.58Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS6327 PE=4 SV... [more]
A0A5S9WTV69.6e-0981.58Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=C24_LOCUS6217 PE=4 SV... [more]
A0A103XW382.8e-0883.78Root hair defective 3 GTP-binding (Fragment) OS=Cynara cardunculus var. scolymus... [more]
BLAST of Pay0000680 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34108.18.6e-1242.31protein SEY1 [Cucumis melo subsp. melo][more]
VYS50857.12.0e-0881.58unnamed protein product [Arabidopsis thaliana][more]
CAA0332036.12.0e-0881.58unnamed protein product [Arabidopsis thaliana][more]
KVH97948.15.8e-0883.78Root hair defective 3 GTP-binding, partial [Cynara cardunculus var. scolymus][more]
RXH67385.17.5e-0881.08hypothetical protein DVH24_027532 [Malus domestica][more]
BLAST of Pay0000680 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G72960.14.7e-0850.85Root hair defective 3 GTP-binding protein (RHD3) [more]
AT3G13870.24.7e-0850.85Root hair defective 3 GTP-binding protein (RHD3) [more]
AT3G13870.14.7e-0850.85Root hair defective 3 GTP-binding protein (RHD3) [more]
AT5G45160.12.9e-0544.07Root hair defective 3 GTP-binding protein (RHD3) [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0000680.1Pay0000680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016320 endoplasmic reticulum membrane fusion
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding