PI0029202 (gene) Melon (PI 482460) v1

Overview


Name	PI0029202
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Myelin transcription factor 1-like protein
Location	chr02: 24645021 .. 24645406 (-)
RNA-Seq Expression	PI0029202
Synteny	PI0029202

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGACACCGGCGACGGCGACGGCGACATCCGCCATTTTTGTTCTTCTTTCAGGTTTGTGTTTTGTCGTTTTCAATTCCGATAATTTAATGGGGCGGTGGCTACCAATTCTGGGGTTGTTGGCCGTGGCCGGAGTGGCGTTGATGGCGGCCAGAGCCACGATGGTGGCGTGGATCACGGTGTTGGTGCTATTGGCGTTCGCCGGAAACCGACGGCGAGTCCTGGTCAAACATGGAGAAAGATCACCGCCGATGTAGCCATGTACTTGGCCGCCGTTATGGTTAAAGAAAGAGGGCTTCTTGCTGTTGGTTTCGCCGCCGTCTTCAGCTTCGTCGCCGTCGTTCGTTCGACGGAGATCGATCTACTTTCTTCTTTCTCCGCTTAA

mRNA sequence

ATGTTGACACCGGCGACGGCGACGGCGACATCCGCCATTTTTGTTCTTCTTTCAGGTTTGTGTTTTGTCGTTTTCAATTCCGATAATTTAATGGGGCGGTGGCTACCAATTCTGGGGTTGTTGGCCGTGGCCGGAGTGGCGTTGATGGCGGCCAGAGCCACGATGGTGGCGTGGATCACGGTGTTGGTGCTATTGGCAAAGATCACCGCCGATGTAGCCATGTACTTGGCCGCCGTTATGGTTAAAGAAAGAGGGCTTCTTGCTGTTGGTTTCGCCGCCGTCTTCAGCTTCGTCGCCGTCGTTCGTTCGACGGAGATCGATCTACTTTCTTCTTTCTCCGCTTAA

Coding sequence (CDS)

ATGTTGACACCGGCGACGGCGACGGCGACATCCGCCATTTTTGTTCTTCTTTCAGGTTTGTGTTTTGTCGTTTTCAATTCCGATAATTTAATGGGGCGGTGGCTACCAATTCTGGGGTTGTTGGCCGTGGCCGGAGTGGCGTTGATGGCGGCCAGAGCCACGATGGTGGCGTGGATCACGGTGTTGGTGCTATTGGCAAAGATCACCGCCGATGTAGCCATGTACTTGGCCGCCGTTATGGTTAAAGAAAGAGGGCTTCTTGCTGTTGGTTTCGCCGCCGTCTTCAGCTTCGTCGCCGTCGTTCGTTCGACGGAGATCGATCTACTTTCTTCTTTCTCCGCTTAA

Protein sequence

MLTPATATATSAIFVLLSGLCFVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWITVLVLLAKITADVAMYLAAVMVKERGLLAVGFAAVFSFVAVVRSTEIDLLSSFSA

Homology

[Close]

BLAST of PI0029202 vs. ExPASy TrEMBL
Match: A0A5D3BFC5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001030 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.8e-41
Identity = 108/128 (84.38%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MLTPATATATSAIFVLLSGLCFVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWIT 60
           MLTP TATATSAIFVLLSGLC+VVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWIT
Sbjct: 7   MLTPVTATATSAIFVLLSGLCYVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWIT 66

Query: 61  VLVLLA--------------KITADVAMYLAAVMVKERGLLAVGFAAVFSFVAVVRSTEI 115
           VLVLLA              KITADVAMYLA+VMVKERGLLAV FAA+FSFVAV RSTEI
Sbjct: 67  VLVLLAFAGNRRRVLVKHGRKITADVAMYLASVMVKERGLLAVAFAALFSFVAVARSTEI 126

[Close]

BLAST of PI0029202 vs. ExPASy TrEMBL
Match: A0A0A0LRZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G003500 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.1e-38
Identity = 104/128 (81.25%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1   MLTPATATATSAIFVLLSGLCFVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWIT 60
           MLTP TATATSAIFVLLSGLCF+VFNSDNLMGRWLPILGLLAVA VALMAARATMVAWIT
Sbjct: 1   MLTPTTATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVALMAARATMVAWIT 60

Query: 61  VLVLLA--------------KITADVAMYLAAVMVKERGLLAVGFAAVFSFVAVVRSTEI 115
           VLVLLA              KITADVAMYLA+V+VKERGLLAV FAA+FSF+AV+RSTEI
Sbjct: 61  VLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEI 120

[Close]

BLAST of PI0029202 vs. ExPASy TrEMBL
Match: A0A0A0LNT4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G003480 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.7e-36
Identity = 99/122 (81.15%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 7   ATATSAIFVLLSGLCFVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWITVLVLLA 66
           ATATSAIFVLLSGLCF+VFNSDNLMGRWLPILGLLAVA V LMAARATMVAWITVLVLLA
Sbjct: 2   ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLA 61

Query: 67  --------------KITADVAMYLAAVMVKERGLLAVGFAAVFSFVAVVRSTEIDLLSSF 115
                         KITADVAMYLA+V+VKERGLLAV FAA+FSF+AV+RSTEIDLLSSF
Sbjct: 62  FAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLSSF 121

[Close]

BLAST of PI0029202 vs. ExPASy TrEMBL
Match: A0A6J1KRU7 (uncharacterized protein LOC111498104 OS=Cucurbita maxima OX=3661 GN=LOC111498104 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.6e-26
Identity = 86/125 (68.80%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 1   MLTPAT-ATATSAIFVLLSGLCFVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWI 60
           M TPAT A   S IF+LLSG C VV N D LMGRW+PI+GLL VAGVA++AARATMVAWI
Sbjct: 1   MSTPATEAVLLSGIFLLLSGSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWI 60

Query: 61  TVLVLLA--------------KITADVAMYLAAVMVKERGLLAVGFAAVFSFVAVVRSTE 111
           TVLVLLA              +ITADVAMYL+AV+VKERGL+AV FAAV SFVAVVRS E
Sbjct: 61  TVLVLLAFAGNRRRVLVKQGRQITADVAMYLSAVLVKERGLVAVAFAAVLSFVAVVRSME 120

[Close]

BLAST of PI0029202 vs. ExPASy TrEMBL
Match: A0A6J1F5J3 (uncharacterized protein LOC111441029 OS=Cucurbita moschata OX=3662 GN=LOC111441029 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 85/125 (68.00%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 1   MLTPAT-ATATSAIFVLLSGLCFVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWI 60
           M TP T A   S IF+LLSG C VV N D LMGRW+PI+GLL VAGVA++AARATMVAWI
Sbjct: 1   MSTPVTEAVLLSGIFLLLSGSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWI 60

Query: 61  TVLVLLA--------------KITADVAMYLAAVMVKERGLLAVGFAAVFSFVAVVRSTE 111
           TVLVLLA              +ITADVAMYL AV+VKERGL+AVGFAAV S VAVVRS E
Sbjct: 61  TVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVGFAAVLSLVAVVRSME 120

[Close]

BLAST of PI0029202 vs. NCBI nr
Match: KAA0057816.1 (hypothetical protein E6C27_scaffold274G001000 [Cucumis melo var. makuwa] >TYJ98500.1 hypothetical protein E5676_scaffold350G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 3.7e-41
Identity = 108/128 (84.38%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MLTPATATATSAIFVLLSGLCFVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWIT 60
           MLTP TATATSAIFVLLSGLC+VVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWIT
Sbjct: 7   MLTPVTATATSAIFVLLSGLCYVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWIT 66

Query: 61  VLVLLA--------------KITADVAMYLAAVMVKERGLLAVGFAAVFSFVAVVRSTEI 115
           VLVLLA              KITADVAMYLA+VMVKERGLLAV FAA+FSFVAV RSTEI
Sbjct: 67  VLVLLAFAGNRRRVLVKHGRKITADVAMYLASVMVKERGLLAVAFAALFSFVAVARSTEI 126

[Close]

BLAST of PI0029202 vs. NCBI nr
Match: KGN63537.2 (hypothetical protein Csa_013462 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 2.9e-38
Identity = 103/128 (80.47%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MLTPATATATSAIFVLLSGLCFVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWIT 60
           MLTP  ATATSAIFVLLSGLCF+VFNSDNLMGRWLPILGLLAVA V LMAARATMVAWIT
Sbjct: 177 MLTPTMATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWIT 236

Query: 61  VLVLLA--------------KITADVAMYLAAVMVKERGLLAVGFAAVFSFVAVVRSTEI 115
           VLVLLA              KITADVAMYLA+V+VKERGLLAV FAA+FSF+AV+RSTEI
Sbjct: 237 VLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEI 296

[Close]

BLAST of PI0029202 vs. NCBI nr
Match: XP_023004957.1 (uncharacterized protein LOC111498104 [Cucurbita maxima])

HSP 1 Score: 127.5 bits (319), Expect = 7.4e-26
Identity = 86/125 (68.80%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 1   MLTPAT-ATATSAIFVLLSGLCFVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWI 60
           M TPAT A   S IF+LLSG C VV N D LMGRW+PI+GLL VAGVA++AARATMVAWI
Sbjct: 1   MSTPATEAVLLSGIFLLLSGSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWI 60

Query: 61  TVLVLLA--------------KITADVAMYLAAVMVKERGLLAVGFAAVFSFVAVVRSTE 111
           TVLVLLA              +ITADVAMYL+AV+VKERGL+AV FAAV SFVAVVRS E
Sbjct: 61  TVLVLLAFAGNRRRVLVKQGRQITADVAMYLSAVLVKERGLVAVAFAAVLSFVAVVRSME 120

[Close]

BLAST of PI0029202 vs. NCBI nr
Match: XP_022933693.1 (uncharacterized protein LOC111441029 [Cucurbita moschata])

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 85/125 (68.00%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 1   MLTPAT-ATATSAIFVLLSGLCFVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWI 60
           M TP T A   S IF+LLSG C VV N D LMGRW+PI+GLL VAGVA++AARATMVAWI
Sbjct: 1   MSTPVTEAVLLSGIFLLLSGSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWI 60

Query: 61  TVLVLLA--------------KITADVAMYLAAVMVKERGLLAVGFAAVFSFVAVVRSTE 111
           TVLVLLA              +ITADVAMYL AV+VKERGL+AVGFAAV S VAVVRS E
Sbjct: 61  TVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVGFAAVLSLVAVVRSME 120

[Close]

BLAST of PI0029202 vs. NCBI nr
Match: XP_023530771.1 (uncharacterized protein LOC111793221 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 85/125 (68.00%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 1   MLTPAT-ATATSAIFVLLSGLCFVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWI 60
           M TP T A   S IF+LLSG C VV N D LMGRW+PI+GLL VAGVA++AARATMVAWI
Sbjct: 1   MSTPVTEAVLLSGIFLLLSGSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWI 60

Query: 61  TVLVLLA--------------KITADVAMYLAAVMVKERGLLAVGFAAVFSFVAVVRSTE 111
           TVLVLLA              +ITADVAMYL AV+VKERGL+AV FAAV SFVAVVRS E
Sbjct: 61  TVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFVAVVRSME 120

The following BLAST results are available for this feature:

BLAST of PI0029202 vs.


Match Name	E-value	Identity	Description

BLAST of PI0029202 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BFC5	1.8e-41	84.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LRZ2	1.1e-38	81.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G003500 PE=4 SV=1	[more]
A0A0A0LNT4	1.7e-36	81.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G003480 PE=4 SV=1	[more]
A0A6J1KRU7	3.6e-26	68.80	uncharacterized protein LOC111498104 OS=Cucurbita maxima OX=3661 GN=LOC111498104...	[more]
A0A6J1F5J3	1.4e-25	68.00	uncharacterized protein LOC111441029 OS=Cucurbita moschata OX=3662 GN=LOC1114410...	[more]

BLAST of PI0029202 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057816.1	3.7e-41	84.38	hypothetical protein E6C27_scaffold274G001000 [Cucumis melo var. makuwa] >TYJ985...	[more]
KGN63537.2	2.9e-38	80.47	hypothetical protein Csa_013462 [Cucumis sativus]	[more]
XP_023004957.1	7.4e-26	68.80	uncharacterized protein LOC111498104 [Cucurbita maxima]	[more]
XP_022933693.1	2.8e-25	68.00	uncharacterized protein LOC111441029 [Cucurbita moschata]	[more]
XP_023530771.1	2.8e-25	68.00	uncharacterized protein LOC111793221 [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0029202 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34656	PYRROLINE-5-CARBOXYLATE REDUCTASE	coord: 67..102
None	No IPR available	PANTHER	PTHR34656:SF2	TRANSMEMBRANE PROTEIN	coord: 3..66
None	No IPR available	PANTHER	PTHR34656:SF2	TRANSMEMBRANE PROTEIN	coord: 67..102
None	No IPR available	PANTHER	PTHR34656	PYRROLINE-5-CARBOXYLATE REDUCTASE	coord: 3..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0029202.1	PI0029202.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070125	mitochondrial translational elongation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003746	translation elongation factor activity