PI0029141 (gene) Melon (PI 482460) v1

Overview


Name	PI0029141
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr07: 19172083 .. 19172355 (-)
RNA-Seq Expression	PI0029141
Synteny	PI0029141

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTTGGTCCAGGGTATTATGATTCAGGGGCATGTACAGGATATTTTGATTCAAAAGCCGGTCCATCTTCTTCGTACATGGATGCTCGTCCATCAACTTCATACATGCATGGAGACGAACGGGGCTGTGGAGAACATAACGAATATCTATACTATGAAACACCTGCAGAGGTATCAGATTCACAAGAGTACCAACAAGAATCAGAGAATCAATATGAGCAAGAGCCACATAGAATTCAAAGTCGTCGACGACAACTGACTCGAAATTGA

mRNA sequence

ATGGCATTTGGTCCAGGGTATTATGATTCAGGGGCATGTACAGGATATTTTGATTCAAAAGCCGGTCCATCTTCTTCGTACATGGATGCTCGTCCATCAACTTCATACATGCATGGAGACGAACGGGGCTGTGGAGAACATAACGAATATCTATACTATGAAACACCTGCAGAGGTATCAGATTCACAAGAGTACCAACAAGAATCAGAGAATCAATATGAGCAAGAGCCACATAGAATTCAAAGTCGTCGACGACAACTGACTCGAAATTGA

Coding sequence (CDS)

ATGGCATTTGGTCCAGGGTATTATGATTCAGGGGCATGTACAGGATATTTTGATTCAAAAGCCGGTCCATCTTCTTCGTACATGGATGCTCGTCCATCAACTTCATACATGCATGGAGACGAACGGGGCTGTGGAGAACATAACGAATATCTATACTATGAAACACCTGCAGAGGTATCAGATTCACAAGAGTACCAACAAGAATCAGAGAATCAATATGAGCAAGAGCCACATAGAATTCAAAGTCGTCGACGACAACTGACTCGAAATTGA

Protein sequence

MAFGPGYYDSGACTGYFDSKAGPSSSYMDARPSTSYMHGDERGCGEHNEYLYYETPAEVSDSQEYQQESENQYEQEPHRIQSRRRQLTRN

Homology

[Close]

BLAST of PI0029141 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.5e-23
Identity = 61/88 (69.32%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 3   FGPGYYDSGACTGYFDSKAGPSSSYMDARPSTSYMHGDERGCGEHNEYLYYETPAEVSDS 62
           FG GY DS   TGY+D+  GP SSYMD  PS SYMHG  RG GEHNEYLY+E PA+VSD 
Sbjct: 55  FGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDR 114

Query: 63  QEYQQESENQYEQEPHRIQSRRRQLTRN 91
           QEYQQE ENQ ++E HR+QSRRRQ TRN
Sbjct: 115 QEYQQEPENQEDREQHRVQSRRRQPTRN 142

[Close]

BLAST of PI0029141 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 3   FGPGYYDSGACTGYFDSKAGPSSSYMDARPSTSYMHGDERGCGEHNEYLYYETPAEVSDS 62
           F  GY D     GY+D+  GPSSSY+D  PSTSYMHG  RG GEHNEYLY+E PA+VSD 
Sbjct: 114 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSDR 173

Query: 63  QEYQQESENQYEQEPHRIQSRRRQLTRN 91
           QEYQQE ENQ ++E HR+QSRRRQ TRN
Sbjct: 174 QEYQQEPENQEDREQHRVQSRRRQPTRN 201

[Close]

BLAST of PI0029141 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 3   FGPGYYDSGACTGYFDSKAGPSSSYMDARPSTSYMHGDERGCGEHNEYLYYETPAEVSDS 62
           F  GY D     GY+D+  GPSSSY+D  PSTSYMHG  RG GEHNEYLY+E PA+VSD 
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185

Query: 63  QEYQQESENQYEQEPHRIQSRRRQLTRN 91
           QEYQQE ENQ ++E HR+QSRRRQ TRN
Sbjct: 186 QEYQQEPENQEDREQHRVQSRRRQPTRN 213

[Close]

BLAST of PI0029141 vs. ExPASy TrEMBL
Match: A0A5D3BMS3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00070 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 3   FGPGYYDSGACTGYFDSKAGPSSSYMDARPSTSYMHGDERGCGEHNEYLYYETPAEVSDS 62
           FG GY DS   TGY+D+  GPSSSYMD  PSTSYMHG  RG G+HNEYLY+E PA+VSD 
Sbjct: 61  FGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPADVSDR 120

Query: 63  QEYQQESENQYEQEPHRIQSRRRQLTRN 91
           QEYQQE ENQ ++E HR+Q R RQ  RN
Sbjct: 121 QEYQQEPENQEDREQHRVQDRCRQPARN 148

[Close]

BLAST of PI0029141 vs. ExPASy TrEMBL
Match: A0A5A7U3Y0 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00710 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 3  FGPGYYDSGACTGYFDSKAGPSSSYMDARPSTSYMHGDERGCGEHNEYLYYETPAEVSDS 62
          FG GY DS   TGY+D+  GPSSSYMD  PSTSYMHG  RG G+HNEYLY+E PA+VSD 
Sbjct: 7  FGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPADVSDR 66

Query: 63 QEYQQESENQYEQEPHRIQSRRRQLTRN 91
          QEYQQE ENQ ++E HR+Q R RQ  RN
Sbjct: 67 QEYQQEPENQEDREQHRVQDRCRQPARN 94

[Close]

BLAST of PI0029141 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 61/88 (69.32%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 3   FGPGYYDSGACTGYFDSKAGPSSSYMDARPSTSYMHGDERGCGEHNEYLYYETPAEVSDS 62
           FG GY DS   TGY+D+  GP SSYMD  PS SYMHG  RG GEHNEYLY+E PA+VSD 
Sbjct: 55  FGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDR 114

Query: 63  QEYQQESENQYEQEPHRIQSRRRQLTRN 91
           QEYQQE ENQ ++E HR+QSRRRQ TRN
Sbjct: 115 QEYQQEPENQEDREQHRVQSRRRQPTRN 142

[Close]

BLAST of PI0029141 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.6e-21
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 3   FGPGYYDSGACTGYFDSKAGPSSSYMDARPSTSYMHGDERGCGEHNEYLYYETPAEVSDS 62
           F  GY D     GY+D+  GPSSSY+D  PSTSYMHG  RG GEHNEYLY+E PA+VSD 
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185

Query: 63  QEYQQESENQYEQEPHRIQSRRRQLTRN 91
           QEYQQE ENQ ++E HR+QSRRRQ TRN
Sbjct: 186 QEYQQEPENQEDREQHRVQSRRRQPTRN 213

[Close]

BLAST of PI0029141 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.6e-21
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 3   FGPGYYDSGACTGYFDSKAGPSSSYMDARPSTSYMHGDERGCGEHNEYLYYETPAEVSDS 62
           F  GY D     GY+D+  GPSSSY+D  PSTSYMHG  RG GEHNEYLY+E PA+VSD 
Sbjct: 114 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSDR 173

Query: 63  QEYQQESENQYEQEPHRIQSRRRQLTRN 91
           QEYQQE ENQ ++E HR+QSRRRQ TRN
Sbjct: 174 QEYQQEPENQEDREQHRVQSRRRQPTRN 201

[Close]

BLAST of PI0029141 vs. NCBI nr
Match: TYK01111.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-21
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 3   FGPGYYDSGACTGYFDSKAGPSSSYMDARPSTSYMHGDERGCGEHNEYLYYETPAEVSDS 62
           FG GY DS   TGY+D+  GPSSSYMD  PSTSYMHG  RG G+HNEYLY+E PA+VSD 
Sbjct: 61  FGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPADVSDR 120

Query: 63  QEYQQESENQYEQEPHRIQSRRRQLTRN 91
           QEYQQE ENQ ++E HR+Q R RQ  RN
Sbjct: 121 QEYQQEPENQEDREQHRVQDRCRQPARN 148

[Close]

BLAST of PI0029141 vs. NCBI nr
Match: KAA0048355.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-21
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 3  FGPGYYDSGACTGYFDSKAGPSSSYMDARPSTSYMHGDERGCGEHNEYLYYETPAEVSDS 62
          FG GY DS   TGY+D+  GPSSSYMD  PSTSYMHG  RG G+HNEYLY+E PA+VSD 
Sbjct: 7  FGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPADVSDR 66

Query: 63 QEYQQESENQYEQEPHRIQSRRRQLTRN 91
          QEYQQE ENQ ++E HR+Q R RQ  RN
Sbjct: 67 QEYQQEPENQEDREQHRVQDRCRQPARN 94

The following BLAST results are available for this feature:

BLAST of PI0029141 vs.


Match Name	E-value	Identity	Description

BLAST of PI0029141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXX3	6.5e-23	69.32	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3BSG8	1.2e-21	67.05	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V342	1.2e-21	67.05	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BMS3	1.6e-21	67.05	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7U3Y0	1.6e-21	67.05	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of PI0029141 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049532.1	1.4e-22	69.32	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062642.1	2.6e-21	67.05	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK01176.1	2.6e-21	67.05	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK01111.1	3.3e-21	67.05	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0048355.1	3.3e-21	67.05	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of PI0029141 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0029141.1	PI0029141.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048507	meristem development