PI0028964 (gene) Melon (PI 482460) v1

Overview


Name	PI0028964
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Conserved oligomeric Golgi complex subunit 6
Location	chr07: 20013199 .. 20013543 (-)
RNA-Seq Expression	PI0028964
Synteny	PI0028964

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTTCCATAAAAGCTCACAAGCAGGCAAATGCAGCGGATGGACCACGATTGACCGAGATTCAAGACACGTCTCTCCCGTTTCACTTTCGGAGAGCTTGAAAGCTTTCTTTGGGTTTGTTTTGGTAAGTGAGAGTTCCCTTCTTGAGTTTGAGCTATTATAGGTTCCTAAATTGCGAACGGAAGCCTGTATTCAAGTGGCTCGATCACCGTCTGAAGCTTACGAACTTATATATGACAATCATGGATCCAAACAACAGGTACCCAGACCCCAAGTCCCTTGCAAGGCATCCTCCAAACCAGATAAGAACAATTTTGGGAATATAATTATAGAGATTTGA

mRNA sequence

ATGACATATTTCCATAAAAGCTCACAAGCAGGCAAATGCAGCGGATGGACCACGATTGACCGAGATTCAAGACACGTCTCTCCCGTTTCACTTTCGGAGAGCTTGAAAGCTTTCTTTGGGTTTGTTTTGGTTCCTAAATTGCGAACGGAAGCCTGTATTCAAGTGGCTCGATCACCGTCTGAAGCTTACGAACTTATATATGACAATCATGGATCCAAACAACAGGTACCCAGACCCCAAGTCCCTTGCAAGGCATCCTCCAAACCAGATAAGAACAATTTTGGGAATATAATTATAGAGATTTGA

Coding sequence (CDS)

ATGACATATTTCCATAAAAGCTCACAAGCAGGCAAATGCAGCGGATGGACCACGATTGACCGAGATTCAAGACACGTCTCTCCCGTTTCACTTTCGGAGAGCTTGAAAGCTTTCTTTGGGTTTGTTTTGGTTCCTAAATTGCGAACGGAAGCCTGTATTCAAGTGGCTCGATCACCGTCTGAAGCTTACGAACTTATATATGACAATCATGGATCCAAACAACAGGTACCCAGACCCCAAGTCCCTTGCAAGGCATCCTCCAAACCAGATAAGAACAATTTTGGGAATATAATTATAGAGATTTGA

Protein sequence

MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVLVPKLRTEACIQVARSPSEAYELIYDNHGSKQQVPRPQVPCKASSKPDKNNFGNIIIEI

Homology

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BLAST of PI0028964 vs. ExPASy Swiss-Prot
Match: Q6NMI3 (Conserved oligomeric Golgi complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=COG6 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-07
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 22  DSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD 81
           + +  SP  LSE LKAFFG VL             VPKLR+EAC++VA++ +EAYE+IY 
Sbjct: 592 ERQDTSPAMLSECLKAFFGLVLGSEGSLPEFEQIQVPKLRSEACVRVAKTLAEAYEVIY- 651

Query: 82  NHGSKQQVPRPQVPCKASSKPDK 92
              + QQ   P     A   PD+
Sbjct: 652 QAVTDQQNGYPDPKSLARHPPDQ 673

[Close]

BLAST of PI0028964 vs. ExPASy TrEMBL
Match: A0A0A0L353 (Conserved oligomeric Golgi complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_4G358740 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 59/97 (60.82%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 19  IDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYEL 78
           +DRDSRH+SP SLSESLKAFFG VL             VPKLRTEAC+QVARS SEA +L
Sbjct: 1   MDRDSRHISPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKL 60

Query: 79  IYDN-HGSKQQVPRPQVPCKASSKPDKNNFGNIIIEI 102
           IY+       + P P   CKASSKPDK +FGNI IEI
Sbjct: 61  IYNTIMDPNNRYPDP-TACKASSKPDKKDFGNITIEI 96

[Close]

BLAST of PI0028964 vs. ExPASy TrEMBL
Match: A0A0A0L1U3 (Conserved oligomeric Golgi complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_4G358700 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12
Identity = 46/81 (56.79%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 1   MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKL 60
           MTYFHKSS+AG  +    +  + +  SP SLSESLKAFFG  L             VPKL
Sbjct: 586 MTYFHKSSEAGNAADGLRL-AEIQDTSPASLSESLKAFFGLALGSESSLPEFELLQVPKL 645

Query: 61  RTEACIQVARSPSEAYELIYD 69
           R+EACIQVARS +EAYELIYD
Sbjct: 646 RSEACIQVARSLAEAYELIYD 665

[Close]

BLAST of PI0028964 vs. ExPASy TrEMBL
Match: A0A5A7UEV6 (Conserved oligomeric Golgi complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00300 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 1   MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKL 60
           MTYFHKS +AG  +    +  + +  SP SLSESLKAFFG  L             VPKL
Sbjct: 586 MTYFHKSLEAGNAADGLRL-AEIQDTSPASLSESLKAFFGLALGSESSLPEFELLQVPKL 645

Query: 61  RTEACIQVARSPSEAYELIYD 69
           R+EACIQVARS +EAYELIYD
Sbjct: 646 RSEACIQVARSLAEAYELIYD 665

[Close]

BLAST of PI0028964 vs. ExPASy TrEMBL
Match: A0A1S3BAN8 (Conserved oligomeric Golgi complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103487619 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 1   MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKL 60
           MTYFHKS +AG  +    +  + +  SP SLSESLKAFFG  L             VPKL
Sbjct: 586 MTYFHKSLEAGNAADGLRL-AEIQDTSPASLSESLKAFFGLALGSESSLPEFELLQVPKL 645

Query: 61  RTEACIQVARSPSEAYELIYD 69
           R+EACIQVARS +EAYELIYD
Sbjct: 646 RSEACIQVARSLAEAYELIYD 665

[Close]

BLAST of PI0028964 vs. ExPASy TrEMBL
Match: A0A6J1IV23 (Conserved oligomeric Golgi complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111480248 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.5e-11
Identity = 44/81 (54.32%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1   MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKL 60
           MTYFHKSS     +       D++H SP SLSE+LKAFFG VL             VPKL
Sbjct: 586 MTYFHKSSDGLPLA-------DNQHTSPASLSENLKAFFGLVLGSESSLPEFELLQVPKL 645

Query: 61  RTEACIQVARSPSEAYELIYD 69
           R+EACIQVARS +E YELIY+
Sbjct: 646 RSEACIQVARSLAEGYELIYE 659

[Close]

BLAST of PI0028964 vs. NCBI nr
Match: KAE8649614.1 (hypothetical protein Csa_012223 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-19
Identity = 66/115 (57.39%), Postives = 75/115 (65.22%), Query Frame = 0


Query: 1   MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKL 60
           MT F   S  G+C+G   +DRDSRH+SP SLSESLKAFFG VL             VPKL
Sbjct: 52  MTIFSCLSM-GQCNG---MDRDSRHISPASLSESLKAFFGHVLGSESFLPKFELLQVPKL 111

Query: 61  RTEACIQVARSPSEAYELIYDN-HGSKQQVPRPQVPCKASSKPDKNNFGNIIIEI 102
           RTEAC+QVARS SEA +LIY+       + P P   CKASSKPDK +FGNI IEI
Sbjct: 112 RTEACVQVARSLSEADKLIYNTIMDPNNRYPDP-TACKASSKPDKKDFGNITIEI 161

[Close]

BLAST of PI0028964 vs. NCBI nr
Match: XP_038899282.1 (conserved oligomeric Golgi complex subunit 6 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-12
Identity = 47/81 (58.02%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1   MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKL 60
           MTYFHKSS+AG  +    +  + +  SP SLSESLKAFFG VL             VPKL
Sbjct: 586 MTYFHKSSEAGNAADGLRL-AEIQDTSPASLSESLKAFFGLVLGSESSLPEFELLQVPKL 645

Query: 61  RTEACIQVARSPSEAYELIYD 69
           R+EACIQVARS +EAYELIYD
Sbjct: 646 RSEACIQVARSLAEAYELIYD 665

[Close]

BLAST of PI0028964 vs. NCBI nr
Match: XP_004142643.1 (conserved oligomeric Golgi complex subunit 6 [Cucumis sativus] >KGN54532.1 hypothetical protein Csa_012197 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 7.1e-12
Identity = 46/81 (56.79%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 1   MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKL 60
           MTYFHKSS+AG  +    +  + +  SP SLSESLKAFFG  L             VPKL
Sbjct: 586 MTYFHKSSEAGNAADGLRL-AEIQDTSPASLSESLKAFFGLALGSESSLPEFELLQVPKL 645

Query: 61  RTEACIQVARSPSEAYELIYD 69
           R+EACIQVARS +EAYELIYD
Sbjct: 646 RSEACIQVARSLAEAYELIYD 665

[Close]

BLAST of PI0028964 vs. NCBI nr
Match: XP_008444218.2 (PREDICTED: conserved oligomeric Golgi complex subunit 6 [Cucumis melo] >KAA0052235.1 conserved oligomeric Golgi complex subunit 6 [Cucumis melo var. makuwa] >TYK01798.1 conserved oligomeric Golgi complex subunit 6 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-11
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 1   MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKL 60
           MTYFHKS +AG  +    +  + +  SP SLSESLKAFFG  L             VPKL
Sbjct: 586 MTYFHKSLEAGNAADGLRL-AEIQDTSPASLSESLKAFFGLALGSESSLPEFELLQVPKL 645

Query: 61  RTEACIQVARSPSEAYELIYD 69
           R+EACIQVARS +EAYELIYD
Sbjct: 646 RSEACIQVARSLAEAYELIYD 665

[Close]

BLAST of PI0028964 vs. NCBI nr
Match: KAG6608028.1 (Conserved oligomeric Golgi complex subunit 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 4.6e-11
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 1   MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKL 60
           MTYFHKSS     +       D++H SPVSLSE+LKAFFG VL             VPKL
Sbjct: 582 MTYFHKSSDGLPLA-------DNQHTSPVSLSENLKAFFGLVLGSESSLPEFELLQVPKL 641

Query: 61  RTEACIQVARSPSEAYELIYD 69
           R+EACIQVARS +E YELIY+
Sbjct: 642 RSEACIQVARSLAEGYELIYE 655

[Close]

BLAST of PI0028964 vs. TAIR 10
Match: AT1G31780.1 (CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-08
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 22  DSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD 81
           + +  SP  LSE LKAFFG VL             VPKLR+EAC++VA++ +EAYE+IY 
Sbjct: 592 ERQDTSPAMLSECLKAFFGLVLGSEGSLPEFEQIQVPKLRSEACVRVAKTLAEAYEVIY- 651

Query: 82  NHGSKQQVPRPQVPCKASSKPDK 92
              + QQ   P     A   PD+
Sbjct: 652 QAVTDQQNGYPDPKSLARHPPDQ 673

The following BLAST results are available for this feature:

BLAST of PI0028964 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NMI3	3.2e-07	42.17	Conserved oligomeric Golgi complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of PI0028964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L353	1.1e-18	60.82	Conserved oligomeric Golgi complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_4...	[more]
A0A0A0L1U3	3.4e-12	56.79	Conserved oligomeric Golgi complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_4...	[more]
A0A5A7UEV6	1.7e-11	55.56	Conserved oligomeric Golgi complex subunit 6 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BAN8	1.7e-11	55.56	Conserved oligomeric Golgi complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A6J1IV23	6.5e-11	54.32	Conserved oligomeric Golgi complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of PI0028964 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649614.1	2.1e-19	57.39	hypothetical protein Csa_012223 [Cucumis sativus]	[more]
XP_038899282.1	2.4e-12	58.02	conserved oligomeric Golgi complex subunit 6 [Benincasa hispida]	[more]
XP_004142643.1	7.1e-12	56.79	conserved oligomeric Golgi complex subunit 6 [Cucumis sativus] >KGN54532.1 hypot...	[more]
XP_008444218.2	3.5e-11	55.56	PREDICTED: conserved oligomeric Golgi complex subunit 6 [Cucumis melo] >KAA00522...	[more]
KAG6608028.1	4.6e-11	55.56	Conserved oligomeric Golgi complex subunit 6, partial [Cucurbita argyrosperma su...	[more]

BLAST of PI0028964 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31780.1	2.3e-08	42.17	CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR01049...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028964.1	PI0028964.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0005794	Golgi apparatus