PI0028604 (gene) Melon (PI 482460) v1

Overview


Name	PI0028604
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr10: 2921478 .. 2925509 (-)
RNA-Seq Expression	PI0028604
Synteny	PI0028604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATGTTTCTAAGACTATGATAATATGTTTATGGTTTAATACAAAATTTGGATGTGGTATGTTGCATGCTAGACTGAAAGTGACTGTTAATATTCTTATTGGGCTGTGTAAATTCTATGAATATGTTTCGGTGTCCCTATGGAATTACCACCTATGACTAATATGTGTTCCTTCGGGATCACACTTATGACTGATATGTGTTCTTTCTGGATTACACTTATGACTGATATGTGTTCTTTTTGGATCACATCTATGACTGATGTGTTCTTTGGGACCATGTTACAAGATATGCACCGATGCTTGAATCTATATTAATATGTTCACTTAGTGGGCCTAGTAGAGGGCTACTCACCGGATATTTCTAATACTCACCCTATTTTATGTTATGTTTTTCAGGTAAAGGCAAGAACAAATTGGCGAATGACAAGAGGAATCCGTGGCCAAGCCTTTGGGGATTTGACATTGCTTTCGCATATGTTTTTCTAAATTTGTATGTTTTGTTTTAAGAGTCAAACGTTTAAGTTATTTGATTTTTTAATTCAATTATATATTCAATTTATTTGAAATAATCCATGTTTTATGATTTTACTATTCTAGACCTTTGTTTAACAAAAATGTTTTATTTATTTTAATTGATTTTGTAAGAACTATATTTTCAAGCCTATGCATACATGTAGTAGCGTCCTTGATAGTGTCAAAAAGTCCGGTCATTACACAGTTCCTTTTCAAATTAGATTAAAGTTCTTTAGACATGCCTCTTATGCTTGGAAACATTTTTTTGTAGTACAGAGTAGTTTTCAATTTACTTCAGCACCTTTCAGCCAGAACCTTGAGGCTGTTTTGGTGAGTTTTATACATTAGGACTCTATTTAGACCCTTTCAGATTAAGTCTAAGTGCTATATATTCGTCAATTACTATTGGGTTACTCTCTATTCCTAGTTTATACTTTTTTTGAAGTGTTTGGACTGATGTTTAAGGTCACTTTAGGTAAAGTCATTCATTTAAAAAATTGTTAAGGCTCTAAATAAGGTTTTGATCTAAGTTCGTAACTTTGGAATCATGTTTTACAATTTCAGGAGCCTTTAGATTCAATTTTTTTGAAAAGGAAACAACCTCTTTATTAATATATTAATAATTTGACAGAAGCTCATAGTACAAGAGGATACAATGAGCATGTAAACCAAGAATCAGGAGGTGTACCTGGATATCTCAACTAGGTTGACACCTCCTTAGCACCCTCATCATATCCAAATGAGCCAAAATAAACAAAAAAAAATAAATAACAAACATGTAATGTCCAAAAGCAAAAACAAAAACTAACAACCCAAAAGGAGTACAAAGAAATCTAATAAAAAGACTAAACATTCATCTGAAGAAAAGACGACCAAATAGGCTTATATCCCGCACTAAGTGATTCTCGAAAACCTTGGAGAGGGAGCACCACGAGGAGGCTAAGCTTTGCTCTGAAAAATTCTCTGGATCCTTTCCAACCACTATTCTAATAAATATGCTTTTATCGCATTGTTCCAAATACAGTTAGATGTAGAGATTAAAGGGAGTCCCGTTAGAGGCTGCAACACGTTTTCATTTTCTTTAAATAAATTCCAAATATCCAGCTAATTAAAATCTGCAAGAATACTAGACGAACATGAAGTTGCATACGAGCAATCAGAAAAACTGATGCTGGAAGACTTGATTGCGGCCATGCATAAAGGGCAGATTGAGGGAGGCAAACAATGAGTATGCATCTCCCTTTGTAACTCCTCTAATTTGTTTAGAACTCCAAAAAACATTATCCAAATTAGAATATCGATTCGACGTGGACTTTTGTATTTCCATGATGCTTTTTCCCGCTTTTTATCCAAATGAGAAGAAGTTTGAAGATGTTTAACCAATGAATTTACTGAAAATTTTCCAACGGGAGCCAAACGACCACGATCTTCTTTTCAATTTATCTCCTAGACCCCCTTGTATTCCACGAAAGAACTTTCATTGCACTACCACATCCAAGACTACCTTAACTACGGGAAATACAGATTATAGAACTCAAAAGAAAGATAAACCACAAGCTTCAATGATACCGTGCAAATGCTGTGGGATTTCTTCTCTGATTTTCTGGATAGGAAGTTGTTCTTCTTCTACACATTCCTCCACACACAACTCACGAATATTGCTGATAATATTCTCCAAAATCTCAAAATCTTGAGCCTCTTCCCCTACTTCAACCTCTTCTAATTCCTCACTACTGACACTTACAACTGATGCACATCTGAGTTTTGAATTCCTTAAACATTAGGACTGCCAGCTTCCTCTAGAGTACCATTCCCATTTTGCTCCTTGCTTGTATTTTGTTCGCATTCTTGTTGTGAGTTCAATGTACCTCGCACAAAGGACACATTTGAGCCGATTGGTTTGAATTAGGAGAAAGAGAAAGAATGAATCTTAGATTGATGATTGACTAACCTGGCATTGCATCCAGGAGCTTGGACTAGATTTTCAAATGGTATAAAATTAAATGTAGTCTCCTTAGGCGGGAAAACTAAACCTCTCCTGATTGGTGGTTCTGATTTTGGACGGCCTTGGATTTCTCTAACTTTCGCTTGTCTTCTGTCATCCGTTTTCTAATGGAACTTCCATATGCCGGAGGTTGAAGAGAAGATACCCCATATTTTGGCTTTTCTATTATTATTCTCATTGTATAATTCTCTTGTACTTTGAGTTTTATATTAATAAAGAAGCTTGTCTCCTTTTAAAAAAAGCTGATGGCCTCTGACGATGATGCTTGAACAATCTTTCAGTCATCTTGAAAGGATTCCTTTGCATGCTTGGAATGGAGTTTGAAGGAAGGAGAAAATCAAAATTGGAGCTAATCTGATAGTACCAAGAGCAATGTGGTTCAGGATGTCCTATGCTCAATCCCTGCATTGTTGTTTCCTCCCCAATTAATATTCATTTCCACTTGTTGGGCCTTCTTCATAGTTCTTAGCCCACAAGTGAGGGGGAGTGTTAGATGATATATAATTAAATTTGCCTTCACCCACTAACTTAGGCTTTTGGGTCAATTGTTGATTTAACAGTTAGTATCTCCATTAAGACAATGAGTTCTAGCGATCGTAAAGAGAGAAGTCGATCCAACTCACTAGTGGCTTTAGAATCTAGCTTGCAATCAAGGGAAAATATTCTTGCTTTTTCACTACGTGGCCAAGGAGGTGTTGCCAATAAAAGCATTGCAAGACTGTTTGAATAACATTCAACCCTGCATTGACAACCAAGCTCTTGTACTTACTGGAGAAGCTCAATTCCTTAGTAACTTTAGGCGAGCAATGCCTCCATTCTTTAATAACCAATCTATGAACCCTTTGACGACTGGGGAGTGGATTTTAGAGCTAGAGATTTTATTTGAGTTCTTGGGTGCTAATGATGAACAGCGAGTTAGGGGAGGACTTTACTTGCTTAGAGGAGAGGCTCACATTTGATGGGGTTCACCTATTAGTAAGTCAATTGGACCCAATTTCTTGGGCAATATTCAAGGAATTATTATTTGATCAATATCTTCATGATACTATGGAAGATAAGGAAGGAGTGTTTTTCCTACTCATTCAAAGATGCATGTTAGTGGCACAATATAAGAGAAGGTTTTTTGAGTTGTCTCACTTCAGCCTTGATCAGATAGATACAGAGCAAAGAAAGGTGAAGAAGTTCATTAAGGGCCTTCGTAAGGTGATAAAAAGGAATAGTAGTAGCACTTGTATGACGAACTACTTATGTCGAGGCTTTTTCGATCGCACTCTGGATAGGGACATTCCAAGAGTGGAACAACGTAGGGAAGTAGGCACCTCCTATGGGGTTAAGTCTAATATTCCAGAAAGCTCAAGGAGTGCCTTAGTGAGTGTGCATCTACATGTTGAGAGTGGACCTACTTTTGGAACCAAGAGAAAATCTCCTAAAGTGATAAAAGGGAATAGTAGCAGTTTTATGACCAACTACTTACGTCGAGGCTTTTTCAATCACAATGATTTTGGATAG

mRNA sequence

ATGGCTTATGTTTCTAAGACTATGATAATATGTTTATGGTTTAATACAAAATTTGGATGTGGTAAAGGCAAGAACAAATTGGCGAATGACAAGAGGAATCCGTGGCCAAGCCTTTGGGGATTTGACATTGCTTTCGCATATGTTTTTCTAAATTTAGTAGTTTTCAATTTACTTCAGCACCTTTCAGCCAGAACCTTGAGGCTGTTTTGCGAGTTAGGGGAGGACTTTACTTGCTTAGAGGAGAGGCTCACATTTGATGGGGTTCACCTATTAGTAAGTCAATTGGACCCAATTTCTTGGGCAATATTCAAGGAATTATTATTTGATCAATATCTTCATGATACTATGGAAGATAAGGAAGGAGTGTTTTTCCTACTCATTCAAAGATGCATGTTAGTGGCACAATATAAGAGAAGGTTTTTTGAGTTGTCTCACTTCAGCCTTGATCAGATAGATACAGAGCAAAGAAAGGTGAAGAAGTTCATTAAGGGCCTTCGTAAGGTGATAAAAAGGAATAGTAGTAGCACTTGTATGACGAACTACTTATGTCGAGGCTTTTTCGATCGCACTCTGGATAGGGACATTCCAAGAGTGGAACAACGTAGGGAAGTAGGCACCTCCTATGGGGTTAAGTCTAATATTCCAGAAAGCTCAAGGAGTGCCTTAGTGAGTGTGCATCTACATGTTGAGAGTGGACCTACTTTTGGAACCAAGAGAAAATCTCCTAAAGTGATAAAAGGGAATAGTAGCAGTTTTATGACCAACTACTTACGTCGAGGCTTTTTCAATCACAATGATTTTGGATAG

Coding sequence (CDS)

ATGGCTTATGTTTCTAAGACTATGATAATATGTTTATGGTTTAATACAAAATTTGGATGTGGTAAAGGCAAGAACAAATTGGCGAATGACAAGAGGAATCCGTGGCCAAGCCTTTGGGGATTTGACATTGCTTTCGCATATGTTTTTCTAAATTTAGTAGTTTTCAATTTACTTCAGCACCTTTCAGCCAGAACCTTGAGGCTGTTTTGCGAGTTAGGGGAGGACTTTACTTGCTTAGAGGAGAGGCTCACATTTGATGGGGTTCACCTATTAGTAAGTCAATTGGACCCAATTTCTTGGGCAATATTCAAGGAATTATTATTTGATCAATATCTTCATGATACTATGGAAGATAAGGAAGGAGTGTTTTTCCTACTCATTCAAAGATGCATGTTAGTGGCACAATATAAGAGAAGGTTTTTTGAGTTGTCTCACTTCAGCCTTGATCAGATAGATACAGAGCAAAGAAAGGTGAAGAAGTTCATTAAGGGCCTTCGTAAGGTGATAAAAAGGAATAGTAGTAGCACTTGTATGACGAACTACTTATGTCGAGGCTTTTTCGATCGCACTCTGGATAGGGACATTCCAAGAGTGGAACAACGTAGGGAAGTAGGCACCTCCTATGGGGTTAAGTCTAATATTCCAGAAAGCTCAAGGAGTGCCTTAGTGAGTGTGCATCTACATGTTGAGAGTGGACCTACTTTTGGAACCAAGAGAAAATCTCCTAAAGTGATAAAAGGGAATAGTAGCAGTTTTATGACCAACTACTTACGTCGAGGCTTTTTCAATCACAATGATTTTGGATAG

Protein sequence

MAYVSKTMIICLWFNTKFGCGKGKNKLANDKRNPWPSLWGFDIAFAYVFLNLVVFNLLQHLSARTLRLFCELGEDFTCLEERLTFDGVHLLVSQLDPISWAIFKELLFDQYLHDTMEDKEGVFFLLIQRCMLVAQYKRRFFELSHFSLDQIDTEQRKVKKFIKGLRKVIKRNSSSTCMTNYLCRGFFDRTLDRDIPRVEQRREVGTSYGVKSNIPESSRSALVSVHLHVESGPTFGTKRKSPKVIKGNSSSFMTNYLRRGFFNHNDFG

Homology

[Close]

BLAST of PI0028604 vs. ExPASy TrEMBL
Match: A0A6J1DVA0 (uncharacterized protein LOC111023424 OS=Momordica charantia OX=3673 GN=LOC111023424 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.8e-15
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 97  PISWAIFKELLFDQYLHDTMEDKEGVFFL-LIQRCMLVAQYKRRFFELSHFSLDQIDTEQ 156
           P+ WA FK LL+D Y  +T+ED + V FL L+Q  + VAQY+R+F ELS F+L+ I TE 
Sbjct: 149 PVPWARFKNLLYDHYYRETVEDMKEVEFLHLVQGTLTVAQYERKFTELSSFALELIPTEA 208

Query: 157 RKVKKFIKGLRKVIKRNSSSTCMTNYLCRGFFDRTLDRDIP-RVEQRREVGTSYGVKSNI 216
            K+K+F+KGL K I+ +        Y         +D+D+  RV+   EVG+S GVK  +
Sbjct: 209 MKIKRFVKGLHKGIRGSVDLQRPVTYAEAVRGTLIMDKDVSNRVQPLVEVGSSLGVKRKV 268

[Close]

BLAST of PI0028604 vs. ExPASy TrEMBL
Match: A0A6J1DCW8 (uncharacterized protein LOC111019603 OS=Momordica charantia OX=3673 GN=LOC111019603 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.4e-14
Identity = 51/127 (40.16%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 96  DPISWAIFKELLFDQYLHDTMEDKEGVFFL-LIQRCMLVAQYKRRFFELSHFSLDQIDTE 155
           +PI+W   K+LL+D Y   T++D++ + FL L QR ++VAQY+++F E S F+LD I TE
Sbjct: 137 EPITWTTSKDLLYDYYFPKTIKDEKEIEFLHLTQRTLMVAQYEKKFTEFSRFALDLIPTE 196

Query: 156 QRKVKKFIKGLRKVIKRNSSSTCMTNYLCRGFFDRTLDRD-IPRVEQRREVGTSYGVKSN 215
            RK+K+F++GL K IK        T Y         +D+D I + + +++VG S GVK  
Sbjct: 197 ARKIKRFVRGLWKGIKGPIDLQRPTTYAEAIKGALVMDKDVIEKAQPQQKVGLSSGVKRK 256

Query: 216 IPESSRS 221
           +P  S S
Sbjct: 257 VPPISSS 263

[Close]

BLAST of PI0028604 vs. ExPASy TrEMBL
Match: A0A6J1DUM2 (uncharacterized protein LOC111023247 OS=Momordica charantia OX=3673 GN=LOC111023247 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.7e-14
Identity = 52/123 (42.28%), Postives = 72/123 (58.54%), Query Frame = 0


Query: 97  PISWAIFKELLFDQYLHDTMED-KEGVFFLLIQRCMLVAQYKRRFFELSHFSLDQIDTEQ 156
           PI WA FK LL+D Y  +T++D KE  F  L+Q  + VAQY+R+F ELS F+L+ I TE 
Sbjct: 112 PIPWARFKNLLYDYYYPETVKDMKEAEFLHLVQGTLSVAQYERKFTELSRFALELIPTEA 171

Query: 157 RKVKKFIKGLRKVIKRNSSSTCMTNYLCRGFFDRTLDRDIP-RVEQRREVGTSYGVKSNI 216
            K+K+F+KGLRK I+        T Y         +D+D+  +     EVG+S GVK   
Sbjct: 172 LKIKRFVKGLRKGIRGPVDLQRPTTYAEAVRGALVMDKDVSNKASPLPEVGSSSGVKRKF 231

Query: 217 PES 218
           P +
Sbjct: 232 PST 234

[Close]

BLAST of PI0028604 vs. ExPASy TrEMBL
Match: A0A6J1DQJ4 (uncharacterized protein LOC111022885 OS=Momordica charantia OX=3673 GN=LOC111022885 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 97  PISWAIFKELLFDQYLHDTMED-KEGVFFLLIQRCMLVAQYKRRFFELSHFSLDQIDTEQ 156
           P++WA FK+LL+D Y  +T++D KE  F  L Q  + VAQY+R+F ELS F+ + I TE 
Sbjct: 23  PVTWARFKDLLYDYYYPETVKDMKEAEFLHLNQGTLTVAQYERKFTELSRFARELIPTEA 82

Query: 157 RKVKKFIKGLRKVIKRNSSSTCMTNYLCRGFFDRTLDRDIP-RVEQRREVGTSYGVKSNI 215
            K+K+F+KGLRK I+          Y         +D+D+  RV+   EVG+S GVK  +
Sbjct: 83  MKIKRFVKGLRKRIRGPVDLQRPATYAEAVRGALIMDKDVSNRVQPLVEVGSSSGVKRKV 142

[Close]

BLAST of PI0028604 vs. ExPASy TrEMBL
Match: A0A6J1DNV8 (uncharacterized protein LOC111022925 OS=Momordica charantia OX=3673 GN=LOC111022925 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.1e-12
Identity = 48/133 (36.09%), Postives = 70/133 (52.63%), Query Frame = 0


Query: 97  PISWAIFKELLFDQYLHDTM-EDKEGVFFLLIQRCMLVAQYKRRFFELSHFSLDQIDTEQ 156
           P++WA FK+LL++ Y   T+  +K   F  L Q  ++VAQY+R+F ELS F +  I TEQ
Sbjct: 144 PVTWARFKDLLYEYYFPVTVRNEKRAEFLRLTQESLIVAQYERKFTELSRFGMQYIPTEQ 203

Query: 157 RKVKKFIKGLRKVIKRNSSSTCMTNYLCRGFFDRTLDRDIPRVEQRREVGTSYGVKSNIP 216
            K+ KFI GLR+ IK        T Y         +D+ +   + ++ +G+S GVK    
Sbjct: 204 LKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALVMDKCLEEPQSQQVIGSSSGVKRKFA 263

Query: 217 ESSRSALVSVHLH 229
             S S     H H
Sbjct: 264 SFSSSQPSRGHQH 276

[Close]

BLAST of PI0028604 vs. NCBI nr
Match: XP_022156546.1 (uncharacterized protein LOC111023424 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-14
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 97  PISWAIFKELLFDQYLHDTMEDKEGVFFL-LIQRCMLVAQYKRRFFELSHFSLDQIDTEQ 156
           P+ WA FK LL+D Y  +T+ED + V FL L+Q  + VAQY+R+F ELS F+L+ I TE 
Sbjct: 149 PVPWARFKNLLYDHYYRETVEDMKEVEFLHLVQGTLTVAQYERKFTELSSFALELIPTEA 208

Query: 157 RKVKKFIKGLRKVIKRNSSSTCMTNYLCRGFFDRTLDRDIP-RVEQRREVGTSYGVKSNI 216
            K+K+F+KGL K I+ +        Y         +D+D+  RV+   EVG+S GVK  +
Sbjct: 209 MKIKRFVKGLHKGIRGSVDLQRPVTYAEAVRGTLIMDKDVSNRVQPLVEVGSSLGVKRKV 268

[Close]

BLAST of PI0028604 vs. NCBI nr
Match: XP_022151688.1 (uncharacterized protein LOC111019603 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 9.0e-14
Identity = 51/127 (40.16%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 96  DPISWAIFKELLFDQYLHDTMEDKEGVFFL-LIQRCMLVAQYKRRFFELSHFSLDQIDTE 155
           +PI+W   K+LL+D Y   T++D++ + FL L QR ++VAQY+++F E S F+LD I TE
Sbjct: 137 EPITWTTSKDLLYDYYFPKTIKDEKEIEFLHLTQRTLMVAQYEKKFTEFSRFALDLIPTE 196

Query: 156 QRKVKKFIKGLRKVIKRNSSSTCMTNYLCRGFFDRTLDRD-IPRVEQRREVGTSYGVKSN 215
            RK+K+F++GL K IK        T Y         +D+D I + + +++VG S GVK  
Sbjct: 197 ARKIKRFVRGLWKGIKGPIDLQRPTTYAEAIKGALVMDKDVIEKAQPQQKVGLSSGVKRK 256

Query: 216 IPESSRS 221
           +P  S S
Sbjct: 257 VPPISSS 263

[Close]

BLAST of PI0028604 vs. NCBI nr
Match: XP_022156326.1 (uncharacterized protein LOC111023247 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-13
Identity = 52/123 (42.28%), Postives = 72/123 (58.54%), Query Frame = 0


Query: 97  PISWAIFKELLFDQYLHDTMED-KEGVFFLLIQRCMLVAQYKRRFFELSHFSLDQIDTEQ 156
           PI WA FK LL+D Y  +T++D KE  F  L+Q  + VAQY+R+F ELS F+L+ I TE 
Sbjct: 112 PIPWARFKNLLYDYYYPETVKDMKEAEFLHLVQGTLSVAQYERKFTELSRFALELIPTEA 171

Query: 157 RKVKKFIKGLRKVIKRNSSSTCMTNYLCRGFFDRTLDRDIP-RVEQRREVGTSYGVKSNI 216
            K+K+F+KGLRK I+        T Y         +D+D+  +     EVG+S GVK   
Sbjct: 172 LKIKRFVKGLRKGIRGPVDLQRPTTYAEAVRGALVMDKDVSNKASPLPEVGSSSGVKRKF 231

Query: 217 PES 218
           P +
Sbjct: 232 PST 234

[Close]

BLAST of PI0028604 vs. NCBI nr
Match: XP_022155872.1 (uncharacterized protein LOC111022885 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-12
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 97  PISWAIFKELLFDQYLHDTMED-KEGVFFLLIQRCMLVAQYKRRFFELSHFSLDQIDTEQ 156
           P++WA FK+LL+D Y  +T++D KE  F  L Q  + VAQY+R+F ELS F+ + I TE 
Sbjct: 23  PVTWARFKDLLYDYYYPETVKDMKEAEFLHLNQGTLTVAQYERKFTELSRFARELIPTEA 82

Query: 157 RKVKKFIKGLRKVIKRNSSSTCMTNYLCRGFFDRTLDRDIP-RVEQRREVGTSYGVKSNI 215
            K+K+F+KGLRK I+          Y         +D+D+  RV+   EVG+S GVK  +
Sbjct: 83  MKIKRFVKGLRKRIRGPVDLQRPATYAEAVRGALIMDKDVSNRVQPLVEVGSSSGVKRKV 142

[Close]

BLAST of PI0028604 vs. NCBI nr
Match: XP_022155925.1 (uncharacterized protein LOC111022925 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-11
Identity = 48/133 (36.09%), Postives = 70/133 (52.63%), Query Frame = 0


Query: 97  PISWAIFKELLFDQYLHDTM-EDKEGVFFLLIQRCMLVAQYKRRFFELSHFSLDQIDTEQ 156
           P++WA FK+LL++ Y   T+  +K   F  L Q  ++VAQY+R+F ELS F +  I TEQ
Sbjct: 144 PVTWARFKDLLYEYYFPVTVRNEKRAEFLRLTQESLIVAQYERKFTELSRFGMQYIPTEQ 203

Query: 157 RKVKKFIKGLRKVIKRNSSSTCMTNYLCRGFFDRTLDRDIPRVEQRREVGTSYGVKSNIP 216
            K+ KFI GLR+ IK        T Y         +D+ +   + ++ +G+S GVK    
Sbjct: 204 LKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALVMDKCLEEPQSQQVIGSSSGVKRKFA 263

Query: 217 ESSRSALVSVHLH 229
             S S     H H
Sbjct: 264 SFSSSQPSRGHQH 276

The following BLAST results are available for this feature:

BLAST of PI0028604 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVA0	8.8e-15	42.98	uncharacterized protein LOC111023424 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DCW8	4.4e-14	40.16	uncharacterized protein LOC111019603 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DUM2	9.7e-14	42.28	uncharacterized protein LOC111023247 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DQJ4	1.4e-12	41.67	uncharacterized protein LOC111022885 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DNV8	9.1e-12	36.09	uncharacterized protein LOC111022925 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of PI0028604 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156546.1	1.8e-14	42.98	uncharacterized protein LOC111023424 [Momordica charantia]	[more]
XP_022151688.1	9.0e-14	40.16	uncharacterized protein LOC111019603 [Momordica charantia]	[more]
XP_022156326.1	2.0e-13	42.28	uncharacterized protein LOC111023247 [Momordica charantia]	[more]
XP_022155872.1	2.9e-12	41.67	uncharacterized protein LOC111022885 [Momordica charantia]	[more]
XP_022155925.1	1.9e-11	36.09	uncharacterized protein LOC111022925 [Momordica charantia]	[more]

BLAST of PI0028604 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 95..166 e-value: 1.2E-5 score: 25.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028604.1	PI0028604.1	mRNA