PI0028601 (gene) Melon (PI 482460) v1

Overview


Name	PI0028601
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	photosynthetic NDH subunit of subcomplex B 3, chloroplastic
Location	chr01: 27812433 .. 27813982 (-)
RNA-Seq Expression	PI0028601
Synteny	PI0028601

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGACACCAGATAAGGCCACAAAGAACCACACAAACACAGCCATAATGATTTATCTTTCACCAAAACACTTCATTTCTTCAACCCCCAATTCCCCAAAATGGAGACTCTCCATCTGGGTTCATACCATTTATCATCTTCATCCTCCTTTCGTTCCTTCAACTACATTACGAATTCCTCCCACACCCTTAAACGCTTTCGCCCTCTTACTTTCCGTAGAACCCAAGTCAGAGCTGTTGGCACTGTTCCCCAGAGTCAATCTGAAGCCACTGACCCCGAGGAGCCTCCGATTGTTGATTTGGCTTTCGTCAATGTAAGTTGTAAACTTGTAATGTCAAATTTTATGGGTTTGTTTTGGATTATCGAGTATGGTTCTGTGTTTTTTTTTTTCAGTCTGTGTTGCTTCCTGATCGAACCCCAGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGTTGGATTCTAATATTGACTTGTATGGACCTTATGTGAGTTTCCCTGTTCATTAACTTGTTGAGGAACTTGGGGTTTCTATTGGTTTTGATTATCGTATGGTTTTGATGTTTTACAGTCGAGATTTCTGTTGAACTGTGCTGGTGGAGGAACCTGTGGAACTTGTATGGTGGAGGTGATGTTTCTGCATTAGATCATTTTCTCAACAGGACTTAATCACTACTCTTTTCATTTCTACTTTCTGAATCATTGTTTATTTGATCATTATGGTAAATTTATTCAGTTCATGACTTAGATTGACTTAGAAGATAAAAGAGTTCAAAAGTTGGTGCTAGGGCCATTGGAGAATGAAAGAAATGAAGAAGAAATTCAATCTTAATGTTCTGCTACAAGTCTTCTGACTGAATTTTACCATTTCAGATTGTTGAAGGGAAAGAGCTACTGAACCCTCGCACAGACATAGAGAAAGACAAACTTAAAAGGGTAAAAACACCGATGCCATTGTCATGTAGATGTTGAGTTCATTTGAATTTTTCTTTCAAATCCTTTGAACATCATTTTGTTGCTGAATTAAACGATAGCTCAAGGCGATACAATGATGGATCTTGTTTTCATGTACAGAAACCTAAAAACTGGAGACTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGGTAAATAGTTGAAGCTGGATTGATGATGTTCTTGAGTAGAATAGTCTCACAGTCTTCTCTTTTTCACAAAAGTTGATGAGTTTTAATTGTTTGTTTTCTTTGGATGCAGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGCTATGAAAAAGTAGAGCTTTCAGAGTCATCGTCTGAGTCTGCGTAATTTAACTCTTTTACTCTTTTTGACCTATCGGAGTCAGCTGTGAAGATTGAGCTATGGACATTTAACTCAGCCACTTTGGAGCCTACAAAGACAAGCTCCCTGCCCCAGTATCATCATTGTAATTATTCCTTGTCAATATTAAACAGTTCATTCTTTTTTTGGGCAATAAATGGTTAAGTGGTGCTTTCCTTCTTGTTAA

mRNA sequence

GGCGACACCAGATAAGGCCACAAAGAACCACACAAACACAGCCATAATGATTTATCTTTCACCAAAACACTTCATTTCTTCAACCCCCAATTCCCCAAAATGGAGACTCTCCATCTGGGTTCATACCATTTATCATCTTCATCCTCCTTTCGTTCCTTCAACTACATTACGAATTCCTCCCACACCCTTAAACGCTTTCGCCCTCTTACTTTCCGTAGAACCCAAGTCAGAGCTGTTGGCACTGTTCCCCAGAGTCAATCTGAAGCCACTGACCCCGAGGAGCCTCCGATTGTTGATTTGGCTTTCGTCAATTCTGTGTTGCTTCCTGATCGAACCCCAGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGTTGGATTCTAATATTGACTTGTATGGACCTTATTCGAGATTTCTGTTGAACTGTGCTGGTGGAGGAACCTGTGGAACTTGTATGGTGGAGATTGTTGAAGGGAAAGAGCTACTGAACCCTCGCACAGACATAGAGAAAGACAAACTTAAAAGGAAACCTAAAAACTGGAGACTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGCTATGAAAAAGTAGAGCTTTCAGAGTCATCGTCTGAGTCTGCGTAATTTAACTCTTTTACTCTTTTTGACCTATCGGAGTCAGCTGTGAAGATTGAGCTATGGACATTTAACTCAGCCACTTTGGAGCCTACAAAGACAAGCTCCCTGCCCCAGTATCATCATTGTAATTATTCCTTGTCAATATTAAACAGTTCATTCTTTTTTTGGGCAATAAATGGTTAAGTGGTGCTTTCCTTCTTGTTAA

Coding sequence (CDS)

ATGGAGACTCTCCATCTGGGTTCATACCATTTATCATCTTCATCCTCCTTTCGTTCCTTCAACTACATTACGAATTCCTCCCACACCCTTAAACGCTTTCGCCCTCTTACTTTCCGTAGAACCCAAGTCAGAGCTGTTGGCACTGTTCCCCAGAGTCAATCTGAAGCCACTGACCCCGAGGAGCCTCCGATTGTTGATTTGGCTTTCGTCAATTCTGTGTTGCTTCCTGATCGAACCCCAGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGTTGGATTCTAATATTGACTTGTATGGACCTTATTCGAGATTTCTGTTGAACTGTGCTGGTGGAGGAACCTGTGGAACTTGTATGGTGGAGATTGTTGAAGGGAAAGAGCTACTGAACCCTCGCACAGACATAGAGAAAGACAAACTTAAAAGGAAACCTAAAAACTGGAGACTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGCTATGAAAAAGTAGAGCTTTCAGAGTCATCGTCTGAGTCTGCGTAA

Protein sequence

METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPEEPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKAHEWGYEKVELSESSSESA

Homology

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BLAST of PI0028601 vs. ExPASy Swiss-Prot
Match: Q9LU21 (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.8e-62
Identity = 124/192 (64.58%), Postives = 140/192 (72.92%), Query Frame = 0


Query: 6   LGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTF---------RRTQVRAVGTVPQSQSEA 65
           +GS  LS S    S     + SH  K  +P ++         R   VRA+ T P SQ  A
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 66  TD-PEEPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNC 125
            D P+EPP VD AFV+SVLLPD TPDVH+RRA GGQKLR+IMLDSNI+LYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 126 AGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQL 185
           AG GTC TCMVEIV GKELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

Query: 186 PEWKAHEWGYEK 188
           PEWKAHEW   K
Sbjct: 181 PEWKAHEWNIPK 192

[Close]

BLAST of PI0028601 vs. ExPASy TrEMBL
Match: A0A0A0KC78 (2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447110 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 5.7e-104
Identity = 188/197 (95.43%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           ME LHLGSYHL SSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPD TPDVH RRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSSES 198
           HEWGYE+VELS+SS  +
Sbjct: 181 HEWGYEEVELSDSSEST 197

[Close]

BLAST of PI0028601 vs. ExPASy TrEMBL
Match: A0A5A7UW39 (Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002050 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.3e-103
Identity = 188/197 (95.43%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFR LTFRRTQVRAVGTVPQSQSEA DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 61  EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPD TPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSSES 198
           HEWGYE+V+LSE S  +
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of PI0028601 vs. ExPASy TrEMBL
Match: A0A1S3CGA8 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500602 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.2e-103
Identity = 188/197 (95.43%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFR LTFRRTQVRAVGTV QSQSEATDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPD TPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSSES 198
           HEWGYE+V+LSE S  +
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of PI0028601 vs. ExPASy TrEMBL
Match: A0A6J1CVZ7 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014722 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 3.8e-100
Identity = 181/197 (91.88%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           ME  HLGSY LSSSSS RSFNYITNS+HTLKR RPL FRR ++RAVGTVPQSQSE TDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 61  EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPD TPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSSES 198
           HEWGYEKVELSESS  S
Sbjct: 181 HEWGYEKVELSESSESS 197

[Close]

BLAST of PI0028601 vs. ExPASy TrEMBL
Match: A0A6J1KDJ1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494655 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.4e-94
Identity = 169/197 (85.79%), Postives = 182/197 (92.39%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           ME LHLG      SSSFRSFNYITNS+HTL RFRPLTFRR+++RAVGTVPQSQS+ ++P+
Sbjct: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60

Query: 61  EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPD TPDVHFRRACGGQKLRNIMLDSN++LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSSES 198
           HEWGYEKVELSESS  S
Sbjct: 181 HEWGYEKVELSESSESS 191

[Close]

BLAST of PI0028601 vs. NCBI nr
Match: XP_004141758.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >KGN45396.1 hypothetical protein Csa_016364 [Cucumis sativus])

HSP 1 Score: 386.7 bits (992), Expect = 1.2e-103
Identity = 188/197 (95.43%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           ME LHLGSYHL SSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPD TPDVH RRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSSES 198
           HEWGYE+VELS+SS  +
Sbjct: 181 HEWGYEEVELSDSSEST 197

[Close]

BLAST of PI0028601 vs. NCBI nr
Match: KAA0059320.1 (photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK04007.1 photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa])

HSP 1 Score: 385.6 bits (989), Expect = 2.6e-103
Identity = 188/197 (95.43%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFR LTFRRTQVRAVGTVPQSQSEA DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 61  EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPD TPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSSES 198
           HEWGYE+V+LSE S  +
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of PI0028601 vs. NCBI nr
Match: XP_008462178.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis melo])

HSP 1 Score: 384.8 bits (987), Expect = 4.5e-103
Identity = 188/197 (95.43%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFR LTFRRTQVRAVGTV QSQSEATDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPD TPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSSES 198
           HEWGYE+V+LSE S  +
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of PI0028601 vs. NCBI nr
Match: XP_022145222.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia])

HSP 1 Score: 374.0 bits (959), Expect = 7.9e-100
Identity = 181/197 (91.88%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           ME  HLGSY LSSSSS RSFNYITNS+HTLKR RPL FRR ++RAVGTVPQSQSE TDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 61  EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPD TPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSSES 198
           HEWGYEKVELSESS  S
Sbjct: 181 HEWGYEKVELSESSESS 197

[Close]

BLAST of PI0028601 vs. NCBI nr
Match: XP_038899995.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 369.8 bits (948), Expect = 1.5e-98
Identity = 177/197 (89.85%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           ME LHLGSY LSSSSSFRSFNYIT+SS TLKRFRPL+FRR  +RAVGTVPQ+QSE TDPE
Sbjct: 1   MEALHLGSYRLSSSSSFRSFNYITSSSQTLKRFRPLSFRRAHIRAVGTVPQNQSETTDPE 60

Query: 61  EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPD TPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPVVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLN RTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIIEGKELLNSRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSSES 198
           HEWGYEKVE+SESS  +
Sbjct: 181 HEWGYEKVEISESSESA 197

[Close]

BLAST of PI0028601 vs. TAIR 10
Match: AT3G16250.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 240.4 bits (612), Expect = 1.3e-63
Identity = 124/192 (64.58%), Postives = 140/192 (72.92%), Query Frame = 0


Query: 6   LGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTF---------RRTQVRAVGTVPQSQSEA 65
           +GS  LS S    S     + SH  K  +P ++         R   VRA+ T P SQ  A
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 66  TD-PEEPPIVDLAFVNSVLLPDRTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNC 125
            D P+EPP VD AFV+SVLLPD TPDVH+RRA GGQKLR+IMLDSNI+LYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 126 AGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQL 185
           AG GTC TCMVEIV GKELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

Query: 186 PEWKAHEWGYEK 188
           PEWKAHEW   K
Sbjct: 181 PEWKAHEWNIPK 192

[Close]

BLAST of PI0028601 vs. TAIR 10
Match: AT4G32590.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-28
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 40  RTQVRAVGTVPQSQSEATDPE-----EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQK-L 99
           R +V +  +   S S+A+ P+      P  ++L F       D +  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNW 159
           R+IM D+ I+LY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+KP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 160 RLACQTTVGKPDSRGMLVVQQLPEWK 180
           RLACQT VG  ++ G +VVQ++P+WK
Sbjct: 148 RLACQTIVGNKENSGKVVVQRIPQWK 172

[Close]

BLAST of PI0028601 vs. TAIR 10
Match: AT4G32590.3 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-23
Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 40  RTQVRAVGTVPQSQSEATDPE-----EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQK-L 99
           R +V +  +   S S+A+ P+      P  ++L F       D +  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNW 159
           R+IM D+ I+LY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+KP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 160 RLACQTTVGKPDSRG 169
           RLACQT VG  ++ G
Sbjct: 148 RLACQTIVGNKENSG 161

[Close]

BLAST of PI0028601 vs. TAIR 10
Match: AT4G32590.4 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-15
Identity = 45/115 (39.13%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 40  RTQVRAVGTVPQSQSEATDPE-----EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQK-L 99
           R +V +  +   S S+A+ P+      P  ++L F       D +  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKR 149
           R+IM D+ I+LY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKK 141

[Close]

BLAST of PI0028601 vs. TAIR 10
Match: AT4G32590.2 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 40  RTQVRAVGTVPQSQSEATDPE-----EPPIVDLAFVNSVLLPDRTPDVHFRRACGGQK-L 99
           R +V +  +   S S+A+ P+      P  ++L F       D +  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVE 128
           R+IM D+ I+LY  Y + ++NC GGG+CGTC+VE
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVE 120

The following BLAST results are available for this feature:

BLAST of PI0028601 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU21	1.8e-62	64.58	Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of PI0028601 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC78	5.7e-104	95.43	2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A5A7UW39	1.3e-103	95.43	Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CGA8	2.2e-103	95.43	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1CVZ7	3.8e-100	91.88	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charant...	[more]
A0A6J1KDJ1	5.4e-94	85.79	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima ...	[more]

BLAST of PI0028601 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141758.1	1.2e-103	95.43	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >K...	[more]
KAA0059320.1	2.6e-103	95.43	photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK0400...	[more]
XP_008462178.1	4.5e-103	95.43	PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis ...	[more]
XP_022145222.1	7.9e-100	91.88	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia...	[more]
XP_038899995.1	1.5e-98	89.85	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida]	[more]

BLAST of PI0028601 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16250.1	1.3e-63	64.58	NDH-dependent cyclic electron flow 1	[more]
AT4G32590.1	2.3e-28	43.15	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.3	1.3e-23	42.22	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.4	3.8e-15	39.13	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.2	1.5e-08	36.17	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 113..161 e-value: 2.9E-10 score: 39.9
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 90..161 e-value: 1.06341E-8 score: 48.5452
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 71..181 e-value: 5.7E-19 score: 69.8
None	No IPR available	PANTHER	PTHR23426:SF27	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTIC	coord: 1..188
None	No IPR available	PANTHER	PTHR23426	FERREDOXIN/ADRENODOXIN	coord: 1..188
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 80..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028601.1	PI0028601.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0051536	iron-sulfur cluster binding