Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCAAGTTCACAGCAAATTTCCATAGATATGAATGAACTCTATTCCTTCATCACAGCAATTAATGAAAGAAATTATGAAATCAACAGCTTACCAATTTGCATCACAATGCAGAGACCATCACCAGCCAAACAGCTCTAAGACTGAGAATAATCTTGGGAAGACAATTCTTGGTCTTACTTTTCAGGCAGTTTTGACTTTGTTCATTACCTCACCCAGTTCATCTCCTCCACTTTTGACACATCTCTTTGGGGCTGCAGTCTTGATTAGCTTTGGAGTTTCATTTGCTGGATTTTTCCTTCAAAATGGATTCCCGAGAATTGCGCTTCTGTTCGGAAAGATTGGTGCTCTTATTGCTGCAATCGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCTTGTGGCTTCTCCTTGATGGCTTTTGTTCTATCATTTAGAGGGTAG
mRNA sequence
ATGGAATCAAGTTCACAGCAAATTTCCATAGATATGAATGAACTCTATTCCTTCATCACAGCAATTAATGAAAGAAATTATGAAATCAACAGCTTACCAATTTGCATCACAATGCAGAGACCATCACCAACAATTCTTGGTCTTACTTTTCAGGCAGTTTTGACTTTGTTCATTACCTCACCCAGTTCATCTCCTCCACTTTTGACACATCTCTTTGGGGCTGCAGTCTTGATTAGCTTTGGAGTTTCATTTGCTGGATTTTTCCTTCAAAATGGATTCCCGAGAATTGCGCTTCTGTTCGGAAAGATTGGTGCTCTTATTGCTGCAATCGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCTTGTGGCTTCTCCTTGATGGCTTTTGTTCTATCATTTAGAGGGTAG
Coding sequence (CDS)
ATGGAATCAAGTTCACAGCAAATTTCCATAGATATGAATGAACTCTATTCCTTCATCACAGCAATTAATGAAAGAAATTATGAAATCAACAGCTTACCAATTTGCATCACAATGCAGAGACCATCACCAACAATTCTTGGTCTTACTTTTCAGGCAGTTTTGACTTTGTTCATTACCTCACCCAGTTCATCTCCTCCACTTTTGACACATCTCTTTGGGGCTGCAGTCTTGATTAGCTTTGGAGTTTCATTTGCTGGATTTTTCCTTCAAAATGGATTCCCGAGAATTGCGCTTCTGTTCGGAAAGATTGGTGCTCTTATTGCTGCAATCGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCTTGTGGCTTCTCCTTGATGGCTTTTGTTCTATCATTTAGAGGGTAG
Protein sequence
MESSSQQISIDMNELYSFITAINERNYEINSLPICITMQRPSPTILGLTFQAVLTLFITSPSSSPPLLTHLFGAAVLISFGVSFAGFFLQNGFPRIALLFGKIGALIAAIGVCIIASLLLIHQNFAWISWLACGFSLMAFVLSFRG
Homology
BLAST of PI0028572 vs. ExPASy TrEMBL
Match:
A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)
HSP 1 Score: 224.2 bits (570), Expect = 3.6e-55
Identity = 127/158 (80.38%), Postives = 132/158 (83.54%), Query Frame = 0
Query: 1 MESSSQQISIDMNELYSFITAINERNYEINSLPICITMQRPSP------------TILGL 60
MESSSQQISIDMN LYS IT+INERN EIN LPICI MQ SP TILGL
Sbjct: 1 MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60
Query: 61 TFQAVLTLFITSPSSSPPLLTHLFGAAVLISFGVSFAGFFLQNGFPRIALLFGKIGALIA 120
TFQAVL LFITS +SSPPLLTHLFGAAVLISF VSF G FLQ+GFPRIALLF KIGALIA
Sbjct: 61 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120
Query: 121 AIGVCIIASLLLIHQNFAWISWLACGFSLMAFVLSFRG 147
AIGVCI+AS LLIHQNFAWISWLACGFSLMAF+LSFRG
Sbjct: 121 AIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFRG 157
BLAST of PI0028572 vs. ExPASy TrEMBL
Match:
A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)
HSP 1 Score: 223.4 bits (568), Expect = 6.2e-55
Identity = 125/147 (85.03%), Postives = 127/147 (86.39%), Query Frame = 0
Query: 12 MNELYSFITAINERNYEINSLPICITMQRPSP------------TILGLTFQAVLTLFIT 71
MNELYSFITAINERN EINSLPICITMQRPSP TILGLTFQAVL LFIT
Sbjct: 1 MNELYSFITAINERNPEINSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFIT 60
Query: 72 SPSSSPPLLTHLFGAAVLISFGVSFAGFFLQNGFPRIALLFGKIGALIAAIGVCIIASLL 131
SP+SSPPLLTHLF AAVLISF VSFAG FLQNGFPRIALLF KIGALIAAIGVCI+AS L
Sbjct: 61 SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVAS-L 120
Query: 132 LIHQNFAWISWLACGFSLMAFVLSFRG 147
LIHQNFAWISWLA GFSLMAFVLSFRG
Sbjct: 121 LIHQNFAWISWLASGFSLMAFVLSFRG 146
BLAST of PI0028572 vs. ExPASy TrEMBL
Match:
A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)
HSP 1 Score: 150.2 bits (378), Expect = 6.6e-33
Identity = 90/164 (54.88%), Postives = 108/164 (65.85%), Query Frame = 0
Query: 1 MESSSQQISIDMNELYSFITAINERNYEI-------NSLPICITMQR-PSPT-------- 60
M S+S Q S+DM+ SFI I++RNY + N LP+ I MQ+ P T
Sbjct: 1 MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60
Query: 61 --ILGLTFQAVLTLFITS-PSSSPPLLTHLFGAAVLISFGVSFAGFFLQNGFPRIALLFG 120
IL L+FQAVL LFI+S P+S PPLL H F AAV ISF VSFA FL N FPR A LF
Sbjct: 61 KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120
Query: 121 KIGALIAAIGVCIIASLLLIHQNFAWISWLACGFSLMAFVLSFR 146
K+GAL +A GVC IAS LL+HQNFAWI W+AC FS++ F LSF+
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of PI0028572 vs. ExPASy TrEMBL
Match:
A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 6.0e-26
Identity = 81/162 (50.00%), Postives = 97/162 (59.88%), Query Frame = 0
Query: 2 ESSSQQISIDMNELYSFITAINERNYEINS----------LPICITMQRPSP-------- 61
E+ +IS+DMNELYSFITA+ RN I+S LPI I MQRPSP
Sbjct: 3 ETKPHEISLDMNELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRPSPVNSPQFGN 62
Query: 62 TILGLTFQAVLTLFITSPSSSPPLLTHLFGAAVLISFGVSFAGFFLQNGFPRIALLFGKI 121
T + FQA+L LF+ P S PP L+ L G +L +F SF G LQ FP+IA L
Sbjct: 63 TFVSSNFQAILGLFLNLPPSPPP-LSELIGTVMLTAFVFSFCGVLLQKPFPKIAHLLQMF 122
Query: 122 GALIAAIGVCIIASLLLIHQNFAWISWLACGFSLMAFVLSFR 146
GAL+AAIGVCI+ S LL H N WI WLACG L AF+ SF+
Sbjct: 123 GALLAAIGVCIMGSPLL-HPNLTWIRWLACGLILPAFITSFK 162
BLAST of PI0028572 vs. ExPASy TrEMBL
Match:
A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)
HSP 1 Score: 120.9 bits (302), Expect = 4.3e-24
Identity = 76/124 (61.29%), Postives = 82/124 (66.13%), Query Frame = 0
Query: 1 MESSSQQISIDMNELYSFITAINERNYEINS-------------LPICITMQRPSP---- 60
M S+ QQ S+DMN L SFITAINERN I+S LPICI MQRP P
Sbjct: 1 MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSS 60
Query: 61 -----TILGLTFQAVLTLFITSPSSSPPLLTHLFGAAVLISFGVSFAGFFLQNGFPRIAL 103
TILGLTFQAVL LFI+ PSS P L T LFGAAVLISF VSFAG FLQ +PR+AL
Sbjct: 61 QSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPRMAL 120
BLAST of PI0028572 vs. NCBI nr
Match:
KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])
HSP 1 Score: 224.2 bits (570), Expect = 7.5e-55
Identity = 127/158 (80.38%), Postives = 132/158 (83.54%), Query Frame = 0
Query: 1 MESSSQQISIDMNELYSFITAINERNYEINSLPICITMQRPSP------------TILGL 60
MESSSQQISIDMN LYS IT+INERN EIN LPICI MQ SP TILGL
Sbjct: 1 MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60
Query: 61 TFQAVLTLFITSPSSSPPLLTHLFGAAVLISFGVSFAGFFLQNGFPRIALLFGKIGALIA 120
TFQAVL LFITS +SSPPLLTHLFGAAVLISF VSF G FLQ+GFPRIALLF KIGALIA
Sbjct: 61 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120
Query: 121 AIGVCIIASLLLIHQNFAWISWLACGFSLMAFVLSFRG 147
AIGVCI+AS LLIHQNFAWISWLACGFSLMAF+LSFRG
Sbjct: 121 AIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFRG 157
BLAST of PI0028572 vs. NCBI nr
Match:
KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 223.4 bits (568), Expect = 1.3e-54
Identity = 125/147 (85.03%), Postives = 127/147 (86.39%), Query Frame = 0
Query: 12 MNELYSFITAINERNYEINSLPICITMQRPSP------------TILGLTFQAVLTLFIT 71
MNELYSFITAINERN EINSLPICITMQRPSP TILGLTFQAVL LFIT
Sbjct: 1 MNELYSFITAINERNPEINSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFIT 60
Query: 72 SPSSSPPLLTHLFGAAVLISFGVSFAGFFLQNGFPRIALLFGKIGALIAAIGVCIIASLL 131
SP+SSPPLLTHLF AAVLISF VSFAG FLQNGFPRIALLF KIGALIAAIGVCI+AS L
Sbjct: 61 SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVAS-L 120
Query: 132 LIHQNFAWISWLACGFSLMAFVLSFRG 147
LIHQNFAWISWLA GFSLMAFVLSFRG
Sbjct: 121 LIHQNFAWISWLASGFSLMAFVLSFRG 146
BLAST of PI0028572 vs. NCBI nr
Match:
KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])
HSP 1 Score: 150.2 bits (378), Expect = 1.4e-32
Identity = 90/164 (54.88%), Postives = 108/164 (65.85%), Query Frame = 0
Query: 1 MESSSQQISIDMNELYSFITAINERNYEI-------NSLPICITMQR-PSPT-------- 60
M S+S Q S+DM+ SFI I++RNY + N LP+ I MQ+ P T
Sbjct: 1 MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60
Query: 61 --ILGLTFQAVLTLFITS-PSSSPPLLTHLFGAAVLISFGVSFAGFFLQNGFPRIALLFG 120
IL L+FQAVL LFI+S P+S PPLL H F AAV ISF VSFA FL N FPR A LF
Sbjct: 61 KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120
Query: 121 KIGALIAAIGVCIIASLLLIHQNFAWISWLACGFSLMAFVLSFR 146
K+GAL +A GVC IAS LL+HQNFAWI W+AC FS++ F LSF+
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of PI0028572 vs. NCBI nr
Match:
KAG6579136.1 (hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 145.2 bits (365), Expect = 4.4e-31
Identity = 81/145 (55.86%), Postives = 102/145 (70.34%), Query Frame = 0
Query: 1 MESSSQQISIDMNELYSFITAINERNYEINSLPICITMQRPSPTILGLTFQAVLTLFITS 60
M S+ Q +SIDMN+ S A + + E + + GLTFQAVL LFI++
Sbjct: 1 MGSTPQHVSIDMNQFSSIQGASDGLHREPQA------RNNLGKIVFGLTFQAVLALFIST 60
Query: 61 PSSSPPLLTHLFGAAVLISFGVSFAGFFLQNGFPRIALLFGKIGALIAAIGVCIIASLLL 120
P+S PPLL +LF AA+LIS +S A FLQ FPRIAL FGKIGA++AA+G CI+ASLLL
Sbjct: 61 PTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLAAVGACIMASLLL 120
Query: 121 IHQNFAWISWLACGFSLMAFVLSFR 146
HQNF+WI WLACGF+LMAF+LSF+
Sbjct: 121 KHQNFSWIPWLACGFALMAFILSFK 139
BLAST of PI0028572 vs. NCBI nr
Match:
KAG6579137.1 (hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 140.6 bits (353), Expect = 1.1e-29
Identity = 83/158 (52.53%), Postives = 101/158 (63.92%), Query Frame = 0
Query: 1 MESSSQQISIDMNELYSFITAINERNYEINSLPICITMQRPSP-------------TILG 60
M S+ Q +SIDMN+ A + LP M RP P + G
Sbjct: 1 MGSTPQHVSIDMNQFCPIQGA-------SDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFG 60
Query: 61 LTFQAVLTLFITSPSSSPPLLTHLFGAAVLISFGVSFAGFFLQNGFPRIALLFGKIGALI 120
LTFQAVL LFI+ P+S PPLL H+F AA+LISF +S A FLQ +PRIAL GKIGAL+
Sbjct: 61 LTFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALL 120
Query: 121 AAIGVCIIASLLLIHQNFAWISWLACGFSLMAFVLSFR 146
AAIG C I S+LL HQ+F+WI WLACGF+LMAF+LSF+
Sbjct: 121 AAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KJN8 | 3.6e-55 | 80.38 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1 | [more] |
| A0A5A7U7U1 | 6.2e-55 | 85.03 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A0A0KJP2 | 6.6e-33 | 54.88 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1 | [more] |
| A0A5D3BEH8 | 6.0e-26 | 50.00 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A6J1CY58 | 4.3e-24 | 61.29 | uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN49803.1 | 7.5e-55 | 80.38 | hypothetical protein Csa_004681 [Cucumis sativus] | [more] |
| KAA0050246.1 | 1.3e-54 | 85.03 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
| KGN49808.1 | 1.4e-32 | 54.88 | hypothetical protein Csa_004650 [Cucumis sativus] | [more] |
| KAG6579136.1 | 4.4e-31 | 55.86 | hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6579137.1 | 1.1e-29 | 52.53 | hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
