PI0028521 (gene) Melon (PI 482460) v1

Overview


Name	PI0028521
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr07: 16205436 .. 16206861 (-)
RNA-Seq Expression	PI0028521
Synteny	PI0028521

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCCAAAGTTGGCACGAATGTCAGACAGGACACCTGCGGCGCAGTTGCAGCTTTGTCAGAAGACTTAATTACCGTCCAGTGTCCTGTCACATCACACCTCGCCTATAAATATCGACAATCTTCTCAGTTGCGAGCATGCAAAAATTTGAAGAGCAAGTTCTATTCCTCCATTCCTTTCCTTCTGTCTAGGTAAGAGCCTAGTTTAGAGAGAGAGAATTCTCTTACCGCTTCCCCTCAAACTAGTTAGGCAAAAATCAAAGCCAATGAGTATAAGAAATCATACTCCGCGGTTCAACACTTCTTATTGTAATTCATTTTATGTTTTGAATGTATCCATGTATAATGAATATTTCAACTTCGTAAGACCTAAAATATTAATTATAATGAATATATATTTCTACTTCCATTCTCCCATCTCTTTACTTTTCAACTTTCATTGATGTATGCATGAACAATGTATTAAATAGTTAACGCGATAGAATTAGAAATTTCACATTATACGTTCTTGTTCAGTTAAACACAAAGTTTATACTATACAGATGATCTAGAACACCAAACAGCTTGGCGGTCACCCTGGCGAAGATTCACACGAGCATATTCGTAGTTTCTACTCTATTTGTGCTTCCTTTCACATGCCTGGTATATCACTTGAAGAGTTGCAATTTGCCCTCTTCCCATTAACACTAAGGGATAAGGCAAAAAGATGAGCGAACTCTCAAGAGGACAGAGAGGTTGGAACTTGGGACCAACTGATTGAGAAGTTCATGAAGTTCTTTCCACCTCATGAGAACGCCAGAAGAAGGAAGGAGTTTATAGGCTTTCACCAAAAGGATAGATAAAACCCGTGGAATAGGTTTAAGAGAATGGTAAAAGCATGCCCCCACAATGACATTCCTGAATGCATATTGATGGAGGTGTTTTACTTTGGACTTAACAAGGGAACACAACAAACTATTGACGCTGTGTTTATAGGGGTATGTTGAAAAGTTCATACAACCAGATCAATGCGACACTGGATATGATGGCCAGCAATAATGAAGAATGGGATGGAGATGATTTCGGCAATCGTAGAGGAGGAAGAGGAAGAAGCGAGGAAGGATTAGACAAGAACATCGTGGTGGCCTTGCAAGGAAAAATGACTGCAATGAACAATCCGTTGAAATCAATGGCAAGATCGCAGGTTAATGTTGCTGACAGGTCTATGCAGGCGGTCAATCATGTTTTTGGGTGTTTTGAAGCAACTTCACATCAACATCCCGTTTATTGATGGGTTAGAGCAAATGTCTTCTTATGTCAAGTTCTTGCAAGACATCTTGGCAAAGAAAAGAAGGATGAACGATTGCGAAACAGTGGCTCTAACACAGGCAACAAGCAACGTCTTCAAAAATGGGGTGCCCGGGGAAGATGACAGATCTTGGTAG

mRNA sequence

ATGGTGGCCAAAGTTGGCACGAATGTCAGACAGGACACCTGCGGCGCAGTTGCAGCTTTGTCAGAAGACTTAATTACCGTCCAGTGTCCTGTCACATCACACCTCGCCTATAAATATCGACAATCTTCTCAGTTGCGAGCATGCAAAAATTTGAAGAGCAAGTTCTATTCCTCCATTCCTTTCCTTCTGTCTAGGGGTATGTTGAAAAGTTCATACAACCAGATCAATGCGACACTGGATATGATGGCCAGCAATAATGAAGAATGGGATGGAGATGATTTCGGCAATCGTAGAGGAGGAAGAGGAAGAAGCGAGGAAGGATTAGACAAGAACATCGTGGTGGCCTTGCAAGGAAAAATGACTGCAATGAACAATCCGTTGAAATCAATGGCAAGATCGCAGCAACTTCACATCAACATCCCGTTTATTGATGGGTTAGAGCAAATGTCTTCTTATGTCAAGTTCTTGCAAGACATCTTGGCAAAGAAAAGAAGGATGAACGATTGCGAAACAGTGGCTCTAACACAGGCAACAAGCAACGTCTTCAAAAATGGGGTGCCCGGGGAAGATGACAGATCTTGGTAG

Coding sequence (CDS)

ATGGTGGCCAAAGTTGGCACGAATGTCAGACAGGACACCTGCGGCGCAGTTGCAGCTTTGTCAGAAGACTTAATTACCGTCCAGTGTCCTGTCACATCACACCTCGCCTATAAATATCGACAATCTTCTCAGTTGCGAGCATGCAAAAATTTGAAGAGCAAGTTCTATTCCTCCATTCCTTTCCTTCTGTCTAGGGGTATGTTGAAAAGTTCATACAACCAGATCAATGCGACACTGGATATGATGGCCAGCAATAATGAAGAATGGGATGGAGATGATTTCGGCAATCGTAGAGGAGGAAGAGGAAGAAGCGAGGAAGGATTAGACAAGAACATCGTGGTGGCCTTGCAAGGAAAAATGACTGCAATGAACAATCCGTTGAAATCAATGGCAAGATCGCAGCAACTTCACATCAACATCCCGTTTATTGATGGGTTAGAGCAAATGTCTTCTTATGTCAAGTTCTTGCAAGACATCTTGGCAAAGAAAAGAAGGATGAACGATTGCGAAACAGTGGCTCTAACACAGGCAACAAGCAACGTCTTCAAAAATGGGGTGCCCGGGGAAGATGACAGATCTTGGTAG

Protein sequence

MVAKVGTNVRQDTCGAVAALSEDLITVQCPVTSHLAYKYRQSSQLRACKNLKSKFYSSIPFLLSRGMLKSSYNQINATLDMMASNNEEWDGDDFGNRRGGRGRSEEGLDKNIVVALQGKMTAMNNPLKSMARSQQLHINIPFIDGLEQMSSYVKFLQDILAKKRRMNDCETVALTQATSNVFKNGVPGEDDRSW

Homology

[Close]

BLAST of PI0028521 vs. ExPASy TrEMBL
Match: A0A5A7T9Z8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002870 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.6e-18
Identity = 70/170 (41.18%), Postives = 90/170 (52.94%), Query Frame = 0


Query: 79  LDMMASNNEEWDGDDFGNR------RGGRGRSEEGLDKNIVVALQGKMTAMNNPLKSMAR 138
           LD MAS + EW  D FG+R      RG RGR  + +D+N++V LQG++T MN  L+SMA 
Sbjct: 2   LDTMASKSWEWRDDGFGSRYDNRKNRGERGRLGDAMDRNVMVVLQGQVTKMNKLLQSMAL 61

Query: 139 SQ--------QLHIN----------------------------------------IPFID 195
           SQ        Q++ N                                        IPF++
Sbjct: 62  SQVNAAGSSIQMNKNIPNKEVENRIQEEQGNKASNQETSSNPFPPPPSWSLEEECIPFVN 121

[Close]

BLAST of PI0028521 vs. ExPASy TrEMBL
Match: A0A5D3BCZ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00470 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.0e-18
Identity = 70/170 (41.18%), Postives = 90/170 (52.94%), Query Frame = 0


Query: 79  LDMMASNNEEWDGDDFGNR------RGGRGRSEEGLDKNIVVALQGKMTAMNNPLKSMAR 138
           LD MAS + EW  D FG+R      RG RGR  + +D+N++V LQG++T MN  L+SMA 
Sbjct: 2   LDTMASKSWEWRDDGFGSRYDNRKNRGERGRLGDVMDRNVMVVLQGQVTKMNKLLQSMAL 61

Query: 139 SQ--------QLHIN----------------------------------------IPFID 195
           SQ        Q++ N                                        IPF++
Sbjct: 62  SQVNAAGSSIQMNKNILNKEVENRIQEEQGNKASNQETSSNPFPPPPSWSLEEECIPFVN 121

[Close]

BLAST of PI0028521 vs. ExPASy TrEMBL
Match: A0A1S4E2V6 (uncharacterized protein LOC107991723 OS=Cucumis melo OX=3656 GN=LOC107991723 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 110 KNIVVALQGKMTAMNNPLKSMARSQQLHINIPFIDGLEQMSSYVKFLQDILAKKRRMNDC 169
           +N +VALQG++  MN  LKSMA S QLHINI F+D L QM SYVKFL+DILAKK R+ND 
Sbjct: 18  ENTMVALQGQVAKMNKLLKSMALS-QLHINISFVDVLGQMPSYVKFLKDILAKKSRLNDF 77

Query: 170 ETVALTQATSNVFKNGVPGE--DDRSW 195
           +TVAL Q TS+VF+NGVP +  D RS+
Sbjct: 78  QTVALMQETSDVFRNGVPRKMTDPRSF 103

[Close]

BLAST of PI0028521 vs. ExPASy TrEMBL
Match: A0A5A7TRQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2741G00190 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-15
Identity = 60/134 (44.78%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 88  EWDGDDFG---NRRGGRGRS---EEGLDKNIVVALQGKMTAMNNPLKSM----------- 147
           EW  D FG     RG RG +   +EG+D+N  V LQGK+  MN  L+SM           
Sbjct: 33  EWRDDGFGLLKENRGNRGNTDKIDEGVDRNTTVVLQGKVNEMNKLLQSMVLAQNNNVLNM 92

Query: 148 ----ARSQQLHINI-------------PFIDGLEQMSSYVKFLQDILAKKRRMNDCETVA 188
                R  + H  +             PF   LE+M SYVKFL+DIL KKRR+N+CETV 
Sbjct: 93  QMESTRRDEQHDKVSTKVTSSNPLYPPPF---LEKMPSYVKFLKDILVKKRRINECETVD 152

[Close]

BLAST of PI0028521 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.2e-14
Identity = 47/88 (53.41%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 66  GMLKSSYNQINATLDMMASNNEEWDGDDFGNRRGGRGRSEEGLDKNIVVALQGKMTAMNN 125
           GML+SSYNQI ATLD M++N++EWD   FG+R   RGR++EGLDK++VV LQG+M AMNN
Sbjct: 58  GMLRSSYNQIKATLDSMSNNSQEWDDIGFGSRH--RGRTKEGLDKSVVVVLQGQMIAMNN 117

Query: 126 PLKSMARSQQLHINIPFIDGLEQMSSYV 154
            L+SM  SQ    N  +I  ++Q++ ++
Sbjct: 118 LLQSMTLSQVNAAN-NYIHAVKQVNKFI 142

[Close]

BLAST of PI0028521 vs. NCBI nr
Match: KAA0038397.1 (hypothetical protein E6C27_scaffold270G002870 [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 7.4e-18
Identity = 70/170 (41.18%), Postives = 90/170 (52.94%), Query Frame = 0


Query: 79  LDMMASNNEEWDGDDFGNR------RGGRGRSEEGLDKNIVVALQGKMTAMNNPLKSMAR 138
           LD MAS + EW  D FG+R      RG RGR  + +D+N++V LQG++T MN  L+SMA 
Sbjct: 2   LDTMASKSWEWRDDGFGSRYDNRKNRGERGRLGDAMDRNVMVVLQGQVTKMNKLLQSMAL 61

Query: 139 SQ--------QLHIN----------------------------------------IPFID 195
           SQ        Q++ N                                        IPF++
Sbjct: 62  SQVNAAGSSIQMNKNIPNKEVENRIQEEQGNKASNQETSSNPFPPPPSWSLEEECIPFVN 121

[Close]

BLAST of PI0028521 vs. NCBI nr
Match: TYJ96997.1 (hypothetical protein E5676_scaffold506G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-17
Identity = 70/170 (41.18%), Postives = 90/170 (52.94%), Query Frame = 0


Query: 79  LDMMASNNEEWDGDDFGNR------RGGRGRSEEGLDKNIVVALQGKMTAMNNPLKSMAR 138
           LD MAS + EW  D FG+R      RG RGR  + +D+N++V LQG++T MN  L+SMA 
Sbjct: 2   LDTMASKSWEWRDDGFGSRYDNRKNRGERGRLGDVMDRNVMVVLQGQVTKMNKLLQSMAL 61

Query: 139 SQ--------QLHIN----------------------------------------IPFID 195
           SQ        Q++ N                                        IPF++
Sbjct: 62  SQVNAAGSSIQMNKNILNKEVENRIQEEQGNKASNQETSSNPFPPPPSWSLEEECIPFVN 121

[Close]

BLAST of PI0028521 vs. NCBI nr
Match: XP_016902557.1 (PREDICTED: uncharacterized protein LOC107991723 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-17
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 110 KNIVVALQGKMTAMNNPLKSMARSQQLHINIPFIDGLEQMSSYVKFLQDILAKKRRMNDC 169
           +N +VALQG++  MN  LKSMA S QLHINI F+D L QM SYVKFL+DILAKK R+ND 
Sbjct: 18  ENTMVALQGQVAKMNKLLKSMALS-QLHINISFVDVLGQMPSYVKFLKDILAKKSRLNDF 77

Query: 170 ETVALTQATSNVFKNGVPGE--DDRSW 195
           +TVAL Q TS+VF+NGVP +  D RS+
Sbjct: 78  QTVALMQETSDVFRNGVPRKMTDPRSF 103

[Close]

BLAST of PI0028521 vs. NCBI nr
Match: KAA0044261.1 (uncharacterized protein E6C27_scaffold2741G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-14
Identity = 60/134 (44.78%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 88  EWDGDDFG---NRRGGRGRS---EEGLDKNIVVALQGKMTAMNNPLKSM----------- 147
           EW  D FG     RG RG +   +EG+D+N  V LQGK+  MN  L+SM           
Sbjct: 33  EWRDDGFGLLKENRGNRGNTDKIDEGVDRNTTVVLQGKVNEMNKLLQSMVLAQNNNVLNM 92

Query: 148 ----ARSQQLHINI-------------PFIDGLEQMSSYVKFLQDILAKKRRMNDCETVA 188
                R  + H  +             PF   LE+M SYVKFL+DIL KKRR+N+CETV 
Sbjct: 93  QMESTRRDEQHDKVSTKVTSSNPLYPPPF---LEKMPSYVKFLKDILVKKRRINECETVD 152

[Close]

BLAST of PI0028521 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-13
Identity = 47/88 (53.41%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 66  GMLKSSYNQINATLDMMASNNEEWDGDDFGNRRGGRGRSEEGLDKNIVVALQGKMTAMNN 125
           GML+SSYNQI ATLD M++N++EWD   FG+R   RGR++EGLDK++VV LQG+M AMNN
Sbjct: 58  GMLRSSYNQIKATLDSMSNNSQEWDDIGFGSRH--RGRTKEGLDKSVVVVLQGQMIAMNN 117

Query: 126 PLKSMARSQQLHINIPFIDGLEQMSSYV 154
            L+SM  SQ    N  +I  ++Q++ ++
Sbjct: 118 LLQSMTLSQVNAAN-NYIHAVKQVNKFI 142

The following BLAST results are available for this feature:

BLAST of PI0028521 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028521 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9Z8	3.6e-18	41.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BCZ6	8.0e-18	41.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E2V6	1.0e-17	64.37	uncharacterized protein LOC107991723 OS=Cucumis melo OX=3656 GN=LOC107991723 PE=...	[more]
A0A5A7TRQ0	6.4e-15	44.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0K6F9	9.2e-14	53.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1	[more]

BLAST of PI0028521 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038397.1	7.4e-18	41.18	hypothetical protein E6C27_scaffold270G002870 [Cucumis melo var. makuwa]	[more]
TYJ96997.1	1.7e-17	41.18	hypothetical protein E5676_scaffold506G00470 [Cucumis melo var. makuwa]	[more]
XP_016902557.1	2.2e-17	64.37	PREDICTED: uncharacterized protein LOC107991723 [Cucumis melo]	[more]
KAA0044261.1	1.3e-14	44.78	uncharacterized protein E6C27_scaffold2741G00190 [Cucumis melo var. makuwa]	[more]
KGN44484.1	1.9e-13	53.41	hypothetical protein Csa_015918 [Cucumis sativus]	[more]

BLAST of PI0028521 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028521.1	PI0028521.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0016779	nucleotidyltransferase activity