PI0028300 (gene) Melon (PI 482460) v1

Overview


Name	PI0028300
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Structural maintenance of chromosomes protein
Location	chr07: 15872455 .. 15874127 (-)
RNA-Seq Expression	PI0028300
Synteny	PI0028300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCATGACCAGAGCTTCGCGAAATACTTCATCTGCAGAAGTATACCTCTCTTGCCGCATAACATAATTCGTTCGCCAGCTCACCAAATCAAGCTCCTACTTAAATGCATGCAACCTCCATCAGCTCGCACCCAGCTCGCAGAACGCATCTCACCTGTTCAGCTCACAACCTTCAGCTTGCCTAAAAATGGTTACCTCAACCGTTCAAGCCCAAGCCCACGGCCCAAGCCCATTGTAACAAAATAACCGCCAAATAGCAGTTATTTTACAGATTTAGCCTTCAGTAGAAACCTATAAATACCCCATTGTAATTCAATTCAATTAACTTTGAGTTTCATGCTAAATTCTTAATACAAAGTCTATAGAATTTTCTCTTTACTTTTATCCTTGCAAAATAAAATTTCCTTACCCTTACTATGCAAAATTCTCTTTAGAAATTCCTTTATGCAAAAGTACCAAGCCAAGGTCAGTCGGGCATGCTTGGGGTTTTATCTTTTATCCACCGAATTCCCAAAGAGTTATTTTTTCTGGTAAGAAGAGTTAATTTCCTCGCGTACTTCGAAAGGTAAAGAAATCCCTTCCGCGTTCTAATTTTCGATCGTGTAATGCCTCTTTGCGATTATCCCGAATTGCATGCTGTCTAAATTTCTAGGCCTTAGACAAATTGCGTTATAATTCCTCATTAATAATTGAGCGCTGAGCCATTGTTAAATCGCATTCTGCTTGTTATGCTTTATCGCCGAATAGCCAGTTAATAAAACTATCTCGCCTTTCTCGCATAACAATACTGCCTTACACTTTAATTTTGTTAAGTATACGCTGAGTTGCTTAGCAAATCTTGATCATTTTATGCGTTTTGAATAGATAACCTCTTATCGCCTAGCAAACGTAGAATTGCTTAGCAAACGGTACTTGATCGAACTCATCGAATTTTCCTAAAATCTCCACGACCCACACTCTTCGAGTTCTCCTTCTCTTTTTCGGTCTTCTTCACACTCTTCGTACCATAACCATTTAGATTTAGTGGCAAATGAAGGTTTTCGACTCCCCGATTCTTCTTCACATTGTCTTTTTGGTTCACTTTTTTTTTAATTTATTCAGTTTTTTTACAAATTTTTTGGGTTTTTGATTTTGATGGTGGTGGGGATCAAGTGTTGGCGAGGAAGAAAAGTAGAATTTTCATTTGTGTCCTAATTGAATTCTTTAGTATATAAATTTCTTCATGAGGATTGGAAACTCATACCCATCGACATGAGCAGTAGTCTTTGATATTTATGCATTGAACCTTTTTTAAAAGATATTGTGCAAAACCTATTATTTAGTTATCCTCAAAACATGTTCTTAATTATTAAAACTTGACAATCTGAGGTTTGTGCGTTCTTTGTTATACTACTTTTTTGGGTATAGTTTTATCTTCTTTTACTTAATTTATCTTACAGACAGACAAAAAAATTACTAAACTTCTTTTAGGGCAGCAGAAACTTGATGCCAAGTTAGGTCATGATAAATCAGAATTGGAACAGCTTAAGCAGGACATTGGTAATGCTCAGAAGCAAAAACAATCAATTTCCAAGGCTCGTTTGAATAAGGTATCTTTAGGACTAGTTCTAGGTAACTTATTAATCTACTCTTATTCCTGTATGCAGGAAAAATCACTTGCTGACGTTTAG

mRNA sequence

ATGCTTCATGACCAGAGCTTCGCGAAATACTTCATCTGCAGAAGTATACCTCTCTTGCCGCATAACATAATTCGTTCGCCAGCTCACCAAATCAAGCTCCTACTTAAATGCATGCAACCTCCATCAGCTCGCACCCAGCTCGCAGAACGCATCTCACCTGTTCAGCTCACAACCTTCAGCTTGCCTAAAAATGGTTACCTCAACCGTTCAAGCCCAAGCCCACGGCCCAAGCCCATTACAGACAAAAAAATTACTAAACTTCTTTTAGGGCAGCAGAAACTTGATGCCAAGTTAGGTCATGATAAATCAGAATTGGAACAGCTTAAGCAGGACATTGGTAATGCTCAGAAGCAAAAACAATCAATTTCCAAGGCTCGTTTGAATAAGGAAAAATCACTTGCTGACGTTTAG

Coding sequence (CDS)

ATGCTTCATGACCAGAGCTTCGCGAAATACTTCATCTGCAGAAGTATACCTCTCTTGCCGCATAACATAATTCGTTCGCCAGCTCACCAAATCAAGCTCCTACTTAAATGCATGCAACCTCCATCAGCTCGCACCCAGCTCGCAGAACGCATCTCACCTGTTCAGCTCACAACCTTCAGCTTGCCTAAAAATGGTTACCTCAACCGTTCAAGCCCAAGCCCACGGCCCAAGCCCATTACAGACAAAAAAATTACTAAACTTCTTTTAGGGCAGCAGAAACTTGATGCCAAGTTAGGTCATGATAAATCAGAATTGGAACAGCTTAAGCAGGACATTGGTAATGCTCAGAAGCAAAAACAATCAATTTCCAAGGCTCGTTTGAATAAGGAAAAATCACTTGCTGACGTTTAG

Protein sequence

MLHDQSFAKYFICRSIPLLPHNIIRSPAHQIKLLLKCMQPPSARTQLAERISPVQLTTFSLPKNGYLNRSSPSPRPKPITDKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLADV

Homology

[Close]

BLAST of PI0028300 vs. ExPASy Swiss-Prot
Match: Q56YN8 (Structural maintenance of chromosomes protein 3 OS=Arabidopsis thaliana OX=3702 GN=SMC3 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 75  RPKPITDKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLA 134
           R   + D++IT+L+  QQ+L+A     K ++EQLKQ+I NA KQK +I KA   KEK L 
Sbjct: 692 RQLQVIDQQITQLVTEQQRLEADWTLCKLQVEQLKQEIANANKQKHAIHKAIEYKEKLLG 751

Query: 135 DV 137
           D+
Sbjct: 752 DI 753

[Close]

BLAST of PI0028300 vs. ExPASy TrEMBL
Match: A0A1S3BNL0 (Structural maintenance of chromosomes protein OS=Cucumis melo OX=3656 GN=LOC103491597 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.0e-15
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 81  DKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLADV 137
           D+KIT+L+  QQKLDAKLGHDKSELEQLKQDI NAQKQKQSISKARLNKEKSLADV
Sbjct: 698 DRKITELVSEQQKLDAKLGHDKSELEQLKQDIANAQKQKQSISKARLNKEKSLADV 753

[Close]

BLAST of PI0028300 vs. ExPASy TrEMBL
Match: A0A5A7TAH3 (Structural maintenance of chromosomes protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00430 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.0e-15
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 81  DKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLADV 137
           D+KIT+L+  QQKLDAKLGHDKSELEQLKQDI NAQKQKQSISKARLNKEKSLADV
Sbjct: 702 DRKITELVSEQQKLDAKLGHDKSELEQLKQDIANAQKQKQSISKARLNKEKSLADV 757

[Close]

BLAST of PI0028300 vs. ExPASy TrEMBL
Match: A0A0A0L0E5 (Structural maintenance of chromosomes protein OS=Cucumis sativus OX=3659 GN=Csa_4G279900 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.0e-15
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 81  DKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLADV 137
           D+KIT+L+  QQKLDAKLGHDKSELEQLKQDI NAQKQKQSISKARLNKEKSLADV
Sbjct: 722 DRKITELVSEQQKLDAKLGHDKSELEQLKQDIANAQKQKQSISKARLNKEKSLADV 777

[Close]

BLAST of PI0028300 vs. ExPASy TrEMBL
Match: A0A1S3BMX7 (structural maintenance of chromosomes protein 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491597 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.0e-15
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 81  DKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLADV 137
           D+KIT+L+  QQKLDAKLGHDKSELEQLKQDI NAQKQKQSISKARLNKEKSLADV
Sbjct: 584 DRKITELVSEQQKLDAKLGHDKSELEQLKQDIANAQKQKQSISKARLNKEKSLADV 639

[Close]

BLAST of PI0028300 vs. ExPASy TrEMBL
Match: A0A6J1JE08 (Structural maintenance of chromosomes protein OS=Cucurbita maxima OX=3661 GN=LOC111483677 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 81  DKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLADV 137
           D+KIT+L+  QQK+DAK GHDKSELEQLKQDI NAQKQKQSISKA LNKEKSLADV
Sbjct: 698 DRKITELVSEQQKIDAKQGHDKSELEQLKQDIANAQKQKQSISKALLNKEKSLADV 753

[Close]

BLAST of PI0028300 vs. NCBI nr
Match: XP_008449838.1 (PREDICTED: structural maintenance of chromosomes protein 3 isoform X2 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 81  DKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLADV 137
           D+KIT+L+  QQKLDAKLGHDKSELEQLKQDI NAQKQKQSISKARLNKEKSLADV
Sbjct: 584 DRKITELVSEQQKLDAKLGHDKSELEQLKQDIANAQKQKQSISKARLNKEKSLADV 639

[Close]

BLAST of PI0028300 vs. NCBI nr
Match: KAA0040073.1 (structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 81  DKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLADV 137
           D+KIT+L+  QQKLDAKLGHDKSELEQLKQDI NAQKQKQSISKARLNKEKSLADV
Sbjct: 702 DRKITELVSEQQKLDAKLGHDKSELEQLKQDIANAQKQKQSISKARLNKEKSLADV 757

[Close]

BLAST of PI0028300 vs. NCBI nr
Match: XP_011653545.1 (structural maintenance of chromosomes protein 3 isoform X1 [Cucumis sativus] >XP_011653546.1 structural maintenance of chromosomes protein 3 isoform X1 [Cucumis sativus] >XP_031740064.1 structural maintenance of chromosomes protein 3 isoform X1 [Cucumis sativus] >KGN54455.2 hypothetical protein Csa_018128 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 81  DKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLADV 137
           D+KIT+L+  QQKLDAKLGHDKSELEQLKQDI NAQKQKQSISKARLNKEKSLADV
Sbjct: 698 DRKITELVSEQQKLDAKLGHDKSELEQLKQDIANAQKQKQSISKARLNKEKSLADV 753

[Close]

BLAST of PI0028300 vs. NCBI nr
Match: XP_008449833.1 (PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo] >XP_008449834.1 PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo] >XP_008449835.1 PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo] >XP_008449836.1 PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo] >XP_016900753.1 PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo] >XP_016900754.1 PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo] >XP_016900755.1 PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 81  DKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLADV 137
           D+KIT+L+  QQKLDAKLGHDKSELEQLKQDI NAQKQKQSISKARLNKEKSLADV
Sbjct: 698 DRKITELVSEQQKLDAKLGHDKSELEQLKQDIANAQKQKQSISKARLNKEKSLADV 753

[Close]

BLAST of PI0028300 vs. NCBI nr
Match: XP_031740065.1 (structural maintenance of chromosomes protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 81  DKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLADV 137
           D+KIT+L+  QQKLDAKLGHDKSELEQLKQDI NAQKQKQSISKARLNKEKSLADV
Sbjct: 577 DRKITELVSEQQKLDAKLGHDKSELEQLKQDIANAQKQKQSISKARLNKEKSLADV 632

[Close]

BLAST of PI0028300 vs. TAIR 10
Match: AT2G27170.1 (Structural maintenance of chromosomes (SMC) family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 75  RPKPITDKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLA 134
           R   + D++IT+L+  QQ+L+A     K ++EQLKQ+I NA KQK +I KA   KEK L 
Sbjct: 692 RQLQVIDQQITQLVTEQQRLEADWTLCKLQVEQLKQEIANANKQKHAIHKAIEYKEKLLG 751

Query: 135 DV 137
           D+
Sbjct: 752 DI 753

[Close]

BLAST of PI0028300 vs. TAIR 10
Match: AT2G27170.2 (Structural maintenance of chromosomes (SMC) family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 75  RPKPITDKKITKLLLGQQKLDAKLGHDKSELEQLKQDIGNAQKQKQSISKARLNKEKSLA 134
           R   + D++IT+L+  QQ+L+A     K ++EQLKQ+I NA KQK +I KA   KEK L 
Sbjct: 692 RQLQVIDQQITQLVTEQQRLEADWTLCKLQVEQLKQEIANANKQKHAIHKAIEYKEKLLG 751

Query: 135 DV 137
           D+
Sbjct: 752 DI 753

The following BLAST results are available for this feature:

BLAST of PI0028300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56YN8	2.0e-04	46.77	Structural maintenance of chromosomes protein 3 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of PI0028300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNL0	2.0e-15	89.29	Structural maintenance of chromosomes protein OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5A7TAH3	2.0e-15	89.29	Structural maintenance of chromosomes protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A0A0L0E5	2.0e-15	89.29	Structural maintenance of chromosomes protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A1S3BMX7	2.0e-15	89.29	structural maintenance of chromosomes protein 3 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A6J1JE08	1.1e-13	83.93	Structural maintenance of chromosomes protein OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of PI0028300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449838.1	4.1e-15	89.29	PREDICTED: structural maintenance of chromosomes protein 3 isoform X2 [Cucumis m...	[more]
KAA0040073.1	4.1e-15	89.29	structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo var. ma...	[more]
XP_011653545.1	4.1e-15	89.29	structural maintenance of chromosomes protein 3 isoform X1 [Cucumis sativus] >XP...	[more]
XP_008449833.1	4.1e-15	89.29	PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis m...	[more]
XP_031740065.1	4.1e-15	89.29	structural maintenance of chromosomes protein 3 isoform X2 [Cucumis sativus]	[more]

BLAST of PI0028300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27170.1	1.4e-05	46.77	Structural maintenance of chromosomes (SMC) family protein	[more]
AT2G27170.2	1.4e-05	46.77	Structural maintenance of chromosomes (SMC) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028300.1	PI0028300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0000819	sister chromatid segregation
cellular_component	GO:0005694	chromosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity