PI0028299 (gene) Melon (PI 482460) v1

Overview


Name	PI0028299
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	HMA domain-containing protein
Location	chr06: 28610119 .. 28613467 (+)
RNA-Seq Expression	PI0028299
Synteny	PI0028299

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTAATTAGAAAGAGAAACCCCAAAAACTTTGAAAAAAAAGAAAAAAAACAAAGTTAGGAATATTTTTCTCCCCATCTTTTTCACCAAATAAAAACCTCCATGGCTGCTTAAACACAAAGACAAAGAAGAAGAATAGAAGCCAAAAAATGAAGCAATCTTTGTTATTTTCTGAGAATCTAACACCCCCCAGGTAACAATATTTCTCAATTATATTATTATTTAGGGTTTAATACATGTTTTATGCAATATATTTTTGGTTATGAAAAGATATATGTAATAATTTTTGTGTGATATAGTTTGAAGTGATTGTTATAAATGCAAATATGAGTTGCAATGGATGTCGCCAAAGAGTTTCTCAAATTGTCTCTAAAATGTCAGGTTAGTATATTTTCATTATTTTTATTTATTCGCCTTCTTCCATTCTTCTTCTTCCCTTCGTTCTACGTATTTTAAAGAAATATTACAAAAATCATCTTTGAAATCGGCTGCTAGTTATAATTACATCTTCAAACTTTCAGTCGTAAAACCTTGGATCCTAGAACTTCTACGAATGTTAAAATTTTATATTCAAAATTACAATAATTGTTTAAATTAGACTCTCGGATGATAAAAATTGAATCATCAAACTTATATAATTGTTACAATTTTTTCAATTATGTAAGTTTGACGATCTAATTTTAATGCTGGTATAAATTTGAGGCTCGGTTTTTTACTATAAAAAGTTTAAGAGTATAATTACAATAATATCCTACCTTAGAGTCTATTTTTGCAATTTGCCTTATTTAAAATATAATATCTATTTTTTTCCCTTTCTAACAGGACCAAATTTCTAATTAAAAAAAAAAAATCATCAACCTTCAATTACTCATTTTATGAATAATTAAGCATTTTCATGTAATAATATATTTTTGGCACATTGATTTGTTTAGTCGTTTTTGTTGTGGTTTATTTTAATCAAAATTATAATATAAATGAATTGAAAGATTCAAATTTCAAATCTCCGGATCGGAACATATAGTTTAGTAGGTACTATTCTTAAATTTGTTGTTTAGTTGTTTGTTATATAGTGTACCAATTCGGTTAAAATTTGTATTATTGGCATTATTACATTTATATTTTATTAACATGTTGTTAAAAGTAGAGTTGTTCTCAAACATAGCAAAATATTTATAAAATATAACAAATTATCACAATCTATCTACTATCTATGTCTATCATGACACAAATAGAGAAAGTAGTCTATCTTGATTTATTGTGGTTTATTACCATAGATTATGATATTTTGCTATATTTGTATATATTTTCAAAAATTTTGTTATTTAAAATAATTTACCTTAAAATATAGACTTGATTGAAGTGTTGTATAAAGTTCAAGAACGTAATTTAAACTCGTGAAGTTTATACAAAACATGAAAGGATTCTAACCTTTTTAACTCCTTATTCAATGACACACATGTGTTTTCTTTATTCTATAATAATTTTTTAATTAGAACTATCACATATAATAAGTAATAACTTTGCCTTATTCTATAATCATTTTTAATTACAACTCTCACATACTATTTTTTCGCAAAAAAAATTGTGAAAAGATCATAAGGTTGATGCATACATATTTCTTATGTGTGTATGATACCCACTGCTTAATGTATAGTGGTGACAAATAATGTCCCACATGTAATTTTTCAATTTTTTTTTGTTAATACAACAAGCGAAAATGAAAGATCAAATTAAACCTCAAATCTTAAGGAGAAATGTTATGTCAATTGATCAATTAAACTTACTTTAGTATGCCACATGACACATATAATTAAAAAGGTATAAGTAAAATTTAAAATACTTTTTTTGGTATAAACAAATGAGAGTTAAGATTTGAACTTGTAAAAGTAAGGTAGTACCTTGATTGTCATTGAGTTATGTTTACTTTAATAAAGTAAATGACAACATTTCCATAAGATATAAGACATTTTAAATAAAACTTAAAGAAAAATCTATATAGGTCTAACGTCTTAAACTTAAAACAGTTATATTAGTTCGTTATGAAAATGATTCAGAAATTATAATTTTCGAGACTAAAGTCATGTACTAGCTTCTTCGATCAAGTGTATAACAAAAATGTTATAAAAATCTCGAAAACGATGTGTGATCTATCATTAGGTGATGTCGTGATGGCTAAAGAGGCTTGGTGATTGTTTGAGGATTATTGAGAAAATAGACAATATCTCACACATTGACTTAAAGAAAGAAACACCATAAACATATGACATTGACATGTATCCATTCGTATATCAAAGTGGGCAATACAACATGGACGCTTTAGAATTTAGTTATATGTATAATGAACTAAAAAGAAAGACATGTATTTCTACTGAAGAAGAATGAATCGTCTAGATAGAAGAAAATTCTCGGTGCGATCATGAATAAATTACATTATATTGAATCGAGTTGTAGTACTTCTTTGATTAGAAAGAGTTATAGAAAATAAACGTAAACCTAGATAAAAAGAGATGTACCTCGATTATAGTATAAAATGAGCGAAAGATTTTTCATGATAGTCATAGTAAAAGAATGCAAAATATTTGCAAATATAATAAACTTTAAATTAAACTAGAAATAGTTAAGGGCTCTTTTGGATTGACTTAAGAAAAAATGCTTTTCAAGAAATTCATTTTTATTTAAACTCTTTTCGTAAAGATTGTTAGACATACACTTCACAAACTATTTTAATTGGCTACCCAATACTCTCATTTTCTCTCAAATGATTTATTTTTTAAATTAAACACATAAAAAATTATTCCAAACACACTTTAAGTAAACTCGAAATGAACAATATCATGATTGTTCTTTTTATTTTATTTTTTTTCTTTTCCACTTTTACTTACCTATCAATTTCAAATTTTAACAAAATTCTTAGTTATATTTTCTCTTTTAAACTATATATATACATAAACTTACAAATTTATTTACTTAAAACAACTTATTATATGAAGTAATTGTTCTTACATTTATTTGACCCTTTTGGAAGTCTATGCTTGATTTCTAAACTTTTTTTTTTTTTTTTTTTTTTTGGTTAATATGCAGAATTAGTGGAATTGTCTATAGATGTGACAAAAAAACAAGTGACTGTTAAAGGAAATGTCAAATGCCAAAGCAAGAATCAAGAAAATACTATTCATTCCCAAATGAAGAAGTGTAATTCTTTAAAATCTATCTCCCCCCATTTTCCAAATAATTGCTTTTAAATTAATTCTTTTCTATCATTATTTTATTAAGCAACATATATAATTTTTATTTTATTAAGCGACATATATAATTTTTATTTTATTAAGCAACATATATAATTTTTATTT

mRNA sequence

GCCTAATTAGAAAGAGAAACCCCAAAAACTTTGAAAAAAAAGAAAAAAAACAAAGTTAGGAATATTTTTCTCCCCATCTTTTTCACCAAATAAAAACCTCCATGGCTGCTTAAACACAAAGACAAAGAAGAAGAATAGAAGCCAAAAAATGAAGCAATCTTTGTTATTTTCTGAGAATCTAACACCCCCCAGGTAACAATATTTCTCAATTATATTATTATTTAGGGTTTAATACATGTTTTATGCAATATATTTTTGGTTATGAAAAGATATATGTAATAATTTTTGTGTGATATAGTTTGAAGTGATTGTTATAAATGCAAATATGAGTTGCAATGGATGTCGCCAAAGAGTTTCTCAAATTGTCTCTAAAATGTCAGAATTAGTGGAATTGTCTATAGATGTGACAAAAAAACAAGTGACTGTTAAAGGAAATGTCAAATGCCAAAGCAAGAATCAAGAAAATACTATTCATTCCCAAATGAAGAAGTGTAATTCTTTAAAATCTATCTCCCCCCATTTTCCAAATAATTGCTTTTAAATTAATTCTTTTCTATCATTATTTTATTAAGCAACATATATAATTTTTATTTTATTAAGCGACATATATAATTTTTATTTTATTAAGCAACATATATAATTTTTATTT

Coding sequence (CDS)

ATGAGTTGCAATGGATGTCGCCAAAGAGTTTCTCAAATTGTCTCTAAAATGTCAGAATTAGTGGAATTGTCTATAGATGTGACAAAAAAACAAGTGACTGTTAAAGGAAATGTCAAATGCCAAAGCAAGAATCAAGAAAATACTATTCATTCCCAAATGAAGAAGTGTAATTCTTTAAAATCTATCTCCCCCCATTTTCCAAATAATTGCTTTTAA

Protein sequence

MSCNGCRQRVSQIVSKMSELVELSIDVTKKQVTVKGNVKCQSKNQENTIHSQMKKCNSLKSISPHFPNNCF

Homology

[Close]

BLAST of PI0028299 vs. ExPASy TrEMBL
Match: A0A0A0L6W5 (HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G020590 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MSCNGCRQRVSQIVSKMSELVELSIDVTKKQVTVKGNVKCQSKNQENTIHSQMKKCNSLK 60
          MSCNGCRQRVSQIVSKMSEL EL+IDVTKKQV VKGNVKCQSKNQENTIHSQM  C+SLK
Sbjct: 26 MSCNGCRQRVSQIVSKMSELAELTIDVTKKQVIVKGNVKCQSKNQENTIHSQMNNCDSLK 85

Query: 61 SISPHFPNNCF 72
          S SPHF N+CF
Sbjct: 86 SPSPHFSNSCF 96

[Close]

BLAST of PI0028299 vs. ExPASy TrEMBL
Match: A0A6J1HN60 (uncharacterized protein LOC111465148 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465148 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.8e-15
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MSCNGCRQRVSQIVSKMSELVELSIDVTKKQVTVKGNVKCQSK-NQENTIHSQMKKCNSL 60
          MSCNGCRQRVSQ++SK+SELVE +IDVTKKQV VKGNVK Q K ++E++IHSQ    NSL
Sbjct: 23 MSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEEDSIHSQTYNSNSL 82

Query: 61 K--SISPHFPNNCF 72
          K  S+S  + N+CF
Sbjct: 83 KSQSLSHQYSNDCF 96

[Close]

BLAST of PI0028299 vs. ExPASy TrEMBL
Match: A0A6J1HQF9 (uncharacterized protein LOC111465148 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465148 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.8e-15
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MSCNGCRQRVSQIVSKMSELVELSIDVTKKQVTVKGNVKCQSK-NQENTIHSQMKKCNSL 60
          MSCNGCRQRVSQ++SK+SELVE +IDVTKKQV VKGNVK Q K ++E++IHSQ    NSL
Sbjct: 25 MSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEEDSIHSQTYNSNSL 84

Query: 61 K--SISPHFPNNCF 72
          K  S+S  + N+CF
Sbjct: 85 KSQSLSHQYSNDCF 98

[Close]

BLAST of PI0028299 vs. ExPASy TrEMBL
Match: A0A6J1DJ58 (uncharacterized protein LOC111021388 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021388 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.7e-14
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1  MSCNGCRQRVSQIVSKMSELVELSIDVTKKQVTVKGNVKCQSKNQENTIHSQMKKCNSLK 60
          M CN CRQRVSQ++SKMSEL+E++IDVTK QV VKGN+K QSK +E  +H    K  SLK
Sbjct: 25 MGCNRCRQRVSQLLSKMSELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVKGGSLK 84

Query: 61 SISPHFPNNCF 72
          SIS    N+CF
Sbjct: 85 SISLELSNHCF 95

[Close]

BLAST of PI0028299 vs. ExPASy TrEMBL
Match: A0A6J1DKV3 (uncharacterized protein LOC111021388 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021388 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.7e-14
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1  MSCNGCRQRVSQIVSKMSELVELSIDVTKKQVTVKGNVKCQSKNQENTIHSQMKKCNSLK 60
          M CN CRQRVSQ++SKMSEL+E++IDVTK QV VKGN+K QSK +E  +H    K  SLK
Sbjct: 23 MGCNRCRQRVSQLLSKMSELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVKGGSLK 82

Query: 61 SISPHFPNNCF 72
          SIS    N+CF
Sbjct: 83 SISLELSNHCF 93

[Close]

BLAST of PI0028299 vs. NCBI nr
Match: KGN55871.1 (hypothetical protein Csa_010412 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MSCNGCRQRVSQIVSKMSELVELSIDVTKKQVTVKGNVKCQSKNQENTIHSQMKKCNSLK 60
          MSCNGCRQRVSQIVSKMSEL EL+IDVTKKQV VKGNVKCQSKNQENTIHSQM  C+SLK
Sbjct: 26 MSCNGCRQRVSQIVSKMSELAELTIDVTKKQVIVKGNVKCQSKNQENTIHSQMNNCDSLK 85

Query: 61 SISPHFPNNCF 72
          S SPHF N+CF
Sbjct: 86 SPSPHFSNSCF 96

[Close]

BLAST of PI0028299 vs. NCBI nr
Match: XP_038903445.1 (copper transport protein ATX1 [Benincasa hispida])

HSP 1 Score: 106.7 bits (265), Expect = 8.5e-20
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MSCNGCRQRVSQIVSKMSELVELSIDVTKKQVTVKGNVKCQSKNQENTIHSQMKKCNSLK 60
          MSC GCRQRVSQIV KMSELVE +IDVTK+QV VKGNVKCQSKN+ENT    MKKCNSLK
Sbjct: 25 MSCKGCRQRVSQIVCKMSELVEFTIDVTKRQVIVKGNVKCQSKNEENT----MKKCNSLK 84

Query: 61 SISPHFPNNCF 72
          S SP F N CF
Sbjct: 85 SPSPQFSNKCF 91

[Close]

BLAST of PI0028299 vs. NCBI nr
Match: XP_022965235.1 (uncharacterized protein LOC111465148 isoform X2 [Cucurbita maxima])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MSCNGCRQRVSQIVSKMSELVELSIDVTKKQVTVKGNVKCQSK-NQENTIHSQMKKCNSL 60
          MSCNGCRQRVSQ++SK+SELVE +IDVTKKQV VKGNVK Q K ++E++IHSQ    NSL
Sbjct: 23 MSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEEDSIHSQTYNSNSL 82

Query: 61 K--SISPHFPNNCF 72
          K  S+S  + N+CF
Sbjct: 83 KSQSLSHQYSNDCF 96

[Close]

BLAST of PI0028299 vs. NCBI nr
Match: XP_023553457.1 (uncharacterized protein LOC111810871 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 1  MSCNGCRQRVSQIVSKMSELVELSIDVTKKQVTVKGNVKCQSK-NQENTIHSQMKKCNSL 60
          MSCNGCRQRVSQ++SK+SELVE +IDVTKKQV VKGNVK Q K ++EN +HSQ     SL
Sbjct: 25 MSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQTYNSKSL 84

Query: 61 K--SISPHFPNNCF 72
          K  S++  F NNCF
Sbjct: 85 KSQSLTHQFSNNCF 98

[Close]

BLAST of PI0028299 vs. NCBI nr
Match: XP_022965234.1 (uncharacterized protein LOC111465148 isoform X1 [Cucurbita maxima])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MSCNGCRQRVSQIVSKMSELVELSIDVTKKQVTVKGNVKCQSK-NQENTIHSQMKKCNSL 60
          MSCNGCRQRVSQ++SK+SELVE +IDVTKKQV VKGNVK Q K ++E++IHSQ    NSL
Sbjct: 25 MSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEEDSIHSQTYNSNSL 84

Query: 61 K--SISPHFPNNCF 72
          K  S+S  + N+CF
Sbjct: 85 KSQSLSHQYSNDCF 98

The following BLAST results are available for this feature:

BLAST of PI0028299 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028299 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6W5	1.5e-25	87.32	HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G020590 PE=4 SV...	[more]
A0A6J1HN60	8.8e-15	66.22	uncharacterized protein LOC111465148 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HQF9	8.8e-15	66.22	uncharacterized protein LOC111465148 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DJ58	5.7e-14	61.97	uncharacterized protein LOC111021388 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DKV3	5.7e-14	61.97	uncharacterized protein LOC111021388 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of PI0028299 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55871.1	3.0e-25	87.32	hypothetical protein Csa_010412 [Cucumis sativus]	[more]
XP_038903445.1	8.5e-20	78.87	copper transport protein ATX1 [Benincasa hispida]	[more]
XP_022965235.1	1.8e-14	66.22	uncharacterized protein LOC111465148 isoform X2 [Cucurbita maxima]	[more]
XP_023553457.1	1.8e-14	66.22	uncharacterized protein LOC111810871 [Cucurbita pepo subsp. pepo]	[more]
XP_022965234.1	1.8e-14	66.22	uncharacterized protein LOC111465148 isoform X1 [Cucurbita maxima]	[more]

BLAST of PI0028299 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 1..56 e-value: 3.9E-7 score: 30.4
IPR006121	Heavy metal-associated domain, HMA	PROSITE	PS50846	HMA_2	coord: 1..34 score: 8.762999
IPR006121	Heavy metal-associated domain, HMA	CDD	cd00371	HMA	coord: 1..39 e-value: 0.00333932 score: 30.6517
None	No IPR available	GENE3D	3.30.70.100		coord: 1..62 e-value: 6.0E-7 score: 31.6
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 1..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028299.2	PI0028299.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding