Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAATGTCCTCCTTCCTCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCTAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCTGTATAAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCCTGCTGTTGCTGCTAAGGGCAAGGGGAAGGCTAAGGTAGCCGACAAGGGGAAGTGCTTCCACTGCAATATGGATGGACATTGGAAGAGAAACTGCCCCAAGTACCTTGCTGAGAAGAAGAAGGAAAAAGAAGAAAACTAGTTCCTTTCAGCAGCTCGAGGAGGGTGAAATGACGCTCAAGTTGGAATGGGAGACGCCATTTCAGCTTGTGCAGTGGGAGATGTGA
mRNA sequence
ATGGAGGAATGTCCTCCTTCCTCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCCTGCTGTTGCTGCTAAGGGCAAGGGGAAGGCTAAGCAGCTCGAGGAGGGTGAAATGACGCTCAAGTTGGAATGGGAGACGCCATTTCAGCTTGTGCAGTGGGAGATGTGA
Coding sequence (CDS)
ATGGAGGAATGTCCTCCTTCCTCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCCTGCTGTTGCTGCTAAGGGCAAGGGGAAGGCTAAGCAGCTCGAGGAGGGTGAAATGACGCTCAAGTTGGAATGGGAGACGCCATTTCAGCTTGTGCAGTGGGAGATGTGA
Protein sequence
MEECPPSSVRNASQTVRDAHDRWTKANEKARVYILASQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGPAVAAKGKGKAKQLEEGEMTLKLEWETPFQLVQWEM
Homology
BLAST of PI0028125 vs. ExPASy TrEMBL
Match:
A0A5D3BE74 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00490 PE=4 SV=1)
HSP 1 Score: 191.0 bits (484), Expect = 4.5e-45
Identity = 128/227 (56.39%), Postives = 148/227 (65.20%), Query Frame = 0
Query: 1 MEECPPSSVRNASQTVRDAHDRWTKANEKARVYILAS----------------------- 60
+EECP NA++TVR+A++RW KANEKAR YILAS
Sbjct: 40 VEECPQVPAANATRTVREAYERWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNE 99
Query: 61 -QSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTT 120
S+REHVL+MMV FN+AE N AVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT
Sbjct: 100 GASIREHVLNMMVHFNMAEMNEAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTT 159
Query: 121 LLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG- 180
LLNELQTF+SLMK KGQK GEANVA S ++F +GS SGTKS P SS KK +KKKGG+G
Sbjct: 160 LLNELQTFESLMKIKGQK-GEANVATSTRKFYRGSISGTKSMPYSSDNKKSKKKKGGQGN 219
BLAST of PI0028125 vs. ExPASy TrEMBL
Match:
A0A5A7V5A8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G00150 PE=4 SV=1)
HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44
Identity = 121/194 (62.37%), Postives = 138/194 (71.13%), Query Frame = 0
Query: 1 MEECPPSSVRNASQTVRDAHDRWTKANEKARVYILAS----------------------- 60
+EECP NA++TVR+A++RW KANEKAR YILAS
Sbjct: 40 VEECPQVPAANATRTVREAYERWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNE 99
Query: 61 -QSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTT 120
S+REHVL+MMV FN+AE N AVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT
Sbjct: 100 GASIREHVLNMMVHFNMAEMNEAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTT 159
Query: 121 LLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG- 169
LLNELQTF+SLMK KGQK GEANVA S ++F +GS SGTKS P SS KK +KKKGG+G
Sbjct: 160 LLNELQTFESLMKIKGQK-GEANVATSTRKFYRGSISGTKSMPYSSDNKKSKKKKGGQGN 219
BLAST of PI0028125 vs. ExPASy TrEMBL
Match:
A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 2.2e-44
Identity = 125/219 (57.08%), Postives = 141/219 (64.38%), Query Frame = 0
Query: 1 MEECPPSSVRNASQTVRDAHDRWTKANEKARVYILAS----------------------- 60
+EECP NA++TVR+ ++RW KANEKAR YILAS
Sbjct: 40 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 --------------------------QSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 169
ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
BLAST of PI0028125 vs. ExPASy TrEMBL
Match:
A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 2.2e-44
Identity = 125/219 (57.08%), Postives = 141/219 (64.38%), Query Frame = 0
Query: 1 MEECPPSSVRNASQTVRDAHDRWTKANEKARVYILAS----------------------- 60
+EECP NA++TVR+ ++RW KANEKAR YILAS
Sbjct: 40 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 --------------------------QSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 169
ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
BLAST of PI0028125 vs. ExPASy TrEMBL
Match:
A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 2.2e-44
Identity = 125/219 (57.08%), Postives = 141/219 (64.38%), Query Frame = 0
Query: 1 MEECPPSSVRNASQTVRDAHDRWTKANEKARVYILAS----------------------- 60
+EECP NA++TVR+ ++RW KANEKAR YILAS
Sbjct: 40 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 --------------------------QSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 169
ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
BLAST of PI0028125 vs. NCBI nr
Match:
TYJ96755.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 191.0 bits (484), Expect = 9.2e-45
Identity = 128/227 (56.39%), Postives = 148/227 (65.20%), Query Frame = 0
Query: 1 MEECPPSSVRNASQTVRDAHDRWTKANEKARVYILAS----------------------- 60
+EECP NA++TVR+A++RW KANEKAR YILAS
Sbjct: 40 VEECPQVPAANATRTVREAYERWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNE 99
Query: 61 -QSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTT 120
S+REHVL+MMV FN+AE N AVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT
Sbjct: 100 GASIREHVLNMMVHFNMAEMNEAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTT 159
Query: 121 LLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG- 180
LLNELQTF+SLMK KGQK GEANVA S ++F +GS SGTKS P SS KK +KKKGG+G
Sbjct: 160 LLNELQTFESLMKIKGQK-GEANVATSTRKFYRGSISGTKSMPYSSDNKKSKKKKGGQGN 219
BLAST of PI0028125 vs. NCBI nr
Match:
KAA0062798.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 189.1 bits (479), Expect = 3.5e-44
Identity = 121/194 (62.37%), Postives = 138/194 (71.13%), Query Frame = 0
Query: 1 MEECPPSSVRNASQTVRDAHDRWTKANEKARVYILAS----------------------- 60
+EECP NA++TVR+A++RW KANEKAR YILAS
Sbjct: 40 VEECPQVPAANATRTVREAYERWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNE 99
Query: 61 -QSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTT 120
S+REHVL+MMV FN+AE N AVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TT
Sbjct: 100 GASIREHVLNMMVHFNMAEMNEAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTT 159
Query: 121 LLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG- 169
LLNELQTF+SLMK KGQK GEANVA S ++F +GS SGTKS P SS KK +KKKGG+G
Sbjct: 160 LLNELQTFESLMKIKGQK-GEANVATSTRKFYRGSISGTKSMPYSSDNKKSKKKKGGQGN 219
BLAST of PI0028125 vs. NCBI nr
Match:
KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 188.7 bits (478), Expect = 4.6e-44
Identity = 125/219 (57.08%), Postives = 141/219 (64.38%), Query Frame = 0
Query: 1 MEECPPSSVRNASQTVRDAHDRWTKANEKARVYILAS----------------------- 60
+EECP NA++TVR+ ++RW KANEKAR YILAS
Sbjct: 40 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 --------------------------QSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 169
ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
BLAST of PI0028125 vs. NCBI nr
Match:
KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 188.7 bits (478), Expect = 4.6e-44
Identity = 125/219 (57.08%), Postives = 141/219 (64.38%), Query Frame = 0
Query: 1 MEECPPSSVRNASQTVRDAHDRWTKANEKARVYILAS----------------------- 60
+EECP NA++TVR+ ++RW KANEKAR YILAS
Sbjct: 39 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 98
Query: 61 --------------------------QSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 99 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 158
Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 169
ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 159 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 218
BLAST of PI0028125 vs. NCBI nr
Match:
KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 188.7 bits (478), Expect = 4.6e-44
Identity = 125/219 (57.08%), Postives = 141/219 (64.38%), Query Frame = 0
Query: 1 MEECPPSSVRNASQTVRDAHDRWTKANEKARVYILAS----------------------- 60
+EECP NA++TVR+ ++RW KANEKAR YILAS
Sbjct: 40 VEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQ 99
Query: 61 --------------------------QSVREHVLDMMVQFNVAETNGAVIDEQSQVSFIL 120
SVREHVL+MMV FNVAE NGAVIDE SQVSFIL
Sbjct: 100 EMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFIL 159
Query: 121 ESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGS 169
ESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS
Sbjct: 160 ESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGS 219
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BE74 | 4.5e-45 | 56.39 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G0049... | [more] |
| A0A5A7V5A8 | 1.7e-44 | 62.37 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G0015... | [more] |
| A0A5A7SMH8 | 2.2e-44 | 57.08 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... | [more] |
| A0A5A7TU93 | 2.2e-44 | 57.08 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259... | [more] |
| A0A5A7TWB9 | 2.2e-44 | 57.08 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
