PI0028007 (gene) Melon (PI 482460) v1

Overview


Name	PI0028007
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr12: 15243950 .. 15244486 (+)
RNA-Seq Expression	PI0028007
Synteny	PI0028007

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGTCTTGGAGCCAGTTGATGACCCACTCCCCAAAGGAAAGACAATCACCTTTGAGGAAGCTGGTGACGCGAGCTCCCTTGCCACCTAAACAAACCGAAGATCAGCAAAGCGATGCGGCCGGTGAGAAAGAAGACGTTGATTTTTACAAGTTCATCAATGACGCGATTGGCAAACCAATGATCAATGGACTTGAAGACATTTTCCAAAATCAAGTAGATCTGCAAGAACGCGCGATGAGACATGAGAAGTAGATTCTGGACTTGGAATTGCAAATTGAGAATCATTATCAAGCACAGGATGATCATTTCGCCTATGAGATTGCGAGTTTAAAAGCACCAAACAAGGCGATGGTGAGTTTGATTAAGAAAGCATCACTGCGGTCTGACAGACAATACAAGTCAATGATGAATTACATCCATGCGGCAATTACGAGTCTCGTGCCTAAGCGTGCCATTCCGCTAGAATTTGAAGAAGCCCTATCTGACGTTGAATTGGACGCCGCACAAGGACCTTCCGACACGTGGCTATAA

mRNA sequence

ATGAAGATGTCTTGGAGCCAGTTGATGACCCACTCCCCAAAGGAAAGACAATCACCTTTGAGGAAGCTGGTGACGCGAGCTCCCTTGCCACCTAAACAAACCGAAGATCAGCAAAGCGATGCGGCCGGTGAGAAAGAAGACGTTGATTTTTACAAGTTCATCAATGACGCGATTGGCAAACCAATGATCAATGGACTTGAAGACATTTTCCAAAATCAAGATGATCATTTCGCCTATGAGATTGCGAGTTTAAAAGCACCAAACAAGGCGATGGTGAGTTTGATTAAGAAAGCATCACTGCGGTCTGACAGACAATACAAGTCAATGATGAATTACATCCATGCGGCAATTACGAGTCTCGTGCCTAAGCGTGCCATTCCGCTAGAATTTGAAGAAGCCCTATCTGACGTTGAATTGGACGCCGCACAAGGACCTTCCGACACGTGGCTATAA

Coding sequence (CDS)

ATGAAGATGTCTTGGAGCCAGTTGATGACCCACTCCCCAAAGGAAAGACAATCACCTTTGAGGAAGCTGGTGACGCGAGCTCCCTTGCCACCTAAACAAACCGAAGATCAGCAAAGCGATGCGGCCGGTGAGAAAGAAGACGTTGATTTTTACAAGTTCATCAATGACGCGATTGGCAAACCAATGATCAATGGACTTGAAGACATTTTCCAAAATCAAGATGATCATTTCGCCTATGAGATTGCGAGTTTAAAAGCACCAAACAAGGCGATGGTGAGTTTGATTAAGAAAGCATCACTGCGGTCTGACAGACAATACAAGTCAATGATGAATTACATCCATGCGGCAATTACGAGTCTCGTGCCTAAGCGTGCCATTCCGCTAGAATTTGAAGAAGCCCTATCTGACGTTGAATTGGACGCCGCACAAGGACCTTCCGACACGTGGCTATAA

Protein sequence

MKMSWSQLMTHSPKERQSPLRKLVTRAPLPPKQTEDQQSDAAGEKEDVDFYKFINDAIGKPMINGLEDIFQNQDDHFAYEIASLKAPNKAMVSLIKKASLRSDRQYKSMMNYIHAAITSLVPKRAIPLEFEEALSDVELDAAQGPSDTWL

Homology

[Close]

BLAST of PI0028007 vs. ExPASy TrEMBL
Match: A0A5A7U0L9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00960 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.3e-06
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 25 TRAPLPPKQTEDQQSDAAGEKEDVD-FYKFINDAIGKPMINGLEDIFQNQDD 76
          T APLP KQ  +QQ +AAGE ++ D ++KFI D  GKP+++G +D+FQNQ D
Sbjct: 14 THAPLPLKQINNQQKNAAGESDNEDHYFKFIGDTFGKPVMDGFKDVFQNQVD 65

[Close]

BLAST of PI0028007 vs. ExPASy TrEMBL
Match: A0A5A7VKU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00210 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 45/122 (36.89%), Postives = 58/122 (47.54%), Query Frame = 0


Query: 25  TRAPLPPKQTEDQQSDAAGEKEDVDFY-KFINDAIGKPMINGLEDIFQNQDDHFAYEIAS 84
           T  P PPKQ   QQ D   E +D D Y KF                     +    +IA 
Sbjct: 101 TYPPSPPKQRSKQQ-DTTKESDDEDEYVKF---------------------EKIESDIAM 160

Query: 85  LKAPNKA-------MVSLIKKASLRSDRQYKSMMNYIHAAITSLVPKRAIPLEFEEALSD 139
           LK  N+A       M + IK+ASL ++ Q +++MNYIH  I SLVP    P E EE L++
Sbjct: 161 LKTQNEAMQTQIQTMKTFIKQASLWTEMQCRTLMNYIHVTIVSLVPTPIFPPELEEPLTE 200

[Close]

BLAST of PI0028007 vs. NCBI nr
Match: KAA0047757.1 (hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa] >TYK02391.1 hypothetical protein E5676_scaffold155G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-05
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 25 TRAPLPPKQTEDQQSDAAGEKEDVD-FYKFINDAIGKPMINGLEDIFQNQDD 76
          T APLP KQ  +QQ +AAGE ++ D ++KFI D  GKP+++G +D+FQNQ D
Sbjct: 14 THAPLPLKQINNQQKNAAGESDNEDHYFKFIGDTFGKPVMDGFKDVFQNQVD 65

[Close]

BLAST of PI0028007 vs. NCBI nr
Match: KAA0067817.1 (hypothetical protein E6C27_scaffold2484G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-04
Identity = 45/122 (36.89%), Postives = 58/122 (47.54%), Query Frame = 0


Query: 25  TRAPLPPKQTEDQQSDAAGEKEDVDFY-KFINDAIGKPMINGLEDIFQNQDDHFAYEIAS 84
           T  P PPKQ   QQ D   E +D D Y KF                     +    +IA 
Sbjct: 101 TYPPSPPKQRSKQQ-DTTKESDDEDEYVKF---------------------EKIESDIAM 160

Query: 85  LKAPNKA-------MVSLIKKASLRSDRQYKSMMNYIHAAITSLVPKRAIPLEFEEALSD 139
           LK  N+A       M + IK+ASL ++ Q +++MNYIH  I SLVP    P E EE L++
Sbjct: 161 LKTQNEAMQTQIQTMKTFIKQASLWTEMQCRTLMNYIHVTIVSLVPTPIFPPELEEPLTE 200

The following BLAST results are available for this feature:

BLAST of PI0028007 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028007 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0L9	9.3e-06	53.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VKU1	1.3e-04	36.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0028007 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047757.1	1.9e-05	53.85	hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa] >TYK023...	[more]
KAA0067817.1	2.8e-04	36.89	hypothetical protein E6C27_scaffold2484G00210 [Cucumis melo var. makuwa]	[more]

BLAST of PI0028007 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0028007.1	PI0028007.1	mRNA