PI0027979 (gene) Melon (PI 482460) v1

Overview


Name	PI0027979
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pentatricopeptide repeat-containing protein, chloroplastic
Location	chr04: 14168480 .. 14168893 (+)
RNA-Seq Expression	PI0027979
Synteny	PI0027979

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCAAAATGTAGAGCGATTCATATGACAAGAAAGCTTTTTGAGATGATCAATAACTGCATGTAATAACATGGAATGCAATGATAGATGGGCATGGAACACATGGACTTGAAAAAGCTCCTCCTGATCTCATTGATAAAATGAAAAAAAAAAGGAACAATAGAGCCAAATTATCTGTCATCTCTGCTTGCAGTCACTTAGGTTTGGTGGACGAAAGACTGCCATTTCAAGAGGACGAAAAAAGACTATGGATTGGAGGCTTCAAATGGATCACTACGGTGCTATGGCAGGATCAAAGAAGCCTGGGATTTTATTGAAAACATGCCTATTGGTCTAGGGATTACTGTATATGGTGCCACGTTGGGTGCTTGTAAAATTAAAAAAAAAATGTTGAATTGGGAGAGAGCCTAA

mRNA sequence

ATGTATGCAAAATGTAGAGCGATTCATATGACAAGAAAGCTTTTTGAGATGATCAATAACTGCATGACGAAAAAAGACTATGGATTGGAGGCTTCAAATGGATCACTACGGTGCTATGGCAGGATCAAAGAAGCCTGGGATTTTATTGAAAACATGCCTATTGGTCTAGGGATTACTGTATATGGTGCCACGTTGGGTGCTTGTAAAATTAAAAAAAAAATGTTGAATTGGGAGAGAGCCTAA

Coding sequence (CDS)

ATGTATGCAAAATGTAGAGCGATTCATATGACAAGAAAGCTTTTTGAGATGATCAATAACTGCATGACGAAAAAAGACTATGGATTGGAGGCTTCAAATGGATCACTACGGTGCTATGGCAGGATCAAAGAAGCCTGGGATTTTATTGAAAACATGCCTATTGGTCTAGGGATTACTGTATATGGTGCCACGTTGGGTGCTTGTAAAATTAAAAAAAAAATGTTGAATTGGGAGAGAGCCTAA

Protein sequence

MYAKCRAIHMTRKLFEMINNCMTKKDYGLEASNGSLRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA

Homology

[Close]

BLAST of PI0027979 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.6e-07
Identity = 28/66 (42.42%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 22  MTKKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM 81
           M K++Y +E S          L   GR+ EAWDFI  MP+   + VYGA LGAC+I K +
Sbjct: 564 MMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNV 623

[Close]

BLAST of PI0027979 vs. ExPASy Swiss-Prot
Match: Q9CAY1 (Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H52 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04
Identity = 24/58 (41.38%), Postives = 32/58 (55.17%), Query Frame = 0


Query: 24  KKDYGLEASNGSLRCY-------GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM 75
           K++Y LE       C        GR+ EA +FIE+MP+     V+GA LGACKI K +
Sbjct: 385 KREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNV 442

[Close]

BLAST of PI0027979 vs. ExPASy TrEMBL
Match: A0A0A0KNU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180880 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.9e-12
Identity = 44/81 (54.32%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 1  MYAKCRAIHMTRKLFEMINNCMTKKDYGLEASNGSLRCYG---RIKEAWDFIENMPIGLG 60
          MYAKC  IHMT    E             E       CYG   RIKE WDFIENMPIGLG
Sbjct: 1  MYAKCGVIHMTSHNIE------------CEGRWCGTPCYGRARRIKEVWDFIENMPIGLG 60

Query: 61 ITVYGATLGACKIKKKMLNWE 79
          ITVYGATLGAC I K + + E
Sbjct: 61 ITVYGATLGACNIHKNVESGE 69

[Close]

BLAST of PI0027979 vs. ExPASy TrEMBL
Match: A0A5D3CX30 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003120 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.6e-10
Identity = 39/64 (60.94%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 24  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLN 81
           K+DYGLE S          L   GRIKEAWDFIENMPI  GITVYGA LGACKI K +  
Sbjct: 578 KQDYGLEPSMDHYGTMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNVEF 637

[Close]

BLAST of PI0027979 vs. ExPASy TrEMBL
Match: A0A0A0KPP6 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G583260 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.6e-10
Identity = 39/64 (60.94%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 24  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLN 81
           K+DYGLE S          L   GRIKEAWDFIENMPI  GITVYGA LGACKI K +  
Sbjct: 578 KQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEV 637

[Close]

BLAST of PI0027979 vs. ExPASy TrEMBL
Match: A0A1S3BEJ2 (pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488809 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.6e-10
Identity = 39/64 (60.94%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 24  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLN 81
           K+DYGLE S          L   GRIKEAWDFIENMPI  GITVYGA LGACKI K +  
Sbjct: 578 KQDYGLEPSMDHYGTMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNVEF 637

[Close]

BLAST of PI0027979 vs. ExPASy TrEMBL
Match: A0A6J1CD18 (pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010091 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 24  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLN 81
           ++DYGLE S          L   GRI EAWDFIENMP+  GITVYGA LGACKI K +  
Sbjct: 584 EQDYGLEPSMDHYGAMVDLLGRAGRINEAWDFIENMPVSPGITVYGAMLGACKIHKNVEL 643

[Close]

BLAST of PI0027979 vs. NCBI nr
Match: KAG5249867.1 (pentatricopeptide repeat-containing protein [Salix suchowensis])

HSP 1 Score: 82.0 bits (201), Expect = 2.5e-12
Identity = 47/93 (50.54%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 1   MYAKCRAIHMTRKLFEMINN---CM---TKKDYGLE-------ASNGSLRCYGRIKEAWD 60
           MYAKC  IH  RKLF+M      C     KKDYG+E       A    L   GR+ +AWD
Sbjct: 431 MYAKCGTIHTARKLFDMFGRRRACFFDSMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWD 490

Query: 61  FIENMPIGLGITVYGATLGACKIKKKMLNWERA 81
           FI+ MPI  GITVYGA LGACKI K +   E+A
Sbjct: 491 FIQKMPIDPGITVYGAMLGACKIHKNVDLGEKA 523

[Close]

BLAST of PI0027979 vs. NCBI nr
Match: KGN50529.1 (hypothetical protein Csa_000167 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 44/81 (54.32%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 1  MYAKCRAIHMTRKLFEMINNCMTKKDYGLEASNGSLRCYG---RIKEAWDFIENMPIGLG 60
          MYAKC  IHMT    E             E       CYG   RIKE WDFIENMPIGLG
Sbjct: 1  MYAKCGVIHMTSHNIE------------CEGRWCGTPCYGRARRIKEVWDFIENMPIGLG 60

Query: 61 ITVYGATLGACKIKKKMLNWE 79
          ITVYGATLGAC I K + + E
Sbjct: 61 ITVYGATLGACNIHKNVESGE 69

[Close]

BLAST of PI0027979 vs. NCBI nr
Match: XP_008445930.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucumis melo] >KAA0034113.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK15808.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 39/64 (60.94%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 24  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLN 81
           K+DYGLE S          L   GRIKEAWDFIENMPI  GITVYGA LGACKI K +  
Sbjct: 578 KQDYGLEPSMDHYGTMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNVEF 637

[Close]

BLAST of PI0027979 vs. NCBI nr
Match: XP_004147126.2 (pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucumis sativus] >KGN51595.1 hypothetical protein Csa_009111 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 39/64 (60.94%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 24  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLN 81
           K+DYGLE S          L   GRIKEAWDFIENMPI  GITVYGA LGACKI K +  
Sbjct: 578 KQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEV 637

[Close]

BLAST of PI0027979 vs. NCBI nr
Match: XP_023541274.1 (pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 7.6e-09
Identity = 36/58 (62.07%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 24  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM 75
           K+DYGLE S          L   GRIKEAWDFIENMP+  GITVYGA LGACKI K +
Sbjct: 583 KQDYGLEPSMDHYGVMVDLLGRAGRIKEAWDFIENMPVSPGITVYGAMLGACKIHKNV 640

[Close]

BLAST of PI0027979 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 6.8e-08
Identity = 28/66 (42.42%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 22  MTKKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM 81
           M K++Y +E S          L   GR+ EAWDFI  MP+   + VYGA LGAC+I K +
Sbjct: 564 MMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNV 623

[Close]

BLAST of PI0027979 vs. TAIR 10
Match: AT3G11460.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 24/58 (41.38%), Postives = 32/58 (55.17%), Query Frame = 0


Query: 24  KKDYGLEASNGSLRCY-------GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM 75
           K++Y LE       C        GR+ EA +FIE+MP+     V+GA LGACKI K +
Sbjct: 385 KREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNV 442

[Close]

BLAST of PI0027979 vs. TAIR 10
Match: AT1G74600.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 23/53 (43.40%), Postives = 27/53 (50.94%), Query Frame = 0


Query: 25  KDYGLEASNGSLRCY-------GRIKEAWDFIENMPIGLGITVYGATLGACKI 71
           KDYG+E  N    C        GR++EA  FI NM I     V+G  L ACKI
Sbjct: 781 KDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKI 833

[Close]

BLAST of PI0027979 vs. TAIR 10
Match: AT4G01030.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.0e-04
Identity = 17/44 (38.64%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 40  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM----LNWER 80
           G + EAWDFI+ M +    T++GA L +CKI + +    + W+R
Sbjct: 547 GYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKR 590

The following BLAST results are available for this feature:

BLAST of PI0027979 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E6Q1	9.6e-07	42.42	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
Q9CAY1	2.0e-04	41.38	Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS...	[more]

BLAST of PI0027979 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNU8	7.9e-12	54.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180880 PE=4 SV=1	[more]
A0A5D3CX30	9.6e-10	60.94	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0KPP6	9.6e-10	60.94	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G5832...	[more]
A0A1S3BEJ2	9.6e-10	60.94	pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Cucumis ...	[more]
A0A6J1CD18	1.4e-08	56.25	pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X1 ...	[more]

BLAST of PI0027979 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5249867.1	2.5e-12	50.54	pentatricopeptide repeat-containing protein [Salix suchowensis]	[more]
KGN50529.1	1.6e-11	54.32	hypothetical protein Csa_000167 [Cucumis sativus]	[more]
XP_008445930.1	2.0e-09	60.94	PREDICTED: pentatricopeptide repeat-containing protein At1g11290, chloroplastic ...	[more]
XP_004147126.2	2.0e-09	60.94	pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucumis sa...	[more]
XP_023541274.1	7.6e-09	62.07	pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucurbita ...	[more]

BLAST of PI0027979 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11290.1	6.8e-08	42.42	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G11460.1	1.4e-05	41.38	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G74600.1	1.2e-04	43.40	pentatricopeptide (PPR) repeat-containing protein	[more]
AT4G01030.1	6.0e-04	38.64	pentatricopeptide (PPR) repeat-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47928:SF126	OS06G0112000 PROTEIN	coord: 40..73
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 40..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027979.1	PI0027979.1	mRNA