PI0027907 (gene) Melon (PI 482460) v1

Overview


Name	PI0027907
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	ribonuclease H2 subunit C
Location	chr12: 9544749 .. 9548116 (-)
RNA-Seq Expression	PI0027907
Synteny	PI0027907

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGCCAAAAGGATGAAATGGAAAAGAAAAAGACAAAAAACAAAAACCAATTTGGAGCGGGAAAATGTTGGTCGACGATCCATTCTCATTTCTCAGTGTTCAAAAGAACGGGAAACGTAGAATCTGAAATACAATACAATGGTCAATTGAATTTCCTTCCCAGAAATCCGAAGCATCAACCTGGGTTTATTTAGGGTTTCAACTTTTAGGTTTGCTTTACAATCAATCAAATGAATGCTCAAAACGAGGGGAAACGGGAAGTGATCGTCCATTTTGATTTTGGGACTGACCCTAAAGCTTTAGATCTCAGTGGTAAACTCCATCAGCTTCCCTGTACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCACTATTTTAAACCCAAATCCACTGGTAATGCCCTAATTTTCGCTGTTTCTTTTACTCAACTTTATATATTTAGCGTAATTTTTTTGTACTTTACTCAGTAGTTTCTTGCCTATTATAGGAATTGAGGTTGATGGTTTGAATGTTGAGGAAGCTTATTTTAGAGGAAGAAAGTTGCAAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCTGGTAATATGAAATTACTTTCAGCTTTCACTTCATTGAAAATTCGATCTTCTTTGTTGATATTACCCACTTGTATTTTGTATTGTTCATTACTTCAATCTCTTTATCACCTATCTATTGCTTACGTAAATTATTGGTTTCAGTTATGTATATTATTTGGCATGATATTACTTTATAATATTAAAAAGAGTTTTCTACTTTAATTTCTTATAAAATGGAAACAATGAGAAACAAAAGAAGATGTTATTGTTAACTGAGTAAAATTAGTTCAGCTTCTGTCTTTTAGAGATATATTTTGGGTTAGCTATGAACATTTCTATCATTGGAAAGTTGTTATTACTGTGAGCACTGGTTTTTCTAGTTTTGTTGGATGTTTTAGTTGGGAATTGGGATTGAATATTTTTATCTTAAAATGGAATGTTTCTGCTCTCTATGTAGAACAATGATTACATATTCACAGGGTCACAGGATTTTGTCTTTTCTTAAACAAGGCATTTCCATCAAACCAATAGAGTAGAGGTCAATAAAAGCTTGCTGACAGTTTAGTTTTTAAAATGAAATTTATTCCAATTCCAGGCATATCCAAAATTGACTTCCTTAAAATTGTGTATGTTTTCATTTATCTGTTTTAATTCATATGTTGCTGTCTAAAAGAAAAGTAGTTTCAAAACCCACTTCAATTGGCTAAGGCGATTATTATAAGTATTCAAATAAGCAGAGATTGAATACTATGATACTGGTTGTTCTTGTTCTCTGTCTTAGCTGCAACTGTTTCTCACGTGGGTTGAATGGGATTCACTGAGACAATTGGTGAAGAGCTTTCCTACAATTCTTAGCTTATGTTATGATTGATGTTCTTATTTCACTTGTAATATGCCTGGATATATTTTGAAGGAATTTCCACATGCATTCTGTATATGCTTTGTGAAGAAAAAACGCTAGGGTGGTAGAATGGTTGAAGATAAACAGGGTATTTCAACTGGAACAAGTTTATGAATAAGGAATCTTTATTTGTTTCTTGTTCTTTATTACTAATATCATTATTTTTTTAAAATTTGTTTTACTGCTCCATGTCTAATTTCTGCTTATGGGATTGTCAACAGCGTAGGGCTTAGTCATTTCATGAGTACATGCACAATAGCTCCTTCCGGCTTTTTTTCCTTGTTTTTTTTTTTTTTTGATAATGGTTACTTGCAGAAACTTAGTTGGTAATCTCTTTAACTAAAGATTGACACATACATGCCTCATGGGCAAGTTCCCTGTTCCCATTCTTGGTTTATATTTATGAAAATTTTGAAGAATACATGCAAATAAATAACTTGAACCTTCTCGTTTAGTGTAAATAAGATATGTTTATTTTCTTGTTGGGAGATTTTCTATGAAAAAAACCATCGGTTATTTGATGATTCTAGAAAAAGGAAATGAGAAGGAATGAGCCATCCATTTTCATGTTTCTTCTAGTTATTACGCTGCTATAGAACAACAGTTTTCTAATTATCCCTTTTTGTTTTGTAATTCTAGCCAATTGGAAAGTATTTACATATTAAGAGCCTTGTTTGAATGGACACGAGGATATCAGATCTCCAATCCTTCTTAGAGTAAATGTAAATGCTTTCTGTTAAAGAAAAATGCTCTGTTTCCACCCTTTCTATCTAATTTGAAATTTTGCACCAAGGCATCCAGAACAAATATTGATATAAATTTCTTCCACAGTTCATTTAACCAATTTGAGCTAAAGGATCTATGTTTTTCTGTAAATGTTCTTCAGGCTATGTGCTAGGGAAAAAGAGTCTTGGAAAGAATAAAGCTTCTGAACAGTGTGATGACTCAAGCCCCTGGCAGGTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTACCGTCACAAGATGATACGTTCCAACGTACTTTTCATTGGCTGACCGTTGCACAAGCAGTATGATTCTGATCAATTCACATCAAAATGATTAACAATTTCATGTCTTGTTTGCATTTTTCTATATCCAAGTACTAAAACAGCTATGAGGTTTGAAAATAGTTTCAAACAAGCTTTAAACTAACTACTAAGAGATGAAAAATGTGGACGTTTCTTTTAATCAAATATATTAGGTTTTTTATGTAACTCCAAAGTCTGTGCATCTTCCTCTCCAATATTGGCCAAATATTAAAGAAGATTTATATTGTTCATAACATTTCTTTTGACTGCTCTTTGAATTATTTCCATTATAGTGTAACTTCTTTGGGTTTTCAATATGCAATAATAGACTCGTACTAGTAATATAGTTTATCAATGATAGACTTAGAGAACTGAATTTAAATTTTGTCATATTTGTCAATTCTTTTGGACTGTGTTATATTTGCAAATATTTTGGGTTTGATTGCTATTTTTGCAACTGTCTCATAAATTTATTTCCTCAAGTTTCTTACCTCATGGAATTTTGTTTATGGTTGCAGTTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACTTGAGTTGATTAGGTTTAGGATCATGTGTTGTGAGAAGAAAACTTCAAGAGACTTAGAATGGTTCCATTCTACTTCGATTTGTATTTGGTCACATTATCATCTATCTTACCAATTTATTTAATGGGTTTGGCATTTTAAACCATGATGTCACCGAAAGAGTTTTCTTTTTTTCAATTTCATACAATTGTAGTAATACTATATACATGATTTACATTGTAAGTCTTTCCCGTCCCTATGACCTATCAAATTTTGAAACTTTTTCTTTA

mRNA sequence

CAAAAGCCAAAAGGATGAAATGGAAAAGAAAAAGACAAAAAACAAAAACCAATTTGGAGCGGGAAAATGTTGGTCGACGATCCATTCTCATTTCTCAGTGTTCAAAAGAACGGGAAACGTAGAATCTGAAATACAATACAATGGTCAATTGAATTTCCTTCCCAGAAATCCGAAGCATCAACCTGGGTTTATTTAGGGTTTCAACTTTTAGGTTTGCTTTACAATCAATCAAATGAATGCTCAAAACGAGGGGAAACGGGAAGTGATCGTCCATTTTGATTTTGGGACTGACCCTAAAGCTTTAGATCTCAGTGGTAAACTCCATCAGCTTCCCTGTACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCACTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATGTTGAGGAAGCTTATTTTAGAGGAAGAAAGTTGCAAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCTGGCTATGTGCTAGGGAAAAAGAGTCTTGGAAAGAATAAAGCTTCTGAACAGTGTGATGACTCAAGCCCCTGGCAGGTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTACCGTCACAAGATGATACGTTCCAACGTACTTTTCATTGGCTGACCGTTGCACAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACTTGAGTTGATTAGGTTTAGGATCATGTGTTGTGAGAAGAAAACTTCAAGAGACTTAGAATGGTTCCATTCTACTTCGATTTGTATTTGGTCACATTATCATCTATCTTACCAATTTATTTAATGGGTTTGGCATTTTAAACCATGATGTCACCGAAAGAGTTTTCTTTTTTTCAATTTCATACAATTGTAGTAATACTATATACATGATTTACATTGTAAGTCTTTCCCGTCCCTATGACCTATCAAATTTTGAAACTTTTTCTTTA

Coding sequence (CDS)

ATGAATGCTCAAAACGAGGGGAAACGGGAAGTGATCGTCCATTTTGATTTTGGGACTGACCCTAAAGCTTTAGATCTCAGTGGTAAACTCCATCAGCTTCCCTGTACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCACTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATGTTGAGGAAGCTTATTTTAGAGGAAGAAAGTTGCAAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCTGGCTATGTGCTAGGGAAAAAGAGTCTTGGAAAGAATAAAGCTTCTGAACAGTGTGATGACTCAAGCCCCTGGCAGGTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTACCGTCACAAGATGATACGTTCCAACGTACTTTTCATTGGCTGACCGTTGCACAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACTTGAGTTGA

Protein sequence

MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

Homology

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BLAST of PI0027907 vs. ExPASy Swiss-Prot
Match: Q8TDP1 (Ribonuclease H2 subunit C OS=Homo sapiens OX=9606 GN=RNASEH2C PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.6e-10
Identity = 42/137 (30.66%), Postives = 59/137 (43.07%), Query Frame = 0


Query: 30  LHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVL 89
           LH LPC +  DGP PV  +F P        G    E  FRGR L+G  +++P G  GYV+
Sbjct: 29  LHLLPCEVAVDGPAPVGRFFTPAIR----QGPEGLEVSFRGRCLRGEEVAVPPGLVGYVM 88

Query: 90  ----GKKSLGK----NKASEQCDDSSPWQ--------VKAKFDNITYWNHDTLPSQDDTF 149
                K S+GK      +     +  P +          A F   T W  +T+P  D   
Sbjct: 89  VTEEKKVSMGKPDPLRDSGTDDQEEEPLERDFDRFIGATANFSRFTLWGLETIPGPDAKV 148

Query: 150 QRTFHWLTVAQALHKPV 151
           +    W ++A A+H  V
Sbjct: 149 RGALTWPSLAAAIHAQV 161

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BLAST of PI0027907 vs. ExPASy Swiss-Prot
Match: Q10448 (Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC12B10.15c PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.6e-10
Identity = 40/118 (33.90%), Postives = 58/118 (49.15%), Query Frame = 0


Query: 29  KLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSG-Y 88
           K   LPC I +DGP PV  YF  K   I  +  +      RGR+L G  + LPE Y+G  
Sbjct: 20  KASLLPCHISYDGPAPVFEYFHDK-IQISNNTHSKTTVCLRGRELNGEELDLPENYTGQV 79

Query: 89  VLGKKSLGKNKASEQCDDSSPWQVKAKFDNITYWNHDTL-PSQDDTFQR-TFHWLTVA 144
           VL    L  ++ SE+    S W + + F+ +  WN D +  S+ D ++R    W+  A
Sbjct: 80  VLCDDGLENDETSEKEIPESTWCINSTFEKVMLWNRDNMRSSEKDQWKRGVLEWIQFA 136

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BLAST of PI0027907 vs. ExPASy TrEMBL
Match: A0A5A7TIT8 (Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00020 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.4e-84
Identity = 153/168 (91.07%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MNAQN  K E  V   FDFG+DPKALDLSGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKASEQCDDSSPWQVKAKFDNI 120
           DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK+K+S+QCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 167
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

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BLAST of PI0027907 vs. ExPASy TrEMBL
Match: A0A1S3C9A8 (uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.4e-84
Identity = 153/168 (91.07%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MNAQN  K E  V   FDFG+DPKALDLSGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKASEQCDDSSPWQVKAKFDNI 120
           DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK+K+S+QCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 167
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

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BLAST of PI0027907 vs. ExPASy TrEMBL
Match: A0A0A0M1A2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G708160 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.1e-83
Identity = 155/168 (92.26%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MN QNE K EVIV   FDFGTDPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKASEQCDDSSPWQVKAKFDNI 120
           DGLN+EEAYFRGRKLQGATISLPEGYSGYVLGKKS    KASEQCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----KASEQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 167
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 164

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BLAST of PI0027907 vs. ExPASy TrEMBL
Match: A0A6J1EN41 (uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.0e-74
Identity = 135/166 (81.33%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 1   MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDG 60
           M+++ E KREVIV FDFG+D  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKASEQCDDSSPWQVKAKFDNITY 120
           L+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK KASE+  DSS WQVKAKF+NITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 167
           WNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of PI0027907 vs. ExPASy TrEMBL
Match: A0A6J1KH29 (uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.0e-74
Identity = 134/166 (80.72%), Postives = 150/166 (90.36%), Query Frame = 0


Query: 1   MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDG 60
           M+++ E KREVIV FDFG+D  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKASEQCDDSSPWQVKAKFDNITY 120
           L+V+ AYFRGRKLQGATISLPEGY GYV+G+KSL K KASE+  DSS WQVKAKF+NITY
Sbjct: 61  LSVQNAYFRGRKLQGATISLPEGYYGYVIGRKSLRKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 167
           WNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA ASTALKN+S
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLADASTALKNMS 166

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BLAST of PI0027907 vs. NCBI nr
Match: XP_008459055.1 (PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo] >KAA0043234.1 ribonuclease H2 subunit C isoform X2 [Cucumis melo var. makuwa] >TYK29298.1 ribonuclease H2 subunit C isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 319.3 bits (817), Expect = 1.9e-83
Identity = 153/168 (91.07%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MNAQN  K E  V   FDFG+DPKALDLSGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKASEQCDDSSPWQVKAKFDNI 120
           DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK+K+S+QCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 167
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

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BLAST of PI0027907 vs. NCBI nr
Match: XP_011660323.1 (uncharacterized protein C12B10.15c [Cucumis sativus] >KGN66902.1 hypothetical protein Csa_007140 [Cucumis sativus])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 155/168 (92.26%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MN QNE K EVIV   FDFGTDPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKASEQCDDSSPWQVKAKFDNI 120
           DGLN+EEAYFRGRKLQGATISLPEGYSGYVLGKKS    KASEQCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----KASEQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 167
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 164

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BLAST of PI0027907 vs. NCBI nr
Match: XP_038893586.1 (uncharacterized protein C12B10.15c [Benincasa hispida])

HSP 1 Score: 299.7 bits (766), Expect = 1.6e-77
Identity = 145/166 (87.35%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDG 60
           MNA+NE K EVIV FDF +D  ALDLSGK+HQLPC IKFDGPC VS YFKPKSTGIE DG
Sbjct: 1   MNAENERKGEVIVDFDFESDSVALDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEFDG 60

Query: 61  LNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKASEQCDDSSPWQVKAKFDNITY 120
           L+VEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK KASEQ  +SSPWQVKAKF NITY
Sbjct: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKRKASEQDQNSSPWQVKAKFANITY 120

Query: 121 WNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 167
           WNHDTLPSQDDTFQR+FHWLTVAQALHKPVTAEDLASASTALKN+S
Sbjct: 121 WNHDTLPSQDDTFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS 166

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BLAST of PI0027907 vs. NCBI nr
Match: KAG6583796.1 (Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 136/166 (81.93%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDG 60
           M+++NE KREVIV FDFG+D  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDG
Sbjct: 1   MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKASEQCDDSSPWQVKAKFDNITY 120
           L+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK KASE+  DSS WQVKAKF+NITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 167
           WNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

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BLAST of PI0027907 vs. NCBI nr
Match: XP_022927160.1 (uncharacterized protein C12B10.15c [Cucurbita moschata])

HSP 1 Score: 289.3 bits (739), Expect = 2.2e-74
Identity = 135/166 (81.33%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 1   MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDG 60
           M+++ E KREVIV FDFG+D  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKASEQCDDSSPWQVKAKFDNITY 120
           L+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK KASE+  DSS WQVKAKF+NITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 167
           WNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

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BLAST of PI0027907 vs. TAIR 10
Match: AT2G39440.1 (CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-51
Identity = 92/145 (63.45%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 24  LDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEG 83
           +DLS ++HQLPC I+FDGP  VSHYFKPKS+ +E+DG+  EEA+FRGRKLQGATISLP G
Sbjct: 16  VDLSSQVHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKTEEAHFRGRKLQGATISLPSG 75

Query: 84  YSGYVLGKKS----LGKNKASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHW 143
           YSG+VL + S     GK KAS   +D+  W+VKAKF+N+TYWNHD+LPS+DDTF R+FHW
Sbjct: 76  YSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLPSKDDTFFRSFHW 135

Query: 144 LTVAQALHKPVTAEDLASASTALKN 165
            ++A+ALHKPV  EDL + S   KN
Sbjct: 136 FSIAEALHKPVKVEDLVAVSHGGKN 160

The following BLAST results are available for this feature:

BLAST of PI0027907 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8TDP1	6.6e-10	30.66	Ribonuclease H2 subunit C OS=Homo sapiens OX=9606 GN=RNASEH2C PE=1 SV=1	[more]
Q10448	6.6e-10	33.90	Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / AT...	[more]

BLAST of PI0027907 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIT8	9.4e-84	91.07	Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3C9A8	9.4e-84	91.07	uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 ...	[more]
A0A0A0M1A2	6.1e-83	92.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G708160 PE=4 SV=1	[more]
A0A6J1EN41	1.0e-74	81.33	uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094...	[more]
A0A6J1KH29	4.0e-74	80.72	uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 P...	[more]

BLAST of PI0027907 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459055.1	1.9e-83	91.07	PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo] >KAA0043234.1 ribon...	[more]
XP_011660323.1	1.3e-82	92.26	uncharacterized protein C12B10.15c [Cucumis sativus] >KGN66902.1 hypothetical pr...	[more]
XP_038893586.1	1.6e-77	87.35	uncharacterized protein C12B10.15c [Benincasa hispida]	[more]
KAG6583796.1	4.3e-75	81.93	Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022927160.1	2.2e-74	81.33	uncharacterized protein C12B10.15c [Cucurbita moschata]	[more]

BLAST of PI0027907 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39440.1	1.2e-51	63.45	CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013924	Ribonuclease H2, subunit C	PFAM	PF08615	RNase_H2_suC	coord: 30..146 e-value: 2.5E-24 score: 86.1
IPR013924	Ribonuclease H2, subunit C	CDD	cd09271	RNase_H2-C	coord: 31..124 e-value: 4.29595E-40 score: 129.028
None	No IPR available	GENE3D	2.40.128.680		coord: 4..153 e-value: 5.6E-41 score: 141.1
None	No IPR available	PANTHER	PTHR47204	OS02G0168900 PROTEIN	coord: 16..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027907.1	PI0027907.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0032299	ribonuclease H2 complex