PI0027649 (gene) Melon (PI 482460) v1

Overview
NamePI0027649
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr11: 17642509 .. 17642715 (+)
RNA-Seq ExpressionPI0027649
SyntenyPI0027649
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAACAACAACAACAACCAAAATGTTCCTCCCAATCAAGCTGCCCAAGAACAGAACCTCGCCTATATGGCCCACGATTTAAACAGACCGATTAGGTCGTATGCTTTGCCAAATTTCTACAACTTTAGCCCAGACATTGCCTACCCTGTGTTCGGCAAGAATGCACAATTTGAGATTAAACTTGTTATGATACAAATGATATAG

mRNA sequence

ATGGCCAACAACAACAACAACCAAAATGTTCCTCCCAATCAAGCTGCCCAAGAACAGAACCTCGCCTATATGGCCCACGATTTAAACAGACCGATTAGGTCGTATGCTTTGCCAAATTTCTACAACTTTAGCCCAGACATTGCCTACCCTGTGTTCGGCAAGAATGCACAATTTGAGATTAAACTTGTTATGATACAAATGATATAG

Coding sequence (CDS)

ATGGCCAACAACAACAACAACCAAAATGTTCCTCCCAATCAAGCTGCCCAAGAACAGAACCTCGCCTATATGGCCCACGATTTAAACAGACCGATTAGGTCGTATGCTTTGCCAAATTTCTACAACTTTAGCCCAGACATTGCCTACCCTGTGTTCGGCAAGAATGCACAATTTGAGATTAAACTTGTTATGATACAAATGATATAG

Protein sequence

MANNNNNQNVPPNQAAQEQNLAYMAHDLNRPIRSYALPNFYNFSPDIAYPVFGKNAQFEIKLVMIQMI
Homology
BLAST of PI0027649 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-14
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 0

Query: 3  NNNNNQNVPPNQAAQEQNLAYMAHDLNRPIRSYALPNFYNFSPDIAYPVFGKNAQFEIKL 62
          NN NNQ +P NQAAQ  N  Y+A D +RPIRSYA PN Y+F+P IAYP F +N +FEIKL
Sbjct: 2  NNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKL 61

Query: 63 VMIQMI 69
          VM+Q+I
Sbjct: 62 VMLQII 67

BLAST of PI0027649 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 6  NNQNVPPNQAAQEQNLAYMAHDLNRPIRSYALPNFYNFSPDIAYPVFGKNAQFEIKLVMI 65
          NNQN P  Q  QEQN AY+AHDL++PI+SYA PN Y+F+P IAY  FG+N  FEIK +M+
Sbjct: 2  NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 66 QM 68
           M
Sbjct: 62 YM 63

BLAST of PI0027649 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 2   ANNNNNQNVPPNQAAQEQNLAYMAHDLNRPIRSYALPNFYNFSPDIAYPVFGKNAQFEIK 61
           +N+ NNQ  P NQA Q  NL Y+AH+ +RPIRS   PN Y F+P I YP FG+N +F+IK
Sbjct: 35  SNSQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIK 94

Query: 62  LVMIQMI 69
            VM+ ++
Sbjct: 95  PVMLSLL 101

BLAST of PI0027649 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 2   ANNNNNQNVPPNQAAQEQNLAYMAHDLNRPIRSYALPNFYNFSPDIAYPVFGKNAQFEIK 61
           +N+ NNQ  P NQA Q  NL Y+AH+ +RPIRS   PN Y F+P I YP FG+N +F+IK
Sbjct: 35  SNSQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIK 94

Query: 62  LVMIQMI 69
            VM+ ++
Sbjct: 95  PVMLSLL 101

BLAST of PI0027649 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 1  MANNNNNQNVPPNQAAQEQ-NLAYMAHDLNRPIRSYALPNFYNFSPDIAYPVFGKNAQFE 60
          MA+N NN  VP N A Q Q NL  +AH+L+ PIR+Y   N Y+F+  IAY VFG+NA FE
Sbjct: 1  MASNKNNV-VPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFE 60

Query: 61 IKLVMIQMI 69
          +K VM+QMI
Sbjct: 61 VKPVMLQMI 68

BLAST of PI0027649 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-14
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 0

Query: 3  NNNNNQNVPPNQAAQEQNLAYMAHDLNRPIRSYALPNFYNFSPDIAYPVFGKNAQFEIKL 62
          NN NNQ +P NQAAQ  N  Y+A D +RPIRSYA PN Y+F+P IAYP F +N +FEIKL
Sbjct: 2  NNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKL 61

Query: 63 VMIQMI 69
          VM+Q+I
Sbjct: 62 VMLQII 67

BLAST of PI0027649 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 6  NNQNVPPNQAAQEQNLAYMAHDLNRPIRSYALPNFYNFSPDIAYPVFGKNAQFEIKLVMI 65
          NNQN P  Q  QEQN AY+AHDL++PI+SYA PN Y+F+P IAY  FG+N  FEIK +M+
Sbjct: 2  NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 66 QM 68
           M
Sbjct: 62 YM 63

BLAST of PI0027649 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-10
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 2   ANNNNNQNVPPNQAAQEQNLAYMAHDLNRPIRSYALPNFYNFSPDIAYPVFGKNAQFEIK 61
           +N+ NNQ  P NQA Q  NL Y+AH+ +RPIRS   PN Y F+P I YP FG+N +F+IK
Sbjct: 35  SNSQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIK 94

Query: 62  LVMIQMI 69
            VM+ ++
Sbjct: 95  PVMLSLL 101

BLAST of PI0027649 vs. NCBI nr
Match: KAA0060833.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-10
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 2   ANNNNNQNVPPNQAAQEQNLAYMAHDLNRPIRSYALPNFYNFSPDIAYPVFGKNAQFEIK 61
           +N+ NNQ  P NQA Q  NL Y+AH+ +RPIRS   PN Y F+P I YP FG+N +F+IK
Sbjct: 35  SNSQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIK 94

Query: 62  LVMIQMI 69
            VM+ ++
Sbjct: 95  PVMLSLL 101

BLAST of PI0027649 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-07
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 1   MANNNNNQNVPPNQAAQE--QNLAYMAHDLNRPIRSYALPNFYNFSPDIAYPVFGKNAQF 60
           MA+NNNN+    NQ      Q+  ++A D N PIR+YA PN Y+FSP I+ P+  +NA+F
Sbjct: 35  MADNNNNEAPEGNQGVNRPVQDPVFLAADHNIPIRNYAAPNLYDFSPGISRPIVEENARF 94

Query: 61  EIKLVMIQMI 69
           EIK VM+QMI
Sbjct: 95  EIKPVMVQMI 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U73.2e-1463.64Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN81.1e-1161.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CAB52.2e-1052.24Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7UXZ22.2e-1052.24Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5D3BVN11.0e-0756.52Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
Match NameE-valueIdentityDescription
KAA0062403.16.6e-1463.64putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
KAA0051815.12.4e-1161.29hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
TYK08803.14.5e-1052.24Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0060833.14.5e-1052.24Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
XP_038887458.12.1e-0751.43uncharacterized protein LOC120077591 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0027649.1PI0027649.1mRNA