PI0027539 (gene) Melon (PI 482460) v1

Overview


Name	PI0027539
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pol protein
Location	chr11: 14521094 .. 14521333 (-)
RNA-Seq Expression	PI0027539
Synteny	PI0027539

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAGGAAATACGTGGCTGACCCATCTCATGTTTTGGATTACGAGCCTTTGGCCATTGACGAGGATTTGAGTTATGTTGAGCATCCAGTTGAGATCTTGGCCAGAGAGGTTAAGACGCTTCGTAACAAAGAGATTCCGTTGGTGAAGATCCTTTGGCGCAACCACCGAGTAGAAGAAGCCACTTGGGAGCGAGAGGATGACATGAGAGCTAGTCATCCAGAGTTATTCGAAGATTAG

mRNA sequence

ATGCTAAGGAAATACGTGGCTGACCCATCTCATGTTTTGGATTACGAGCCTTTGGCCATTGACGAGGATTTGAGTTATGTTGAGCATCCAGTTGAGATCTTGGCCAGAGAGGTTAAGACGCTTCGTAACAAAGAGATTCCGTTGGTGAAGATCCTTTGGCGCAACCACCGAGTAGAAGAAGCCACTTGGGAGCGAGAGGATGACATGAGAGCTAGTCATCCAGAGTTATTCGAAGATTAG

Coding sequence (CDS)

ATGCTAAGGAAATACGTGGCTGACCCATCTCATGTTTTGGATTACGAGCCTTTGGCCATTGACGAGGATTTGAGTTATGTTGAGCATCCAGTTGAGATCTTGGCCAGAGAGGTTAAGACGCTTCGTAACAAAGAGATTCCGTTGGTGAAGATCCTTTGGCGCAACCACCGAGTAGAAGAAGCCACTTGGGAGCGAGAGGATGACATGAGAGCTAGTCATCCAGAGTTATTCGAAGATTAG

Protein sequence

MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED

Homology

[Close]

BLAST of PI0027539 vs. ExPASy TrEMBL
Match: A0A5A7UAA8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00800 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-32
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1    MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEE 60
            MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEE
Sbjct: 1413 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1472

Query: 61   ATWEREDDMRASHPELFED 80
            ATWEREDDMR+ +PELFE+
Sbjct: 1473 ATWEREDDMRSRYPELFEE 1491

[Close]

BLAST of PI0027539 vs. ExPASy TrEMBL
Match: A0A5A7VRK1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9806G00010 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-32
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEE 60
           MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110

Query: 61  ATWEREDDMRASHPELFED 80
           ATWEREDDMR+ +PELFE+
Sbjct: 111 ATWEREDDMRSRYPELFEE 129

[Close]

BLAST of PI0027539 vs. ExPASy TrEMBL
Match: A0A5A7TQM9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32484G00010 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-32
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEE 60
           MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110

Query: 61  ATWEREDDMRASHPELFED 80
           ATWEREDDMR+ +PELFE+
Sbjct: 111 ATWEREDDMRSRYPELFEE 129

[Close]

BLAST of PI0027539 vs. ExPASy TrEMBL
Match: A0A5A7V8Y0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9033G00010 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-32
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEE 60
           MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEE
Sbjct: 84  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 143

Query: 61  ATWEREDDMRASHPELFED 80
           ATWEREDDMR+ +PELFE+
Sbjct: 144 ATWEREDDMRSRYPELFEE 162

[Close]

BLAST of PI0027539 vs. ExPASy TrEMBL
Match: A0A5A7VA30 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27974G00010 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-32
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEE 60
          MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEE
Sbjct: 1  MLRKYVPDPSHVVDYEPLGIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60

Query: 61 ATWEREDDMRASHPELFE 79
          ATWEREDDMR+ +PELFE
Sbjct: 61 ATWEREDDMRSRYPELFE 78

[Close]

BLAST of PI0027539 vs. NCBI nr
Match: KAA0053953.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEE 60
           MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110

Query: 61  ATWEREDDMRASHPELFED 80
           ATWEREDDMR+ +PELFE+
Sbjct: 111 ATWEREDDMRSRYPELFEE 129

[Close]

BLAST of PI0027539 vs. NCBI nr
Match: KAA0062529.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEE 60
          MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEE
Sbjct: 1  MLRKYVPDPSHVVDYEPLGIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60

Query: 61 ATWEREDDMRASHPELFE 79
          ATWEREDDMR+ +PELFE
Sbjct: 61 ATWEREDDMRSRYPELFE 78

[Close]

BLAST of PI0027539 vs. NCBI nr
Match: KAA0046636.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEE 60
           MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEE
Sbjct: 84  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 143

Query: 61  ATWEREDDMRASHPELFED 80
           ATWEREDDMR+ +PELFE+
Sbjct: 144 ATWEREDDMRSRYPELFEE 162

[Close]

BLAST of PI0027539 vs. NCBI nr
Match: KAA0056504.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEE 60
           MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEE
Sbjct: 269 MLRKYVPDPSHVVDYEPLKIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 328

Query: 61  ATWEREDDMRASHPELFED 80
           ATWEREDDMR+ +PELFE+
Sbjct: 329 ATWEREDDMRSRYPELFEE 347

[Close]

BLAST of PI0027539 vs. NCBI nr
Match: KAA0067779.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEE 60
           MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110

Query: 61  ATWEREDDMRASHPELFED 80
           ATWEREDDMR+ +PELFE+
Sbjct: 111 ATWEREDDMRSRYPELFEE 129

The following BLAST results are available for this feature:

BLAST of PI0027539 vs.


Match Name	E-value	Identity	Description

BLAST of PI0027539 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAA8	6.8e-32	86.08	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7VRK1	6.8e-32	86.08	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9806G00010 P...	[more]
A0A5A7TQM9	6.8e-32	86.08	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32484G00010 ...	[more]
A0A5A7V8Y0	6.8e-32	86.08	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9033G00010 P...	[more]
A0A5A7VA30	6.8e-32	87.18	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27974G00010 ...	[more]

BLAST of PI0027539 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053953.1	1.4e-31	86.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0062529.1	1.4e-31	87.18	pol protein [Cucumis melo var. makuwa]	[more]
KAA0046636.1	1.4e-31	86.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0056504.1	1.4e-31	86.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0067779.1	1.4e-31	86.08	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0027539 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..77
None	No IPR available	PANTHER	PTHR46148:SF33	OS05G0296332 PROTEIN	coord: 1..77
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 8..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027539.1	PI0027539.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding