PI0027399 (gene) Melon (PI 482460) v1

Overview
NamePI0027399
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Locationchr11: 25353340 .. 25355862 (-)
RNA-Seq ExpressionPI0027399
SyntenyPI0027399
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTACGACCATTGAAGAAGCAAATGACATTGATACATTGAAGTTGGATGAGTTGTTTGCGTCATTACAAACGTCTGAGCTCACTTTTGATGATCAGGGTGACAAGAAAGGTAGGGTGTGGCATTTGATACGCATAATTGATACGCGATGTTGATTGTTATTGTTGATTTTATTCCTACTTCTGCATTGCTGATTCTAATGATATGTCGTTTAACGTACAATTTTTCCTCTTGCTCGCCCAAGTATAAGCGGAGCAAGAGGTTTCCTGGATCAGGGTCGCCCAAGAAAGGTCAGGGTCGAACACAGGTAATTTCTATCAAATGAGCTGTGAAATGCGTGCTTCTATACCAAGCGGTATAGATTAACGTATAAAGCGATGTAAACTTATGGAAGCCTAAGCTACTTATTTACATAGAGACATTTGCAGGAGAATGGGTTATGGATACGAAGGCATGCAATCTAACTTGTATGAGAATGGGAAGGAACATGCTACATTTTGGGCGATCTACATGTATGCTCTATGTTCAATGCGATATGATTAAGTAGAGAATCTTATAATTAAGGCGAGCACTTCTCGGTACCAAACGCCACACTTGCTCGCCTCTCGGGACGCAAATGATTAAGATAGTTCTACCTTCTTATCTAGGCGTTCCTAATTATAAACATCATAGTTAACTCTCTAATTAAGGCGACAACCTTTCGGCGCCTAGTGCCACACTTACTTCCTCTCGGAATGCAAATGAATGGAGTTAAAACGCCAGAATGAAGTTTTTTTCCAAACTTCATTCCACACATGCTTAGTTATGTCCTTGCTACTTACTCTCTCGAGTAGTTGGCGACTAGCGCTGGCCAAGCGAATTAGCTTGCCTAAGCATGATGACAGTTATAATAGAATTCCTTATTAAACACGCAATATACAATTCAACTACTTTAAATGTAAACATGCAATTGAAAAGTAGAGAAATGGTAGAATGTAGAGGGATGAAATATATTGTATTAATACTGTAGGCCTTGCGGCCACGAAATACATATTTTTGTACAACACAAGTAAATACATAAAATGGATGAAAAAGGGGATGTGTCGAGTTGCGGAATGCATTTACTTGCATTCCTTAGCTCTTTTACAAGTTAGGTGGAAAGTGTTTGGGAAAGTCTCTCTCTCTCTCTAATCTTCTCTCTTGAGCTCTTGCCGGATTGTTGATTGGAGAAAGGGTGGAGGATTGATACTGCAAATGGGGAGAACTCTAATAGGCGTTCTACCCTAGCCATCCTTAAGGGATGACCTCCTCTCGATGATTAAGCACTTGGAGTTGGGAGTATTTATATGTATGCTTTTGGCGGGAAGCATTTAATGCTCTTCTGTACAGTGTCCTTCTCGCGACGAAAGCATTTCATGTTAAGTCACACCATCTCCAACTACGATTCTTGTCTTTTAGCGAGTCATCATCGCATAGTGTTGTACTGGCAGTTCACCTTTGATTTTAGTTCGCCAGATGCTCTTCTTAACGCCTAAATGCAATGTGGCTCGCCTACTTTTCCTCTCTTCTCCTTCCTGCATGCAAAAACACTTGAAAGCACAATTTCTCATAATGACTTATGCAAAGCTCATTCTTAAATCATTACATGTTCGCACTGCAAACTACGCGTTAAGACCATTTATTCCGTGTTTTACCCTCATTGCTTTGCCTAAAAGGCTATAATAACTTGTATTTATACGAGTTATCAGCATTGCATTCTGTTGGTGATGAAGATTTTCAGCAGAACAAAGAGTGTCACCATGATGATAATTTAGCTGATTCCATACCCTTTTAACTAAACAGTTCTCAAAGGTTGTTCGTCAGTTTAATAAAAGGTTAGGGAATTATGGATGTCAGTACAACAGAGAGCAAAATAGCAATAATCATTCGAGCTCTAGTCTCATCCTTCATTTAGATGTAGGGATAATAACAGAAGCACTAACAGTAATTCTCCTAGAATTAACAGAAGTTTTGAAGGTCGGGAGTGTGAAGGTTTTGAGCACTATCAAGTAGAGTGTTCGAGTTTTTTGAAAGGGGAGAAGAAAAGTATGATTGTTACTCTATCAGATGATAAGCCAACTGTCGACAGCGACTATGAGGAACATGGTGGAGCCTTGTTTGATTGCGTTGCAGAGGATGTAACTCCAGATGTTGAAGACAACATGTTTTAAAATAATAATATTGATAGTATTGATGACGGTGCTGAGTCTAAAGTTGTTAACTAGAATATTGACCAATTGCACATGAAATGGGAAGAGCATCAGATAGTGTTGAAACAACAGAAGGATTGGATTCAGGTCATGTTGGAAGATAATCATCGTCTGCTATCCATGTTATCCACTTTCAAACTTAAGTTGAAAGCTGTTCGTATGGATTTTGAAACCCTATCCAATTATGTCAGGATGCTTAATTCTAGCACGCAAGGCTTGGACACTATTTTGAAAGTTGGCAAGATCAGGATGGATAAAAAAGGTATAGGATTTTCTGATAACGGTCAATAG

mRNA sequence

ATGAAAGTTACGACCATTGAAGAAGCAAATGACATTGATACATTGAAGTTGGATGAGTTGTTTGCGTCATTACAAACGTCTGAGCTCACTTTTGATGATCAGGGTGACAAGAAAGGTAGGTCTCATCCTTCATTTAGATGTAGGGATAATAACAGAAGCACTAACAGTAATTCTCCTAGAATTAACAGAAGTTTTGAAGGTCGGGAGTGTGAAGGTTTTGAGCACTATCAAGTAGAGTGTTCGAGTTTTTTGAAAGGGGAGAAGAAAAGTATGATTGTTACTCTATCAGATGATAAGCCAACTGTCGACAGCGACTATGAGGAACATGGTGGAGCCTTGTTTGATTGCGTTGCAGAGGATGTAACTCCAGATAATATTGACCAATTGCACATGAAATGGGAAGAGCATCAGATAGTGTTGAAACAACAGAAGGATTGGATTCAGGTCATGTTGGAAGATAATCATCGTCTGCTATCCATGTTATCCACTTTCAAACTTAAGTTGAAAGCTGTTCGTATGGATTTTGAAACCCTATCCAATTATGTCAGGATGCTTAATTCTAGCACGCAAGGCTTGGACACTATTTTGAAAGTTGGCAAGATCAGGATGGATAAAAAAGGTATAGGATTTTCTGATAACGGTCAATAG

Coding sequence (CDS)

ATGAAAGTTACGACCATTGAAGAAGCAAATGACATTGATACATTGAAGTTGGATGAGTTGTTTGCGTCATTACAAACGTCTGAGCTCACTTTTGATGATCAGGGTGACAAGAAAGGTAGGTCTCATCCTTCATTTAGATGTAGGGATAATAACAGAAGCACTAACAGTAATTCTCCTAGAATTAACAGAAGTTTTGAAGGTCGGGAGTGTGAAGGTTTTGAGCACTATCAAGTAGAGTGTTCGAGTTTTTTGAAAGGGGAGAAGAAAAGTATGATTGTTACTCTATCAGATGATAAGCCAACTGTCGACAGCGACTATGAGGAACATGGTGGAGCCTTGTTTGATTGCGTTGCAGAGGATGTAACTCCAGATAATATTGACCAATTGCACATGAAATGGGAAGAGCATCAGATAGTGTTGAAACAACAGAAGGATTGGATTCAGGTCATGTTGGAAGATAATCATCGTCTGCTATCCATGTTATCCACTTTCAAACTTAAGTTGAAAGCTGTTCGTATGGATTTTGAAACCCTATCCAATTATGTCAGGATGCTTAATTCTAGCACGCAAGGCTTGGACACTATTTTGAAAGTTGGCAAGATCAGGATGGATAAAAAAGGTATAGGATTTTCTGATAACGGTCAATAG

Protein sequence

MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKKGRSHPSFRCRDNNRSTNSNSPRINRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGALFDCVAEDVTPDNIDQLHMKWEEHQIVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILKVGKIRMDKKGIGFSDNGQ
Homology
BLAST of PI0027399 vs. ExPASy TrEMBL
Match: A0A5A7UD40 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold441G00270 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.8e-32
Identity = 100/245 (40.82%), Postives = 136/245 (55.51%), Query Frame = 0

Query: 1   MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKK--GRSHPSFRCRDNN------- 60
           MKVTT +EAND+  +KLDELF SL+T EL   +   KK  G +  S     NN       
Sbjct: 82  MKVTTTDEANDVTAMKLDELFGSLRTFELNLGEGNSKKKYGVAFSSNYLSSNNSINLNIR 141

Query: 61  --------RSTNSNSPRINRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVD 120
                    S  S + R +RS    E +GFEHYQ EC++FLK ++K +IVTLSDD+ T D
Sbjct: 142 RENEKGDRESRFSKNDRSSRSIRCHEYDGFEHYQAECATFLKCKRKRLIVTLSDDEATSD 201

Query: 121 SDYEEHGGALFDCVAED--------------------------VTPDNIDQLHMKWEEHQ 180
           S+ E+ G AL   + E+                          +T    D L  KWE++Q
Sbjct: 202 SESEKIGRALTSTLIENEPSKKGGSNKQKGAITCIDYQGFSLCITSVGCD-LARKWEKYQ 261

Query: 181 IVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILK 203
           IVLKQQK+ IQ ++E+NH L+S ++  K++LK  R +FE LS +V+ML S T+ LD+IL 
Sbjct: 262 IVLKQQKERIQALIEENHHLMSCIAILKVELKEARYNFEYLSKFVKMLTSWTKTLDSILN 321

BLAST of PI0027399 vs. ExPASy TrEMBL
Match: A0A5A7TJC1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00490 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.6e-29
Identity = 87/233 (37.34%), Postives = 128/233 (54.94%), Query Frame = 0

Query: 1   MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKKGRSHPSFRCRDNNRSTNSNSPR 60
           MKVTTIEE ND+  +KLDELF SL+T EL  ++  ++  + + + +   N++    +   
Sbjct: 16  MKVTTIEEVNDLSKMKLDELFGSLRTFELHLEEDYERGEKDYGTSKFEKNSKGIRCH--- 75

Query: 61  INRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGALFDCVA-- 120
                   ECEGF H Q EC+++LK +KKS++ TLSD++  ++SD EE G AL   +   
Sbjct: 76  --------ECEGFGHIQSECTTYLKCKKKSLVATLSDEENYLESDDEEVGIALISSIILN 135

Query: 121 EDVTPDNIDQ-----------------LHMKWEEHQIVLKQQKDWIQVMLEDNHRLLSML 180
           E+   + I Q                 L  KWEE Q  +  Q++ IQ ++E+N   LS +
Sbjct: 136 EEGMENEISQVPDQQATMSNKSLNEITLKRKWEEDQATIVYQQERIQYLMEENQSFLSSI 195

Query: 181 STFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILKVGKIRMDKKGIGFSDNG 215
            T K +LK  R  FE LS  V+M+   T  LD +L  GK   DK+G+GFS+ G
Sbjct: 196 VTLKAELKEARNQFEELSKSVKMMTGGTHKLDDLLGQGKRCNDKRGLGFSEIG 237

BLAST of PI0027399 vs. ExPASy TrEMBL
Match: A0A1S4E3G5 (uncharacterized protein LOC107991877 OS=Cucumis melo OX=3656 GN=LOC107991877 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 92/265 (34.72%), Postives = 134/265 (50.57%), Query Frame = 0

Query: 1   MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKK-------------GRSH----- 60
           MKVTTIEEAND+ T+KLDELF SL+T EL   +   +K                H     
Sbjct: 47  MKVTTIEEANDLSTMKLDELFGSLRTFELHLGEDTIRKKFGLALTSVKEESTEDHKVSLN 106

Query: 61  ----------PSFRCRDNNRSTNSNSP----RINRSFEGRECEGFEHYQVECSSFLKGEK 120
                       +R +D+ RS     P    + ++     ECEGF H Q +C+++LK +K
Sbjct: 107 NDSLVIRGIADKYRRKDHERSEKDYGPSKFEKNDKGIRCHECEGFGHIQTKCATYLKRKK 166

Query: 121 KSMIVTLSDDKPTVDSDYEEHGGALFDCV------AEDVTPDNIDQ-------------L 180
           KS++ T S+++    SD EE G AL   +       E+V    IDQ             L
Sbjct: 167 KSLVATFSNEEDYSKSDEEEVGMALISIINENKEEVENVNAQTIDQQESVSDDSLNESAL 226

Query: 181 HMKWEEHQIVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSST 215
             KW+E Q ++  Q++WIQ ++E+N   LS + T K +LK  R  FE L+  ++ML + T
Sbjct: 227 KRKWKEDQAIIIHQQEWIQCLMEENQSFLSSIVTLKTELKEARNQFEELTKSMKMLTNGT 286

BLAST of PI0027399 vs. ExPASy TrEMBL
Match: A0A5D3DD57 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001180 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-28
Identity = 76/176 (43.18%), Postives = 106/176 (60.23%), Query Frame = 0

Query: 54  TNSNSPRINRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGAL 113
           ++S S + +RSF+  ECEGF HYQ EC +FLK + KS+ VTLSD++ + DSD E  G  L
Sbjct: 68  SDSQSLKNDRSFKCHECEGFRHYQAECVTFLKRKNKSLAVTLSDEESSSDSDGENFGTTL 127

Query: 114 FDCVAEDVTPDN-------------------IDQLHMKWEEHQIVLKQQKDWIQVMLEDN 173
             CV E+ +  +                    D+L  KWEE Q V K QK+ IQ +LEDN
Sbjct: 128 ISCVLENESEVSKTEFVLTLKDRKTNSSQLKYDELLSKWEEDQEVFKVQKERIQALLEDN 187

Query: 174 HRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILKVGKIRMDKKGIGF 211
           H L+SM+   K+ LK V+ +F++LS  VR+L   TQ LD +L  GKI+ +KK +G+
Sbjct: 188 HHLMSMIYALKMDLKDVQNEFDSLSKSVRLLFPKTQSLDNLLSEGKIKSNKKDLGY 243

BLAST of PI0027399 vs. ExPASy TrEMBL
Match: A0A5A7T1K8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003220 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.3e-28
Identity = 92/274 (33.58%), Postives = 134/274 (48.91%), Query Frame = 0

Query: 1   MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKKG--------------------- 60
           MKVTTIEEAND+ T+KLDELF SL+T EL   +   +K                      
Sbjct: 104 MKVTTIEEANDLSTMKLDELFGSLRTFELHLGEDTIRKKFGLALTSVKEESTEDHKVSLN 163

Query: 61  ----------------RSHPSFRCRDNNRSTNSNSP----RINRSFEGRECEGFEHYQVE 120
                            S   +R +D+ RS     P    + ++     ECEGF H Q +
Sbjct: 164 NDSLVIRATQPRISSFSSSGQYRRKDHERSEKDYGPSKFEKNDKGIRCHECEGFGHIQTK 223

Query: 121 CSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGALFDCV------AEDVTPDNIDQ----- 180
           C+++LK +KKS++ T S+++    SD EE G AL   +       E+V    IDQ     
Sbjct: 224 CATYLKRKKKSLVATFSNEEDYSKSDEEEVGMALISIINENKEEVENVNAQTIDQQESVS 283

Query: 181 --------LHMKWEEHQIVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSN 215
                   L  KW+E Q ++  Q++WIQ ++E+N   LS + T K +LK  R  FE L+ 
Sbjct: 284 DDSLNESALKRKWKEDQAIIIHQQEWIQCLMEENQSFLSSIVTLKTELKEARNQFEELTK 343

BLAST of PI0027399 vs. NCBI nr
Match: KAA0053130.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95505.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 5.9e-32
Identity = 100/245 (40.82%), Postives = 136/245 (55.51%), Query Frame = 0

Query: 1   MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKK--GRSHPSFRCRDNN------- 60
           MKVTT +EAND+  +KLDELF SL+T EL   +   KK  G +  S     NN       
Sbjct: 82  MKVTTTDEANDVTAMKLDELFGSLRTFELNLGEGNSKKKYGVAFSSNYLSSNNSINLNIR 141

Query: 61  --------RSTNSNSPRINRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVD 120
                    S  S + R +RS    E +GFEHYQ EC++FLK ++K +IVTLSDD+ T D
Sbjct: 142 RENEKGDRESRFSKNDRSSRSIRCHEYDGFEHYQAECATFLKCKRKRLIVTLSDDEATSD 201

Query: 121 SDYEEHGGALFDCVAED--------------------------VTPDNIDQLHMKWEEHQ 180
           S+ E+ G AL   + E+                          +T    D L  KWE++Q
Sbjct: 202 SESEKIGRALTSTLIENEPSKKGGSNKQKGAITCIDYQGFSLCITSVGCD-LARKWEKYQ 261

Query: 181 IVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILK 203
           IVLKQQK+ IQ ++E+NH L+S ++  K++LK  R +FE LS +V+ML S T+ LD+IL 
Sbjct: 262 IVLKQQKERIQALIEENHHLMSCIAILKVELKEARYNFEYLSKFVKMLTSWTKTLDSILN 321

BLAST of PI0027399 vs. NCBI nr
Match: KAA0043382.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-28
Identity = 87/233 (37.34%), Postives = 128/233 (54.94%), Query Frame = 0

Query: 1   MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKKGRSHPSFRCRDNNRSTNSNSPR 60
           MKVTTIEE ND+  +KLDELF SL+T EL  ++  ++  + + + +   N++    +   
Sbjct: 16  MKVTTIEEVNDLSKMKLDELFGSLRTFELHLEEDYERGEKDYGTSKFEKNSKGIRCH--- 75

Query: 61  INRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGALFDCVA-- 120
                   ECEGF H Q EC+++LK +KKS++ TLSD++  ++SD EE G AL   +   
Sbjct: 76  --------ECEGFGHIQSECTTYLKCKKKSLVATLSDEENYLESDDEEVGIALISSIILN 135

Query: 121 EDVTPDNIDQ-----------------LHMKWEEHQIVLKQQKDWIQVMLEDNHRLLSML 180
           E+   + I Q                 L  KWEE Q  +  Q++ IQ ++E+N   LS +
Sbjct: 136 EEGMENEISQVPDQQATMSNKSLNEITLKRKWEEDQATIVYQQERIQYLMEENQSFLSSI 195

Query: 181 STFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILKVGKIRMDKKGIGFSDNG 215
            T K +LK  R  FE LS  V+M+   T  LD +L  GK   DK+G+GFS+ G
Sbjct: 196 VTLKAELKEARNQFEELSKSVKMMTGGTHKLDDLLGQGKRCNDKRGLGFSEIG 237

BLAST of PI0027399 vs. NCBI nr
Match: XP_016902771.1 (PREDICTED: uncharacterized protein LOC107991877 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-28
Identity = 92/265 (34.72%), Postives = 134/265 (50.57%), Query Frame = 0

Query: 1   MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKK-------------GRSH----- 60
           MKVTTIEEAND+ T+KLDELF SL+T EL   +   +K                H     
Sbjct: 47  MKVTTIEEANDLSTMKLDELFGSLRTFELHLGEDTIRKKFGLALTSVKEESTEDHKVSLN 106

Query: 61  ----------PSFRCRDNNRSTNSNSP----RINRSFEGRECEGFEHYQVECSSFLKGEK 120
                       +R +D+ RS     P    + ++     ECEGF H Q +C+++LK +K
Sbjct: 107 NDSLVIRGIADKYRRKDHERSEKDYGPSKFEKNDKGIRCHECEGFGHIQTKCATYLKRKK 166

Query: 121 KSMIVTLSDDKPTVDSDYEEHGGALFDCV------AEDVTPDNIDQ-------------L 180
           KS++ T S+++    SD EE G AL   +       E+V    IDQ             L
Sbjct: 167 KSLVATFSNEEDYSKSDEEEVGMALISIINENKEEVENVNAQTIDQQESVSDDSLNESAL 226

Query: 181 HMKWEEHQIVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSST 215
             KW+E Q ++  Q++WIQ ++E+N   LS + T K +LK  R  FE L+  ++ML + T
Sbjct: 227 KRKWKEDQAIIIHQQEWIQCLMEENQSFLSSIVTLKTELKEARNQFEELTKSMKMLTNGT 286

BLAST of PI0027399 vs. NCBI nr
Match: KAA0051793.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK21448.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 6.7e-28
Identity = 76/176 (43.18%), Postives = 106/176 (60.23%), Query Frame = 0

Query: 54  TNSNSPRINRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGAL 113
           ++S S + +RSF+  ECEGF HYQ EC +FLK + KS+ VTLSD++ + DSD E  G  L
Sbjct: 68  SDSQSLKNDRSFKCHECEGFRHYQAECVTFLKRKNKSLAVTLSDEESSSDSDGENFGTTL 127

Query: 114 FDCVAEDVTPDN-------------------IDQLHMKWEEHQIVLKQQKDWIQVMLEDN 173
             CV E+ +  +                    D+L  KWEE Q V K QK+ IQ +LEDN
Sbjct: 128 ISCVLENESEVSKTEFVLTLKDRKTNSSQLKYDELLSKWEEDQEVFKVQKERIQALLEDN 187

Query: 174 HRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILKVGKIRMDKKGIGF 211
           H L+SM+   K+ LK V+ +F++LS  VR+L   TQ LD +L  GKI+ +KK +G+
Sbjct: 188 HHLMSMIYALKMDLKDVQNEFDSLSKSVRLLFPKTQSLDNLLSEGKIKSNKKDLGY 243

BLAST of PI0027399 vs. NCBI nr
Match: KAA0035461.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31064.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 8.8e-28
Identity = 92/274 (33.58%), Postives = 134/274 (48.91%), Query Frame = 0

Query: 1   MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKKG--------------------- 60
           MKVTTIEEAND+ T+KLDELF SL+T EL   +   +K                      
Sbjct: 104 MKVTTIEEANDLSTMKLDELFGSLRTFELHLGEDTIRKKFGLALTSVKEESTEDHKVSLN 163

Query: 61  ----------------RSHPSFRCRDNNRSTNSNSP----RINRSFEGRECEGFEHYQVE 120
                            S   +R +D+ RS     P    + ++     ECEGF H Q +
Sbjct: 164 NDSLVIRATQPRISSFSSSGQYRRKDHERSEKDYGPSKFEKNDKGIRCHECEGFGHIQTK 223

Query: 121 CSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGALFDCV------AEDVTPDNIDQ----- 180
           C+++LK +KKS++ T S+++    SD EE G AL   +       E+V    IDQ     
Sbjct: 224 CATYLKRKKKSLVATFSNEEDYSKSDEEEVGMALISIINENKEEVENVNAQTIDQQESVS 283

Query: 181 --------LHMKWEEHQIVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSN 215
                   L  KW+E Q ++  Q++WIQ ++E+N   LS + T K +LK  R  FE L+ 
Sbjct: 284 DDSLNESALKRKWKEDQAIIIHQQEWIQCLMEENQSFLSSIVTLKTELKEARNQFEELTK 343

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UD402.8e-3240.82Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold441G... [more]
A0A5A7TJC18.6e-2937.34Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G... [more]
A0A1S4E3G51.1e-2834.72uncharacterized protein LOC107991877 OS=Cucumis melo OX=3656 GN=LOC107991877 PE=... [more]
A0A5D3DD573.3e-2843.18Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G... [more]
A0A5A7T1K84.3e-2833.58Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G... [more]
Match NameE-valueIdentityDescription
KAA0053130.15.9e-3240.82gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95505.1 gag-pol polyprotein [... [more]
KAA0043382.11.8e-2837.34gag-pol polyprotein [Cucumis melo var. makuwa][more]
XP_016902771.12.3e-2834.72PREDICTED: uncharacterized protein LOC107991877 [Cucumis melo][more]
KAA0051793.16.7e-2843.18gag-pol polyprotein [Cucumis melo var. makuwa] >TYK21448.1 gag-pol polyprotein [... [more]
KAA0035461.18.8e-2833.58gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31064.1 gag-pol polyprotein [... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0027399.1PI0027399.1mRNA