Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTACGACCATTGAAGAAGCAAATGACATTGATACATTGAAGTTGGATGAGTTGTTTGCGTCATTACAAACGTCTGAGCTCACTTTTGATGATCAGGGTGACAAGAAAGGTAGGGTGTGGCATTTGATACGCATAATTGATACGCGATGTTGATTGTTATTGTTGATTTTATTCCTACTTCTGCATTGCTGATTCTAATGATATGTCGTTTAACGTACAATTTTTCCTCTTGCTCGCCCAAGTATAAGCGGAGCAAGAGGTTTCCTGGATCAGGGTCGCCCAAGAAAGGTCAGGGTCGAACACAGGTAATTTCTATCAAATGAGCTGTGAAATGCGTGCTTCTATACCAAGCGGTATAGATTAACGTATAAAGCGATGTAAACTTATGGAAGCCTAAGCTACTTATTTACATAGAGACATTTGCAGGAGAATGGGTTATGGATACGAAGGCATGCAATCTAACTTGTATGAGAATGGGAAGGAACATGCTACATTTTGGGCGATCTACATGTATGCTCTATGTTCAATGCGATATGATTAAGTAGAGAATCTTATAATTAAGGCGAGCACTTCTCGGTACCAAACGCCACACTTGCTCGCCTCTCGGGACGCAAATGATTAAGATAGTTCTACCTTCTTATCTAGGCGTTCCTAATTATAAACATCATAGTTAACTCTCTAATTAAGGCGACAACCTTTCGGCGCCTAGTGCCACACTTACTTCCTCTCGGAATGCAAATGAATGGAGTTAAAACGCCAGAATGAAGTTTTTTTCCAAACTTCATTCCACACATGCTTAGTTATGTCCTTGCTACTTACTCTCTCGAGTAGTTGGCGACTAGCGCTGGCCAAGCGAATTAGCTTGCCTAAGCATGATGACAGTTATAATAGAATTCCTTATTAAACACGCAATATACAATTCAACTACTTTAAATGTAAACATGCAATTGAAAAGTAGAGAAATGGTAGAATGTAGAGGGATGAAATATATTGTATTAATACTGTAGGCCTTGCGGCCACGAAATACATATTTTTGTACAACACAAGTAAATACATAAAATGGATGAAAAAGGGGATGTGTCGAGTTGCGGAATGCATTTACTTGCATTCCTTAGCTCTTTTACAAGTTAGGTGGAAAGTGTTTGGGAAAGTCTCTCTCTCTCTCTAATCTTCTCTCTTGAGCTCTTGCCGGATTGTTGATTGGAGAAAGGGTGGAGGATTGATACTGCAAATGGGGAGAACTCTAATAGGCGTTCTACCCTAGCCATCCTTAAGGGATGACCTCCTCTCGATGATTAAGCACTTGGAGTTGGGAGTATTTATATGTATGCTTTTGGCGGGAAGCATTTAATGCTCTTCTGTACAGTGTCCTTCTCGCGACGAAAGCATTTCATGTTAAGTCACACCATCTCCAACTACGATTCTTGTCTTTTAGCGAGTCATCATCGCATAGTGTTGTACTGGCAGTTCACCTTTGATTTTAGTTCGCCAGATGCTCTTCTTAACGCCTAAATGCAATGTGGCTCGCCTACTTTTCCTCTCTTCTCCTTCCTGCATGCAAAAACACTTGAAAGCACAATTTCTCATAATGACTTATGCAAAGCTCATTCTTAAATCATTACATGTTCGCACTGCAAACTACGCGTTAAGACCATTTATTCCGTGTTTTACCCTCATTGCTTTGCCTAAAAGGCTATAATAACTTGTATTTATACGAGTTATCAGCATTGCATTCTGTTGGTGATGAAGATTTTCAGCAGAACAAAGAGTGTCACCATGATGATAATTTAGCTGATTCCATACCCTTTTAACTAAACAGTTCTCAAAGGTTGTTCGTCAGTTTAATAAAAGGTTAGGGAATTATGGATGTCAGTACAACAGAGAGCAAAATAGCAATAATCATTCGAGCTCTAGTCTCATCCTTCATTTAGATGTAGGGATAATAACAGAAGCACTAACAGTAATTCTCCTAGAATTAACAGAAGTTTTGAAGGTCGGGAGTGTGAAGGTTTTGAGCACTATCAAGTAGAGTGTTCGAGTTTTTTGAAAGGGGAGAAGAAAAGTATGATTGTTACTCTATCAGATGATAAGCCAACTGTCGACAGCGACTATGAGGAACATGGTGGAGCCTTGTTTGATTGCGTTGCAGAGGATGTAACTCCAGATGTTGAAGACAACATGTTTTAAAATAATAATATTGATAGTATTGATGACGGTGCTGAGTCTAAAGTTGTTAACTAGAATATTGACCAATTGCACATGAAATGGGAAGAGCATCAGATAGTGTTGAAACAACAGAAGGATTGGATTCAGGTCATGTTGGAAGATAATCATCGTCTGCTATCCATGTTATCCACTTTCAAACTTAAGTTGAAAGCTGTTCGTATGGATTTTGAAACCCTATCCAATTATGTCAGGATGCTTAATTCTAGCACGCAAGGCTTGGACACTATTTTGAAAGTTGGCAAGATCAGGATGGATAAAAAAGGTATAGGATTTTCTGATAACGGTCAATAG
mRNA sequence
ATGAAAGTTACGACCATTGAAGAAGCAAATGACATTGATACATTGAAGTTGGATGAGTTGTTTGCGTCATTACAAACGTCTGAGCTCACTTTTGATGATCAGGGTGACAAGAAAGGTAGGTCTCATCCTTCATTTAGATGTAGGGATAATAACAGAAGCACTAACAGTAATTCTCCTAGAATTAACAGAAGTTTTGAAGGTCGGGAGTGTGAAGGTTTTGAGCACTATCAAGTAGAGTGTTCGAGTTTTTTGAAAGGGGAGAAGAAAAGTATGATTGTTACTCTATCAGATGATAAGCCAACTGTCGACAGCGACTATGAGGAACATGGTGGAGCCTTGTTTGATTGCGTTGCAGAGGATGTAACTCCAGATAATATTGACCAATTGCACATGAAATGGGAAGAGCATCAGATAGTGTTGAAACAACAGAAGGATTGGATTCAGGTCATGTTGGAAGATAATCATCGTCTGCTATCCATGTTATCCACTTTCAAACTTAAGTTGAAAGCTGTTCGTATGGATTTTGAAACCCTATCCAATTATGTCAGGATGCTTAATTCTAGCACGCAAGGCTTGGACACTATTTTGAAAGTTGGCAAGATCAGGATGGATAAAAAAGGTATAGGATTTTCTGATAACGGTCAATAG
Coding sequence (CDS)
ATGAAAGTTACGACCATTGAAGAAGCAAATGACATTGATACATTGAAGTTGGATGAGTTGTTTGCGTCATTACAAACGTCTGAGCTCACTTTTGATGATCAGGGTGACAAGAAAGGTAGGTCTCATCCTTCATTTAGATGTAGGGATAATAACAGAAGCACTAACAGTAATTCTCCTAGAATTAACAGAAGTTTTGAAGGTCGGGAGTGTGAAGGTTTTGAGCACTATCAAGTAGAGTGTTCGAGTTTTTTGAAAGGGGAGAAGAAAAGTATGATTGTTACTCTATCAGATGATAAGCCAACTGTCGACAGCGACTATGAGGAACATGGTGGAGCCTTGTTTGATTGCGTTGCAGAGGATGTAACTCCAGATAATATTGACCAATTGCACATGAAATGGGAAGAGCATCAGATAGTGTTGAAACAACAGAAGGATTGGATTCAGGTCATGTTGGAAGATAATCATCGTCTGCTATCCATGTTATCCACTTTCAAACTTAAGTTGAAAGCTGTTCGTATGGATTTTGAAACCCTATCCAATTATGTCAGGATGCTTAATTCTAGCACGCAAGGCTTGGACACTATTTTGAAAGTTGGCAAGATCAGGATGGATAAAAAAGGTATAGGATTTTCTGATAACGGTCAATAG
Protein sequence
MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKKGRSHPSFRCRDNNRSTNSNSPRINRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGALFDCVAEDVTPDNIDQLHMKWEEHQIVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILKVGKIRMDKKGIGFSDNGQ
Homology
BLAST of PI0027399 vs. ExPASy TrEMBL
Match:
A0A5A7UD40 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold441G00270 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 2.8e-32
Identity = 100/245 (40.82%), Postives = 136/245 (55.51%), Query Frame = 0
Query: 1 MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKK--GRSHPSFRCRDNN------- 60
MKVTT +EAND+ +KLDELF SL+T EL + KK G + S NN
Sbjct: 82 MKVTTTDEANDVTAMKLDELFGSLRTFELNLGEGNSKKKYGVAFSSNYLSSNNSINLNIR 141
Query: 61 --------RSTNSNSPRINRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVD 120
S S + R +RS E +GFEHYQ EC++FLK ++K +IVTLSDD+ T D
Sbjct: 142 RENEKGDRESRFSKNDRSSRSIRCHEYDGFEHYQAECATFLKCKRKRLIVTLSDDEATSD 201
Query: 121 SDYEEHGGALFDCVAED--------------------------VTPDNIDQLHMKWEEHQ 180
S+ E+ G AL + E+ +T D L KWE++Q
Sbjct: 202 SESEKIGRALTSTLIENEPSKKGGSNKQKGAITCIDYQGFSLCITSVGCD-LARKWEKYQ 261
Query: 181 IVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILK 203
IVLKQQK+ IQ ++E+NH L+S ++ K++LK R +FE LS +V+ML S T+ LD+IL
Sbjct: 262 IVLKQQKERIQALIEENHHLMSCIAILKVELKEARYNFEYLSKFVKMLTSWTKTLDSILN 321
BLAST of PI0027399 vs. ExPASy TrEMBL
Match:
A0A5A7TJC1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00490 PE=4 SV=1)
HSP 1 Score: 137.1 bits (344), Expect = 8.6e-29
Identity = 87/233 (37.34%), Postives = 128/233 (54.94%), Query Frame = 0
Query: 1 MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKKGRSHPSFRCRDNNRSTNSNSPR 60
MKVTTIEE ND+ +KLDELF SL+T EL ++ ++ + + + + N++ +
Sbjct: 16 MKVTTIEEVNDLSKMKLDELFGSLRTFELHLEEDYERGEKDYGTSKFEKNSKGIRCH--- 75
Query: 61 INRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGALFDCVA-- 120
ECEGF H Q EC+++LK +KKS++ TLSD++ ++SD EE G AL +
Sbjct: 76 --------ECEGFGHIQSECTTYLKCKKKSLVATLSDEENYLESDDEEVGIALISSIILN 135
Query: 121 EDVTPDNIDQ-----------------LHMKWEEHQIVLKQQKDWIQVMLEDNHRLLSML 180
E+ + I Q L KWEE Q + Q++ IQ ++E+N LS +
Sbjct: 136 EEGMENEISQVPDQQATMSNKSLNEITLKRKWEEDQATIVYQQERIQYLMEENQSFLSSI 195
Query: 181 STFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILKVGKIRMDKKGIGFSDNG 215
T K +LK R FE LS V+M+ T LD +L GK DK+G+GFS+ G
Sbjct: 196 VTLKAELKEARNQFEELSKSVKMMTGGTHKLDDLLGQGKRCNDKRGLGFSEIG 237
BLAST of PI0027399 vs. ExPASy TrEMBL
Match:
A0A1S4E3G5 (uncharacterized protein LOC107991877 OS=Cucumis melo OX=3656 GN=LOC107991877 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 92/265 (34.72%), Postives = 134/265 (50.57%), Query Frame = 0
Query: 1 MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKK-------------GRSH----- 60
MKVTTIEEAND+ T+KLDELF SL+T EL + +K H
Sbjct: 47 MKVTTIEEANDLSTMKLDELFGSLRTFELHLGEDTIRKKFGLALTSVKEESTEDHKVSLN 106
Query: 61 ----------PSFRCRDNNRSTNSNSP----RINRSFEGRECEGFEHYQVECSSFLKGEK 120
+R +D+ RS P + ++ ECEGF H Q +C+++LK +K
Sbjct: 107 NDSLVIRGIADKYRRKDHERSEKDYGPSKFEKNDKGIRCHECEGFGHIQTKCATYLKRKK 166
Query: 121 KSMIVTLSDDKPTVDSDYEEHGGALFDCV------AEDVTPDNIDQ-------------L 180
KS++ T S+++ SD EE G AL + E+V IDQ L
Sbjct: 167 KSLVATFSNEEDYSKSDEEEVGMALISIINENKEEVENVNAQTIDQQESVSDDSLNESAL 226
Query: 181 HMKWEEHQIVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSST 215
KW+E Q ++ Q++WIQ ++E+N LS + T K +LK R FE L+ ++ML + T
Sbjct: 227 KRKWKEDQAIIIHQQEWIQCLMEENQSFLSSIVTLKTELKEARNQFEELTKSMKMLTNGT 286
BLAST of PI0027399 vs. ExPASy TrEMBL
Match:
A0A5D3DD57 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001180 PE=4 SV=1)
HSP 1 Score: 135.2 bits (339), Expect = 3.3e-28
Identity = 76/176 (43.18%), Postives = 106/176 (60.23%), Query Frame = 0
Query: 54 TNSNSPRINRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGAL 113
++S S + +RSF+ ECEGF HYQ EC +FLK + KS+ VTLSD++ + DSD E G L
Sbjct: 68 SDSQSLKNDRSFKCHECEGFRHYQAECVTFLKRKNKSLAVTLSDEESSSDSDGENFGTTL 127
Query: 114 FDCVAEDVTPDN-------------------IDQLHMKWEEHQIVLKQQKDWIQVMLEDN 173
CV E+ + + D+L KWEE Q V K QK+ IQ +LEDN
Sbjct: 128 ISCVLENESEVSKTEFVLTLKDRKTNSSQLKYDELLSKWEEDQEVFKVQKERIQALLEDN 187
Query: 174 HRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILKVGKIRMDKKGIGF 211
H L+SM+ K+ LK V+ +F++LS VR+L TQ LD +L GKI+ +KK +G+
Sbjct: 188 HHLMSMIYALKMDLKDVQNEFDSLSKSVRLLFPKTQSLDNLLSEGKIKSNKKDLGY 243
BLAST of PI0027399 vs. ExPASy TrEMBL
Match:
A0A5A7T1K8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003220 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 4.3e-28
Identity = 92/274 (33.58%), Postives = 134/274 (48.91%), Query Frame = 0
Query: 1 MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKKG--------------------- 60
MKVTTIEEAND+ T+KLDELF SL+T EL + +K
Sbjct: 104 MKVTTIEEANDLSTMKLDELFGSLRTFELHLGEDTIRKKFGLALTSVKEESTEDHKVSLN 163
Query: 61 ----------------RSHPSFRCRDNNRSTNSNSP----RINRSFEGRECEGFEHYQVE 120
S +R +D+ RS P + ++ ECEGF H Q +
Sbjct: 164 NDSLVIRATQPRISSFSSSGQYRRKDHERSEKDYGPSKFEKNDKGIRCHECEGFGHIQTK 223
Query: 121 CSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGALFDCV------AEDVTPDNIDQ----- 180
C+++LK +KKS++ T S+++ SD EE G AL + E+V IDQ
Sbjct: 224 CATYLKRKKKSLVATFSNEEDYSKSDEEEVGMALISIINENKEEVENVNAQTIDQQESVS 283
Query: 181 --------LHMKWEEHQIVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSN 215
L KW+E Q ++ Q++WIQ ++E+N LS + T K +LK R FE L+
Sbjct: 284 DDSLNESALKRKWKEDQAIIIHQQEWIQCLMEENQSFLSSIVTLKTELKEARNQFEELTK 343
BLAST of PI0027399 vs. NCBI nr
Match:
KAA0053130.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95505.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 148.7 bits (374), Expect = 5.9e-32
Identity = 100/245 (40.82%), Postives = 136/245 (55.51%), Query Frame = 0
Query: 1 MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKK--GRSHPSFRCRDNN------- 60
MKVTT +EAND+ +KLDELF SL+T EL + KK G + S NN
Sbjct: 82 MKVTTTDEANDVTAMKLDELFGSLRTFELNLGEGNSKKKYGVAFSSNYLSSNNSINLNIR 141
Query: 61 --------RSTNSNSPRINRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVD 120
S S + R +RS E +GFEHYQ EC++FLK ++K +IVTLSDD+ T D
Sbjct: 142 RENEKGDRESRFSKNDRSSRSIRCHEYDGFEHYQAECATFLKCKRKRLIVTLSDDEATSD 201
Query: 121 SDYEEHGGALFDCVAED--------------------------VTPDNIDQLHMKWEEHQ 180
S+ E+ G AL + E+ +T D L KWE++Q
Sbjct: 202 SESEKIGRALTSTLIENEPSKKGGSNKQKGAITCIDYQGFSLCITSVGCD-LARKWEKYQ 261
Query: 181 IVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILK 203
IVLKQQK+ IQ ++E+NH L+S ++ K++LK R +FE LS +V+ML S T+ LD+IL
Sbjct: 262 IVLKQQKERIQALIEENHHLMSCIAILKVELKEARYNFEYLSKFVKMLTSWTKTLDSILN 321
BLAST of PI0027399 vs. NCBI nr
Match:
KAA0043382.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 137.1 bits (344), Expect = 1.8e-28
Identity = 87/233 (37.34%), Postives = 128/233 (54.94%), Query Frame = 0
Query: 1 MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKKGRSHPSFRCRDNNRSTNSNSPR 60
MKVTTIEE ND+ +KLDELF SL+T EL ++ ++ + + + + N++ +
Sbjct: 16 MKVTTIEEVNDLSKMKLDELFGSLRTFELHLEEDYERGEKDYGTSKFEKNSKGIRCH--- 75
Query: 61 INRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGALFDCVA-- 120
ECEGF H Q EC+++LK +KKS++ TLSD++ ++SD EE G AL +
Sbjct: 76 --------ECEGFGHIQSECTTYLKCKKKSLVATLSDEENYLESDDEEVGIALISSIILN 135
Query: 121 EDVTPDNIDQ-----------------LHMKWEEHQIVLKQQKDWIQVMLEDNHRLLSML 180
E+ + I Q L KWEE Q + Q++ IQ ++E+N LS +
Sbjct: 136 EEGMENEISQVPDQQATMSNKSLNEITLKRKWEEDQATIVYQQERIQYLMEENQSFLSSI 195
Query: 181 STFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILKVGKIRMDKKGIGFSDNG 215
T K +LK R FE LS V+M+ T LD +L GK DK+G+GFS+ G
Sbjct: 196 VTLKAELKEARNQFEELSKSVKMMTGGTHKLDDLLGQGKRCNDKRGLGFSEIG 237
BLAST of PI0027399 vs. NCBI nr
Match:
XP_016902771.1 (PREDICTED: uncharacterized protein LOC107991877 [Cucumis melo])
HSP 1 Score: 136.7 bits (343), Expect = 2.3e-28
Identity = 92/265 (34.72%), Postives = 134/265 (50.57%), Query Frame = 0
Query: 1 MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKK-------------GRSH----- 60
MKVTTIEEAND+ T+KLDELF SL+T EL + +K H
Sbjct: 47 MKVTTIEEANDLSTMKLDELFGSLRTFELHLGEDTIRKKFGLALTSVKEESTEDHKVSLN 106
Query: 61 ----------PSFRCRDNNRSTNSNSP----RINRSFEGRECEGFEHYQVECSSFLKGEK 120
+R +D+ RS P + ++ ECEGF H Q +C+++LK +K
Sbjct: 107 NDSLVIRGIADKYRRKDHERSEKDYGPSKFEKNDKGIRCHECEGFGHIQTKCATYLKRKK 166
Query: 121 KSMIVTLSDDKPTVDSDYEEHGGALFDCV------AEDVTPDNIDQ-------------L 180
KS++ T S+++ SD EE G AL + E+V IDQ L
Sbjct: 167 KSLVATFSNEEDYSKSDEEEVGMALISIINENKEEVENVNAQTIDQQESVSDDSLNESAL 226
Query: 181 HMKWEEHQIVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSST 215
KW+E Q ++ Q++WIQ ++E+N LS + T K +LK R FE L+ ++ML + T
Sbjct: 227 KRKWKEDQAIIIHQQEWIQCLMEENQSFLSSIVTLKTELKEARNQFEELTKSMKMLTNGT 286
BLAST of PI0027399 vs. NCBI nr
Match:
KAA0051793.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK21448.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 135.2 bits (339), Expect = 6.7e-28
Identity = 76/176 (43.18%), Postives = 106/176 (60.23%), Query Frame = 0
Query: 54 TNSNSPRINRSFEGRECEGFEHYQVECSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGAL 113
++S S + +RSF+ ECEGF HYQ EC +FLK + KS+ VTLSD++ + DSD E G L
Sbjct: 68 SDSQSLKNDRSFKCHECEGFRHYQAECVTFLKRKNKSLAVTLSDEESSSDSDGENFGTTL 127
Query: 114 FDCVAEDVTPDN-------------------IDQLHMKWEEHQIVLKQQKDWIQVMLEDN 173
CV E+ + + D+L KWEE Q V K QK+ IQ +LEDN
Sbjct: 128 ISCVLENESEVSKTEFVLTLKDRKTNSSQLKYDELLSKWEEDQEVFKVQKERIQALLEDN 187
Query: 174 HRLLSMLSTFKLKLKAVRMDFETLSNYVRMLNSSTQGLDTILKVGKIRMDKKGIGF 211
H L+SM+ K+ LK V+ +F++LS VR+L TQ LD +L GKI+ +KK +G+
Sbjct: 188 HHLMSMIYALKMDLKDVQNEFDSLSKSVRLLFPKTQSLDNLLSEGKIKSNKKDLGY 243
BLAST of PI0027399 vs. NCBI nr
Match:
KAA0035461.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31064.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 134.8 bits (338), Expect = 8.8e-28
Identity = 92/274 (33.58%), Postives = 134/274 (48.91%), Query Frame = 0
Query: 1 MKVTTIEEANDIDTLKLDELFASLQTSELTFDDQGDKKG--------------------- 60
MKVTTIEEAND+ T+KLDELF SL+T EL + +K
Sbjct: 104 MKVTTIEEANDLSTMKLDELFGSLRTFELHLGEDTIRKKFGLALTSVKEESTEDHKVSLN 163
Query: 61 ----------------RSHPSFRCRDNNRSTNSNSP----RINRSFEGRECEGFEHYQVE 120
S +R +D+ RS P + ++ ECEGF H Q +
Sbjct: 164 NDSLVIRATQPRISSFSSSGQYRRKDHERSEKDYGPSKFEKNDKGIRCHECEGFGHIQTK 223
Query: 121 CSSFLKGEKKSMIVTLSDDKPTVDSDYEEHGGALFDCV------AEDVTPDNIDQ----- 180
C+++LK +KKS++ T S+++ SD EE G AL + E+V IDQ
Sbjct: 224 CATYLKRKKKSLVATFSNEEDYSKSDEEEVGMALISIINENKEEVENVNAQTIDQQESVS 283
Query: 181 --------LHMKWEEHQIVLKQQKDWIQVMLEDNHRLLSMLSTFKLKLKAVRMDFETLSN 215
L KW+E Q ++ Q++WIQ ++E+N LS + T K +LK R FE L+
Sbjct: 284 DDSLNESALKRKWKEDQAIIIHQQEWIQCLMEENQSFLSSIVTLKTELKEARNQFEELTK 343
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UD40 | 2.8e-32 | 40.82 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold441G... | [more] |
A0A5A7TJC1 | 8.6e-29 | 37.34 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G... | [more] |
A0A1S4E3G5 | 1.1e-28 | 34.72 | uncharacterized protein LOC107991877 OS=Cucumis melo OX=3656 GN=LOC107991877 PE=... | [more] |
A0A5D3DD57 | 3.3e-28 | 43.18 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G... | [more] |
A0A5A7T1K8 | 4.3e-28 | 33.58 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G... | [more] |
Match Name | E-value | Identity | Description | |
KAA0053130.1 | 5.9e-32 | 40.82 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95505.1 gag-pol polyprotein [... | [more] |
KAA0043382.1 | 1.8e-28 | 37.34 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
XP_016902771.1 | 2.3e-28 | 34.72 | PREDICTED: uncharacterized protein LOC107991877 [Cucumis melo] | [more] |
KAA0051793.1 | 6.7e-28 | 43.18 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK21448.1 gag-pol polyprotein [... | [more] |
KAA0035461.1 | 8.8e-28 | 33.58 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31064.1 gag-pol polyprotein [... | [more] |
Match Name | E-value | Identity | Description | |