PI0027179 (gene) Melon (PI 482460) v1

Overview


Name	PI0027179
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	50S ribosomal protein L12, chloroplastic-like
Location	chr09: 18960335 .. 18961031 (+)
RNA-Seq Expression	PI0027179
Synteny	PI0027179

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCTATCTTCTTTCTTTCTTTCTATTCAATTCTTCACCAAAAGAAGAAGAAAAAATGGCTTCTTCACTCTCAACTCTCACCCTCAATTCCCCATTTCACCTTTCTCATTCCCATTCTTCATTCTCCCCTCATTCCTTCAAATCCACAACCCTCCAATTTCCCTCCCGCCACCGCACCATCCACCTCCGTCCCATTGCCGCTGTTTCTGCACCCGAGAAAATCGAAAAACTCGGCTCCGACATCTCCAGCCTCACCCTTGAAGAGGCTCGGATTCTCGTTGACTTCCTCCAAGACAAGCTCGGTGTCTCCGCTGCAGCCTTCGCCCCGGCTGCTGTCGTGGCAGCACCCGGAGGCGCTGTTGGCGGCGAAGCGGCAGCGGAGGTGGTAGAGGAGAAGACGGAATTTGATGTGGTGATTGAGGATGTGCCTAGTAATGCTAGGATTGCTGTGATTAAGGCAGTGAGAGCATTGACAAGCTTGGCTTTGAAGGAAGCTAAAGAACTTATTGAAGGATTGCCAAAGAAGTTTAAAGAAGGGGTTTCAAAAGAAGAAGCTGAGGATGCTAAGAAACAGCTTGAAGAAGCTGGAGCTAAAATTGCCATTGTTTAATCATTGGGGAATGGAAAAAGAAAAGAGTTTATTTGTTTTAGAGAAACTTACTTAATCTTGAGGATTTTTTTTTTTTTTTTTTTTTTT

mRNA sequence

ATCCTATCTTCTTTCTTTCTTTCTATTCAATTCTTCACCAAAAGAAGAAGAAAAAATGGCTTCTTCACTCTCAACTCTCACCCTCAATTCCCCATTTCACCTTTCTCATTCCCATTCTTCATTCTCCCCTCATTCCTTCAAATCCACAACCCTCCAATTTCCCTCCCGCCACCGCACCATCCACCTCCGTCCCATTGCCGCTGTTTCTGCACCCGAGAAAATCGAAAAACTCGGCTCCGACATCTCCAGCCTCACCCTTGAAGAGGCTCGGATTCTCGTTGACTTCCTCCAAGACAAGCTCGGTGTCTCCGCTGCAGCCTTCGCCCCGGCTGCTGTCGTGGCAGCACCCGGAGGCGCTGTTGGCGGCGAAGCGGCAGCGGAGGTGGTAGAGGAGAAGACGGAATTTGATGTGGTGATTGAGGATGTGCCTAGTAATGCTAGGATTGCTGTGATTAAGGCAGTGAGAGCATTGACAAGCTTGGCTTTGAAGGAAGCTAAAGAACTTATTGAAGGATTGCCAAAGAAGTTTAAAGAAGGGGTTTCAAAAGAAGAAGCTGAGGATGCTAAGAAACAGCTTGAAGAAGCTGGAGCTAAAATTGCCATTGTTTAATCATTGGGGAATGGAAAAAGAAAAGAGTTTATTTGTTTTAGAGAAACTTACTTAATCTTGAGGATTTTTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCTTCTTCACTCTCAACTCTCACCCTCAATTCCCCATTTCACCTTTCTCATTCCCATTCTTCATTCTCCCCTCATTCCTTCAAATCCACAACCCTCCAATTTCCCTCCCGCCACCGCACCATCCACCTCCGTCCCATTGCCGCTGTTTCTGCACCCGAGAAAATCGAAAAACTCGGCTCCGACATCTCCAGCCTCACCCTTGAAGAGGCTCGGATTCTCGTTGACTTCCTCCAAGACAAGCTCGGTGTCTCCGCTGCAGCCTTCGCCCCGGCTGCTGTCGTGGCAGCACCCGGAGGCGCTGTTGGCGGCGAAGCGGCAGCGGAGGTGGTAGAGGAGAAGACGGAATTTGATGTGGTGATTGAGGATGTGCCTAGTAATGCTAGGATTGCTGTGATTAAGGCAGTGAGAGCATTGACAAGCTTGGCTTTGAAGGAAGCTAAAGAACTTATTGAAGGATTGCCAAAGAAGTTTAAAGAAGGGGTTTCAAAAGAAGAAGCTGAGGATGCTAAGAAACAGCTTGAAGAAGCTGGAGCTAAAATTGCCATTGTTTAA

Protein sequence

MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSRHRTIHLRPIAAVSAPEKIEKLGSDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKIAIV

Homology

[Close]

BLAST of PI0027179 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-52
Identity = 129/189 (68.25%), Postives = 151/189 (79.89%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSR------HRTIHLRPIAAVSAPE 60
           MAS+LST+TL SP   S + S+ +   F   TL+FP R       R   LRP+AAV APE
Sbjct: 1   MASTLSTITLRSP-SPSTATSTHASIPFPKKTLEFPIRTPKLQNRRATFLRPLAAVEAPE 60

Query: 61  KIEKLGSDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEK 120
           K+ +LG +IS+LTL +A+ LV++LQDKLGV+AA+FAPAAVVAAPG A     A  VVEEK
Sbjct: 61  KVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA---EAPAVVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQL 180
           TEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEGVSK+EAEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EEAGAKIAI 184
           EEAGAK++I
Sbjct: 181 EEAGAKVSI 185

[Close]

BLAST of PI0027179 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-51
Identity = 127/189 (67.20%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSRHRTIH------LRPIAAVSAPE 60
           MAS+LST+TL SP   S + S+ +   F    L+FP R   +H      LRP+AAV APE
Sbjct: 1   MASTLSTITLRSP-SPSTASSTHASIPFPKKALEFPIRTPKLHHRRATFLRPLAAVEAPE 60

Query: 61  KIEKLGSDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEK 120
           K+ +LG +IS+LTL +A+ LV++LQDKLGV+AA+FAPAAV AAPG A     A  VVEEK
Sbjct: 61  KVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA---EAPAVVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQL 180
           TEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEGVSK+EAEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EEAGAKIAI 184
           EEAGAK++I
Sbjct: 181 EEAGAKVSI 185

[Close]

BLAST of PI0027179 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 203.4 bits (516), Expect = 2.3e-51
Identity = 129/194 (66.49%), Postives = 147/194 (75.77%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFP----------SRHRTIHLRPIAAV 60
           MA++ +  TLN P   SH +SS  P       LQFP          S  RT  LRPIAAV
Sbjct: 1   MAATTTMATLNLPSLTSHPNSSTFPK--HPQPLQFPFRTTTNPISLSSTRTTRLRPIAAV 60

Query: 61  SAPEKIEKLGSDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEV 120
            APEKIE+LG+ +S LTLEEAR+LVD+LQDKLGVSAA+FAPAA VAAPG       AA  
Sbjct: 61  EAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD---AAPA 120

Query: 121 VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDA 180
           VEEKTEFDV I++VPSNARI+VIKAVRALTSL LKEAKELIEGLPKK KEGVSK++AEDA
Sbjct: 121 VEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDA 180

Query: 181 KKQLEEAGAKIAIV 185
           KKQLE+AGAK++IV
Sbjct: 181 KKQLEDAGAKVSIV 189

[Close]

BLAST of PI0027179 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.5e-50
Identity = 121/166 (72.89%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 29  KSTTLQFPSR----------HRTIHLRPIAAVSAPEKIEKLGSDISSLTLEEARILVDFL 88
           ++TT++FPSR          HR  HLRPIAAV APEKIEK+GS+ISSLTLEEARILVD+L
Sbjct: 29  RTTTIEFPSRFGGGSSSTLTHRATHLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYL 88

Query: 89  QDKLGVSAAAFAP-AAVVAAPGGAVGGEAAAEVVEEKTEFDVVIEDVPSNARIAVIKAVR 148
           QDK GVS  + AP AA VAAP  A GG  AA VVEE+TEFDVVI +VPS++RIAVIKAVR
Sbjct: 89  QDKFGVSPLSLAPAAAAVAAP--ADGG--AAAVVEEQTEFDVVINEVPSSSRIAVIKAVR 148

Query: 149 ALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKIAI 184
           ALTSLALKEAKELIEGLPKKFKEG++K+EAE+AKK LEEAGAK++I
Sbjct: 149 ALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAKVSI 190

[Close]

BLAST of PI0027179 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-49
Identity = 126/187 (67.38%), Postives = 149/187 (79.68%), Query Frame = 0


Query: 6   STLTLNSPFHLSHSHSSFSPHSF--KSTTLQFP------SRHRTIHLRPIAAVSAPEKIE 65
           +TL++ +    S   +S S H F  K T ++FP      S HR I+LRPI+AV APEKIE
Sbjct: 4   TTLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSSSHRAINLRPISAVEAPEKIE 63

Query: 66  KLGSDISSLTLEEARILVDFLQDKLGVSAAAFAP-AAVVAAPGGAVGGEAAAEVVEEKTE 125
           K+GS+ISSLTLEEARILVD+LQDK GVS  + AP AA VAAP  A GG  AA VVEE+TE
Sbjct: 64  KIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP--ADGG--AAAVVEEQTE 123

Query: 126 FDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEE 184
           FDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEG++K+EAE+AKK LEE
Sbjct: 124 FDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEE 183

[Close]

BLAST of PI0027179 vs. ExPASy TrEMBL
Match: A0A5A7T262 (50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001220 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.1e-76
Identity = 170/184 (92.39%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSRHRTIHLRPIAAVSAPEKIEKLG 60
           MASSLSTLTLN+PF LS+SHS FSPHSF+STTL FP R  T+ LRPIAAVSAPEKIEKLG
Sbjct: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATL-LRPIAAVSAPEKIEKLG 60

Query: 61  SDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEKTEFDVV 120
           SDISSLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGGAVGG+AAAE VEEKTEFDVV
Sbjct: 61  SDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVV 120

Query: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180
           IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK
Sbjct: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180

Query: 181 IAIV 185
           IAIV
Sbjct: 181 IAIV 183

[Close]

BLAST of PI0027179 vs. ExPASy TrEMBL
Match: A0A1S3C863 (50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103498080 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.7e-76
Identity = 169/184 (91.85%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSRHRTIHLRPIAAVSAPEKIEKLG 60
           MASSLSTLTLN+PF LS+SHS FSPHSF+STTL FP R  T+ LRPIAAVSAPEKIEKLG
Sbjct: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATL-LRPIAAVSAPEKIEKLG 60

Query: 61  SDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEKTEFDVV 120
           SDISSLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGGAVGG+AAAE VEEKTEFDVV
Sbjct: 61  SDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVV 120

Query: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180
           IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLE+AGAK
Sbjct: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAK 180

Query: 181 IAIV 185
           IAIV
Sbjct: 181 IAIV 183

[Close]

BLAST of PI0027179 vs. ExPASy TrEMBL
Match: A0A0A0KSG5 (SocL12 (Chloroplast ribosomal protein) OS=Cucumis sativus OX=3659 GN=Csa_5G524750 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.0e-75
Identity = 168/184 (91.30%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSRHRTIHLRPIAAVSAPEKIEKLG 60
           MASSLSTLTLN+P HL  SHSSFSP SF+ TTLQFP R R  HLRPIAAVSAPEKIEKLG
Sbjct: 1   MASSLSTLTLNTPLHLPRSHSSFSPLSFRPTTLQFPYR-RPTHLRPIAAVSAPEKIEKLG 60

Query: 61  SDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEKTEFDVV 120
           SDISSLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAE VEEKTEFDVV
Sbjct: 61  SDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEAVEEKTEFDVV 120

Query: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180
           IEDVPSNARIAVIK+VRA+TSLALKEAKELIEGLPKKFKEGVSKEEA+DAKKQLEEAGAK
Sbjct: 121 IEDVPSNARIAVIKSVRAMTSLALKEAKELIEGLPKKFKEGVSKEEADDAKKQLEEAGAK 180

Query: 181 IAIV 185
           IAIV
Sbjct: 181 IAIV 183

[Close]

BLAST of PI0027179 vs. ExPASy TrEMBL
Match: A0A6J1JTI3 (50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489595 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.1e-69
Identity = 160/184 (86.96%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSRHRTIHLRPIAAVSAPEKIEKLG 60
           MAS+LSTLTL +P  LSHSHSSFS  S K TTL FPS HR   LRPIAAVSAPEKIEKLG
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFPS-HRATRLRPIAAVSAPEKIEKLG 60

Query: 61  SDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEKTEFDVV 120
           SDIS+LTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGG  GG+ AAE VEEKTEFDVV
Sbjct: 61  SDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDVAAEAVEEKTEFDVV 120

Query: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180
           IE+VPSNARIAVIK+VRALT+LALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK
Sbjct: 121 IEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180

Query: 181 IAIV 185
           I IV
Sbjct: 181 ITIV 183

[Close]

BLAST of PI0027179 vs. ExPASy TrEMBL
Match: A0A6J1FMH9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445547 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.5e-69
Identity = 161/184 (87.50%), Postives = 168/184 (91.30%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSRHRTIHLRPIAAVSAPEKIEKLG 60
           MAS+LSTLTL +P  LSHSHSSFS  S K TTL F S HRT  LRPIAAVSAPEKIEKLG
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLS-HRTTRLRPIAAVSAPEKIEKLG 60

Query: 61  SDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEKTEFDVV 120
           SDIS+LTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGG  GG+AAAE VEEKTEFDVV
Sbjct: 61  SDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVV 120

Query: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180
           IE+VPSNARIAVIK+VRALT+LALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK
Sbjct: 121 IEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180

Query: 181 IAIV 185
           I IV
Sbjct: 181 ITIV 183

[Close]

BLAST of PI0027179 vs. NCBI nr
Match: KAA0037532.1 (50S ribosomal protein L12 [Cucumis melo var. makuwa] >TYK02007.1 50S ribosomal protein L12 [Cucumis melo var. makuwa])

HSP 1 Score: 295.0 bits (754), Expect = 4.3e-76
Identity = 170/184 (92.39%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSRHRTIHLRPIAAVSAPEKIEKLG 60
           MASSLSTLTLN+PF LS+SHS FSPHSF+STTL FP R  T+ LRPIAAVSAPEKIEKLG
Sbjct: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATL-LRPIAAVSAPEKIEKLG 60

Query: 61  SDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEKTEFDVV 120
           SDISSLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGGAVGG+AAAE VEEKTEFDVV
Sbjct: 61  SDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVV 120

Query: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180
           IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK
Sbjct: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180

Query: 181 IAIV 185
           IAIV
Sbjct: 181 IAIV 183

[Close]

BLAST of PI0027179 vs. NCBI nr
Match: XP_008458778.1 (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo])

HSP 1 Score: 293.9 bits (751), Expect = 9.7e-76
Identity = 169/184 (91.85%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSRHRTIHLRPIAAVSAPEKIEKLG 60
           MASSLSTLTLN+PF LS+SHS FSPHSF+STTL FP R  T+ LRPIAAVSAPEKIEKLG
Sbjct: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATL-LRPIAAVSAPEKIEKLG 60

Query: 61  SDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEKTEFDVV 120
           SDISSLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGGAVGG+AAAE VEEKTEFDVV
Sbjct: 61  SDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVV 120

Query: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180
           IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLE+AGAK
Sbjct: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAK 180

Query: 181 IAIV 185
           IAIV
Sbjct: 181 IAIV 183

[Close]

BLAST of PI0027179 vs. NCBI nr
Match: XP_004142800.1 (50S ribosomal protein L12, chloroplastic [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 6.3e-75
Identity = 168/184 (91.30%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSRHRTIHLRPIAAVSAPEKIEKLG 60
           MASSLSTLTLN+P HL  SHSSFSP SF+ TTLQFP R R  HLRPIAAVSAPEKIEKLG
Sbjct: 1   MASSLSTLTLNTPLHLPRSHSSFSPLSFRPTTLQFPYR-RPTHLRPIAAVSAPEKIEKLG 60

Query: 61  SDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEKTEFDVV 120
           SDISSLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAE VEEKTEFDVV
Sbjct: 61  SDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEAVEEKTEFDVV 120

Query: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180
           IEDVPSNARIAVIK+VRA+TSLALKEAKELIEGLPKKFKEGVSKEEA+DAKKQLEEAGAK
Sbjct: 121 IEDVPSNARIAVIKSVRAMTSLALKEAKELIEGLPKKFKEGVSKEEADDAKKQLEEAGAK 180

Query: 181 IAIV 185
           IAIV
Sbjct: 181 IAIV 183

[Close]

BLAST of PI0027179 vs. NCBI nr
Match: XP_038890576.1 (50S ribosomal protein L12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 1.8e-74
Identity = 167/191 (87.43%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSR-------HRTIHLRPIAAVSAP 60
           MAS+LS LTL+SP HLS+SHSS S HSFKSTTLQFPS        HR  HLRPIAA+SAP
Sbjct: 1   MASTLSILTLHSPSHLSYSHSSLSTHSFKSTTLQFPSHLSSIAVSHRATHLRPIAAISAP 60

Query: 61  EKIEKLGSDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEE 120
           EKIEKLGSDIS+LTLEEAR+LVDFLQDKLGVSAA+FAPAAVVAAPGG  GGEAAAE VEE
Sbjct: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAASFAPAAVVAAPGGTAGGEAAAEAVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 185
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of PI0027179 vs. NCBI nr
Match: KAG6578656.1 (50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.1 bits (697), Expect = 1.8e-69
Identity = 160/184 (86.96%), Postives = 168/184 (91.30%), Query Frame = 0


Query: 1   MASSLSTLTLNSPFHLSHSHSSFSPHSFKSTTLQFPSRHRTIHLRPIAAVSAPEKIEKLG 60
           MAS+LSTLTL +P  LSHSHSSFS  SFK TTL F S HR   LRPIAAVSAPEKIEKLG
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSFKPTTLPFAS-HRATRLRPIAAVSAPEKIEKLG 60

Query: 61  SDISSLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEKTEFDVV 120
           SDIS+LTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGG  GG+AAAE VEEKTEFDVV
Sbjct: 61  SDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVV 120

Query: 121 IEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAK 180
           IE+VPSNARIAVIK+VRALT+LALKEAKELIEGLPKKFKEGVSK+EAEDAKKQLEEAGAK
Sbjct: 121 IEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAK 180

Query: 181 IAIV 185
           I IV
Sbjct: 181 ITIV 183

[Close]

BLAST of PI0027179 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 199.9 bits (507), Expect = 1.8e-51
Identity = 121/166 (72.89%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 29  KSTTLQFPSR----------HRTIHLRPIAAVSAPEKIEKLGSDISSLTLEEARILVDFL 88
           ++TT++FPSR          HR  HLRPIAAV APEKIEK+GS+ISSLTLEEARILVD+L
Sbjct: 29  RTTTIEFPSRFGGGSSSTLTHRATHLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYL 88

Query: 89  QDKLGVSAAAFAP-AAVVAAPGGAVGGEAAAEVVEEKTEFDVVIEDVPSNARIAVIKAVR 148
           QDK GVS  + AP AA VAAP  A GG  AA VVEE+TEFDVVI +VPS++RIAVIKAVR
Sbjct: 89  QDKFGVSPLSLAPAAAAVAAP--ADGG--AAAVVEEQTEFDVVINEVPSSSRIAVIKAVR 148

Query: 149 ALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKIAI 184
           ALTSLALKEAKELIEGLPKKFKEG++K+EAE+AKK LEEAGAK++I
Sbjct: 149 ALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAKVSI 190

[Close]

BLAST of PI0027179 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-50
Identity = 126/187 (67.38%), Postives = 149/187 (79.68%), Query Frame = 0


Query: 6   STLTLNSPFHLSHSHSSFSPHSF--KSTTLQFP------SRHRTIHLRPIAAVSAPEKIE 65
           +TL++ +    S   +S S H F  K T ++FP      S HR I+LRPI+AV APEKIE
Sbjct: 4   TTLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSSSHRAINLRPISAVEAPEKIE 63

Query: 66  KLGSDISSLTLEEARILVDFLQDKLGVSAAAFAP-AAVVAAPGGAVGGEAAAEVVEEKTE 125
           K+GS+ISSLTLEEARILVD+LQDK GVS  + AP AA VAAP  A GG  AA VVEE+TE
Sbjct: 64  KIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP--ADGG--AAAVVEEQTE 123

Query: 126 FDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEE 184
           FDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEG++K+EAE+AKK LEE
Sbjct: 124 FDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEE 183

[Close]

BLAST of PI0027179 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 158.7 bits (400), Expect = 4.5e-39
Identity = 102/180 (56.67%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 17  SHSHSSFSPHSFKS--TTLQFP----------SRHRTIHLRPIAAVSAPEKIEKLGSDIS 76
           S S    S H F S   +++FP            HR I+L PI+AV  P+KI+K+GS+IS
Sbjct: 16  SFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVKTPKKIKKIGSEIS 75

Query: 77  SLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEVVEEKTEFDVVIEDV 136
           SLTLEE+RILVD++QDK GVS    APAA    P    GG  A+  VE +T FDVVI DV
Sbjct: 76  SLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGGATAS--VERQTTFDVVINDV 135

Query: 137 PSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKIAIV 185
           P   RIAVI A+RA+TSL+L E+KELIEG PKKFKEGV+K+EAE+ K QLEEAGAK++IV
Sbjct: 136 PRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDKTQLEEAGAKVSIV 193

[Close]

BLAST of PI0027179 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-15
Identity = 55/136 (40.44%), Postives = 83/136 (61.03%), Query Frame = 0


Query: 54  EKIEKLGSDISSLTLEEARILVDFLQDKLGVS----AAAFAPAAVVAAPGG--AVGGEAA 113
           E + K+ +++S+LTL E   L + L+ KL +S     AA  P   +   G   + GGE  
Sbjct: 43  ENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGEGK 102

Query: 114 AEVVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEA 173
            +  E KT FDV+++   + ++I VIK VR +T+L LKEAK+L+E  P   K+GVSKEEA
Sbjct: 103 EKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEA 162

Query: 174 EDAKKQLEEAGAKIAI 184
           E   ++L+  GAK+A+
Sbjct: 163 EKIIEKLKAVGAKVAM 178

[Close]

BLAST of PI0027179 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 64.7 bits (156), Expect = 8.9e-11
Identity = 56/155 (36.13%), Postives = 83/155 (53.55%), Query Frame = 0


Query: 39  HRTIHL----RPIAAVSAPE----KIEKLGSDISSLTLEEARILVDFLQDKLGVSAAAFA 98
           HRT  L    R + AV++PE    K+E++  D+  L   E          K+G++    A
Sbjct: 17  HRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSA 76

Query: 99  PAAVVAAPGGAVGGEAAAEVVE--EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAK 158
            A       G+VG  +A+   +  EKT FDV +E   + ++I VIK +RA T L LKEAK
Sbjct: 77  VAVT-----GSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAK 136

Query: 159 ELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKIAI 184
            L+E  P   K G++KEEAE   ++L+  GA +A+
Sbjct: 137 ALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVAL 166

The following BLAST results are available for this feature:

BLAST of PI0027179 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36688	3.5e-52	68.25	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P24929	1.7e-51	67.20	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P02398	2.3e-51	66.49	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36210	2.5e-50	72.89	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36212	2.1e-49	67.38	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of PI0027179 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T262	2.1e-76	92.39	50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C863	4.7e-76	91.85	50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0KSG5	3.0e-75	91.30	SocL12 (Chloroplast ribosomal protein) OS=Cucumis sativus OX=3659 GN=Csa_5G52475...	[more]
A0A6J1JTI3	1.1e-69	86.96	50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FMH9	1.5e-69	87.50	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of PI0027179 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037532.1	4.3e-76	92.39	50S ribosomal protein L12 [Cucumis melo var. makuwa] >TYK02007.1 50S ribosomal p...	[more]
XP_008458778.1	9.7e-76	91.85	PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo]	[more]
XP_004142800.1	6.3e-75	91.30	50S ribosomal protein L12, chloroplastic [Cucumis sativus]	[more]
XP_038890576.1	1.8e-74	87.43	50S ribosomal protein L12, chloroplastic-like [Benincasa hispida]	[more]
KAG6578656.1	1.8e-69	86.96	50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of PI0027179 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27830.1	1.8e-51	72.89	ribosomal protein L12-A	[more]
AT3G27850.1	1.5e-50	67.38	ribosomal protein L12-C	[more]
AT3G27840.1	4.5e-39	56.67	ribosomal protein L12-B	[more]
AT4G36420.1	2.7e-15	40.44	Ribosomal protein L12 family protein	[more]
AT4G37660.1	8.9e-11	36.13	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 117..183 e-value: 2.8E-24 score: 85.3
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 55..112 e-value: 4.5E-12 score: 47.8
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 55..119
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 55..183 e-value: 5.4E-32 score: 108.8
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..183
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 51..184 score: 22.410975
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 54..183 e-value: 2.51866E-38 score: 126.116
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 55..104 e-value: 1.0E-12 score: 47.5
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 113..183 e-value: 9.5E-26 score: 91.7
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 112..183
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027179.1	PI0027179.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome