PI0026965 (gene) Melon (PI 482460) v1

Overview
NamePI0026965
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr04: 15227054 .. 15227935 (+)
RNA-Seq ExpressionPI0026965
SyntenyPI0026965
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCTTATTGGGCCAGCGCTGTAGAGCAGCCCTCACCTATGCAGATCTAAGGATAATTCCGTTTGAACAGAAGTTCATAGTTAGCTCAGGATTAAGATTAAGTTACCTAGGTCATAAATAATCGAAATAGTCAGTTTTATACAGTCAACGGTGTTAAACTTTAAATGTGACTATTTCATGGTTCCAGTCTTATGTAAACTCTTTACATAGGATGCCCCACTTCCATGTCTCTACATGAATGATTTAGGATCACCTCGTTTGTACTAAATACAAAGCGGACCGCATCCATAGTGTCCCCAGAATAAGGCGCCCAACCTTATTCATATACTATAGACCGTTTGGGCTATACTCGAACTTGATCCACGTTTATGTCTCTACATAAAGTTCAAGTCTACACTAGATAGCCTTGTGACCTTTAGTTTATTGGATTCAAGATTATAGTATTCTATTTTCACTAATTTGTCCTCAATAACCATTTTATTGAATAGAATATAATTTAAACTACAAACTACGAATTTTAGGACATAAATTCCAACAGTTTTTCCTTTGGGTTAACGGTTTAAGGACCTATTTTCTGAAAACTGTTGGTTTGAGGTTCCATTGTTGTCGTTGAAGGTGTCGTCGAAGGATTCGCTTCGGATTTGTTGGGTTTGTTTTGGGCGCTTTGGAGACTTAGCGTTGGTTTCGGCAAGTGGCTTTGGGAGCTTAATTTCCTTTTTGATTGGGTAAGTATTATTGAAGTCTTATGTGAAATTTGTTGGGTTGAGATGGAAAATTTATTGGATTTTGTTACTTTGTTGTTTAGGATTTTGGTTCGCTGGGACCTTTTCGGGTTGACTCGGTTAAGGTACGGGACTTCCTCTACCGGACTAGCTAA

mRNA sequence

ATGGGAGGCTTATTGGGCCAGCGCTGTAGAGCAGCCCTCACCTATGCAGATCTAAGGATAATTCCGTTTGAACAGAAGTTCATAGTTAGCTCAGGATTAAGATTAAGTTACCTAGGTGTCGTCGAAGGATTCGCTTCGGATTTGTTGGGTTTGTTTTGGGCGCTTTGGAGACTTAGCGTTGGTTTCGGCAAGTGGCTTTGGGAGCTTAATTTCCTTTTTGATTGGGATTTTGGTTCGCTGGGACCTTTTCGGGTTGACTCGGTTAAGGTACGGGACTTCCTCTACCGGACTAGCTAA

Coding sequence (CDS)

ATGGGAGGCTTATTGGGCCAGCGCTGTAGAGCAGCCCTCACCTATGCAGATCTAAGGATAATTCCGTTTGAACAGAAGTTCATAGTTAGCTCAGGATTAAGATTAAGTTACCTAGGTGTCGTCGAAGGATTCGCTTCGGATTTGTTGGGTTTGTTTTGGGCGCTTTGGAGACTTAGCGTTGGTTTCGGCAAGTGGCTTTGGGAGCTTAATTTCCTTTTTGATTGGGATTTTGGTTCGCTGGGACCTTTTCGGGTTGACTCGGTTAAGGTACGGGACTTCCTCTACCGGACTAGCTAA

Protein sequence

MGGLLGQRCRAALTYADLRIIPFEQKFIVSSGLRLSYLGVVEGFASDLLGLFWALWRLSVGFGKWLWELNFLFDWDFGSLGPFRVDSVKVRDFLYRTS
Homology
[Close]
BLAST of PI0026965 vs. ExPASy TrEMBL
Match: A0A5D3CY86 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001000 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.2e-07
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1   MGGLLGQRCRAALTYADLRIIPFEQKFIVSSGLRLSYLG 40
           MGGLLGQR RAALTYADLRI+  EQKFIVS GLR SYLG
Sbjct: 831 MGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSYLG 869

[Close]
BLAST of PI0026965 vs. ExPASy TrEMBL
Match: A0A5D3BX92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00120 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-04
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 11  AALTYADLRIIPFEQKFIVSSGLRLSYLG 40
           + LTY DLR+IPFEQKFIVSSGLRLSYLG
Sbjct: 89  SCLTYVDLRVIPFEQKFIVSSGLRLSYLG 117

[Close]
BLAST of PI0026965 vs. NCBI nr
Match: TYK16320.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 8.7e-07
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1   MGGLLGQRCRAALTYADLRIIPFEQKFIVSSGLRLSYLG 40
           MGGLLGQR RAALTYADLRI+  EQKFIVS GLR SYLG
Sbjct: 831 MGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSYLG 869

[Close]
BLAST of PI0026965 vs. NCBI nr
Match: KAA0035081.1 (hypothetical protein E6C27_scaffold57G001500 [Cucumis melo var. makuwa] >TYK03598.1 hypothetical protein E5676_scaffold1369G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-04
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 11  AALTYADLRIIPFEQKFIVSSGLRLSYLG 40
           + LTY DLR+IPFEQKFIVSSGLRLSYLG
Sbjct: 89  SCLTYVDLRVIPFEQKFIVSSGLRLSYLG 117

The following BLAST results are available for this feature:
BLAST of PI0026965 vs.
Match NameE-valueIdentityDescription
BLAST of PI0026965 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CY864.2e-0784.62Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw... [more]
A0A5D3BX922.5e-0486.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of PI0026965 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK16320.18.7e-0784.62retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
KAA0035081.15.3e-0486.21hypothetical protein E6C27_scaffold57G001500 [Cucumis melo var. makuwa] >TYK0359... [more]
BLAST of PI0026965 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0026965.1PI0026965.1mRNA