PI0026961 (gene) Melon (PI 482460) v1

Overview
NamePI0026961
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionCell wall protein RBR3-like
Locationchr10: 13379739 .. 13381118 (-)
RNA-Seq ExpressionPI0026961
SyntenyPI0026961
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAGCGATTCAGGGCGGTTAAGGTGCACAAACCCCTTCGAAAGGGAGTTTGGGGGTACGCGACCAATTTTAGAATGACTTTCAAACAAAGATTCTCAATAGTGATCAGAAACGACATTGCTTCGTGTGGTCCAGCATACTACGTCAGGTAAAGTTGATACTTCCTAGTGGAAGTAATTTCCCATTCAACCTCTGCCCATGCGATTTTGGCCAATGTCTTCTTCATGTCCTTTTTTAATGTTGCTTCAATAAATATTTGTCCAGGCGCGTTAGGATCATTAGGCGGGCCATACAAGTTGTTGATCACAATGACATCAAAGTAAATGTGTTTTCCTTTGATCTACGCGTAGTTTTCCTCCTTATGGATAAAGTTTTCATAAAACATTCTTACAACATCTAGGAGAGCCGTAGAGCTCCCCTCGGAGAACTTCTTCCCCCCAAATTCTTTAATGGACACATAGAAAAAATCGAAAAGAGTTCCTTTGAACATGAAGAGACCCTTCTCGATTTTTATCTCATTGTTTATGTTTGTTGTTGTCGCTTAAACTTTGCCCATTCCTTCCTCGCCTTGAACCAAGTCTTCTTCCAGTTCTTCAGTTTGACTTGGCTCCACACGTTTGGGAAGTGGCCTCTTCTTCGTGTTTTCTTTGGCCTGAGGCACGTTTTCAGAATGCGAGGATTCTACTTCTTTCTTTCTCGCCTTTTTCTTGCTTACATTTGGAGACCAACACCCTTTGCATGCCTCCCCTATTGTTCTTCCTTCGTCGCTTATTCCTAGTGTTAATGCTTTAGGTGCTGTTTACTCTAGTCACATTGATTTACCATCTACTAATGTTACTTCGAATGTTGATCATGTAGTTGATCCCAATGTCAATAACAAGAGTACTAACATTGGTAGGTCTTTGACTGAATGTGTTGTTAAGGGTATATCTGTTATTGGGTTGTCTAATGTTAATGTTTCCACCTTGGACTCTACTGATGATTTGATTACTACAACTAAGTCTCCTATTGATGACGATCTTGTTTCCATATCCTCGGATGATAATTTGTCCTTGCTCATTTGGTCAAGCGTTTGTAAGAAGTCTGTTGATCACTCAGACTCTGCCTGTGACAAGCTACCATTCTCCACAGAGAAGGTCTCTATGACTTCTTCTCGCCCTAATTCATCTTCTCCAGTTACAGCTGCTCCTTGCAAAGGCCTTAAACGTATTACTGCCAAGGCTGGCCGTCGAAAAATTCCTCCTAATGTTCCAGCAGTTCTCATTGATGGTGTTTTTTTCTCACTGCGAAAAAATGTGCACAAATTGAAAATTGTTGTTCAATATCGGATTGCTAATGAATATAATGTTTTTGACAAACATCACTCTTTGATGTAA

mRNA sequence

ATGATTGAGCGATTCAGGGCGGTTAAGGTGCACAAACCCCTTCGAAAGGGAGTTTGGGGGTACGCGACCAATTTTAGAATGACTTTCAAACAAAGATTCTCAATAGTGATCAGAAACGACATTGCTTCGTGTGGTCCAGCATACTACGTCAGTGTTAATGCTTTAGGTGCTGTTTACTCTAGTCACATTGATTTACCATCTACTAATGTTACTTCGAATGTTGATCATGTAGTTGATCCCAATGTCAATAACAAGAGTACTAACATTGGTAGGTCTTTGACTGAATGTGTTGTTAAGGGTATATCTGTTATTGGGTTGTCTAATGTTAATGTTTCCACCTTGGACTCTACTGATGATTTGATTACTACAACTAAGTCTCCTATTGATGACGATCTTGTTTCCATATCCTCGGATGATAATTTGTCCTTGCTCATTTGGTCAAGCGTTTGTAAGAAGTCTGTTGATCACTCAGACTCTGCCTGTGACAAGCTACCATTCTCCACAGAGAAGGTCTCTATGACTTCTTCTCGCCCTAATTCATCTTCTCCAGTTACAGCTGCTCCTTGCAAAGGCCTTAAACGTATTACTGCCAAGGCTGGCCGTCGAAAAATTCCTCCTAATGTTCCAGCAGTTCTCATTGATGGTGTTTTTTTCTCACTGCGAAAAAATGTGCACAAATTGAAAATTGTTGTTCAATATCGGATTGCTAATGAATATAATGTTTTTGACAAACATCACTCTTTGATGTAA

Coding sequence (CDS)

ATGATTGAGCGATTCAGGGCGGTTAAGGTGCACAAACCCCTTCGAAAGGGAGTTTGGGGGTACGCGACCAATTTTAGAATGACTTTCAAACAAAGATTCTCAATAGTGATCAGAAACGACATTGCTTCGTGTGGTCCAGCATACTACGTCAGTGTTAATGCTTTAGGTGCTGTTTACTCTAGTCACATTGATTTACCATCTACTAATGTTACTTCGAATGTTGATCATGTAGTTGATCCCAATGTCAATAACAAGAGTACTAACATTGGTAGGTCTTTGACTGAATGTGTTGTTAAGGGTATATCTGTTATTGGGTTGTCTAATGTTAATGTTTCCACCTTGGACTCTACTGATGATTTGATTACTACAACTAAGTCTCCTATTGATGACGATCTTGTTTCCATATCCTCGGATGATAATTTGTCCTTGCTCATTTGGTCAAGCGTTTGTAAGAAGTCTGTTGATCACTCAGACTCTGCCTGTGACAAGCTACCATTCTCCACAGAGAAGGTCTCTATGACTTCTTCTCGCCCTAATTCATCTTCTCCAGTTACAGCTGCTCCTTGCAAAGGCCTTAAACGTATTACTGCCAAGGCTGGCCGTCGAAAAATTCCTCCTAATGTTCCAGCAGTTCTCATTGATGGTGTTTTTTTCTCACTGCGAAAAAATGTGCACAAATTGAAAATTGTTGTTCAATATCGGATTGCTAATGAATATAATGTTTTTGACAAACATCACTCTTTGATGTAA

Protein sequence

MIERFRAVKVHKPLRKGVWGYATNFRMTFKQRFSIVIRNDIASCGPAYYVSVNALGAVYSSHIDLPSTNVTSNVDHVVDPNVNNKSTNIGRSLTECVVKGISVIGLSNVNVSTLDSTDDLITTTKSPIDDDLVSISSDDNLSLLIWSSVCKKSVDHSDSACDKLPFSTEKVSMTSSRPNSSSPVTAAPCKGLKRITAKAGRRKIPPNVPAVLIDGVFFSLRKNVHKLKIVVQYRIANEYNVFDKHHSLM
Homology
[Close]
BLAST of PI0026961 vs. ExPASy TrEMBL
Match: A0A1S3C0F4 (uncharacterized protein LOC103495053 OS=Cucumis melo OX=3656 GN=LOC103495053 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-09
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 0 

Query: 175 SSRPNSSSPVTAAPCKGLKRITAKAGRRKIPPNVPAVLIDGVFFSLRKNVHKLKIVVQYR 234
           SS P    P      +  + IT KAGR+KIP N+P+V IDG+ F L +N+H+ K VVQ R
Sbjct: 85  SSVPTELKPARKKGQQIRRNITTKAGRKKIPLNIPSVPIDGISFHLEENIHRWKFVVQRR 144

Query: 235 IANEYNVFDKHHS 248
           IA+E N+ DKHHS
Sbjct: 145 IADEVNISDKHHS 157

[Close]
BLAST of PI0026961 vs. ExPASy TrEMBL
Match: A0A5D3DU39 (Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00080 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-09
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0 

Query: 193 KRITAKAGRRKIPPNVPAVLIDGVFFSLRKNVHKLKIVVQYRIANEYNVFDKHHSLM 250
           K IT K G RK+PPN+P++ IDG+ F L ++VH+ K VVQ R A+E N+ DKHHS +
Sbjct: 178 KVITTKTGHRKVPPNIPSIPIDGISFHLEESVHRWKYVVQRRFADEVNISDKHHSCL 234

[Close]
BLAST of PI0026961 vs. ExPASy TrEMBL
Match: A0A1S3BN53 (uncharacterized protein LOC103491875 OS=Cucumis melo OX=3656 GN=LOC103491875 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 0 

Query: 174 TSSRPNSSSPVTAAPCKGLKRITAKAGRRKIPPNVPAVLIDGVFFSLRKNVHKLKIVVQY 233
           +S  P +  P+     +  + IT K GR+KIPPN+P+V IDG+ F   +NV +LK +VQ 
Sbjct: 135 SSEVPVAQKPIKRKSQQNRRNITTKTGRKKIPPNIPSVPIDGISFHHEENVQRLKFMVQR 194

Query: 234 RIANEYNVFDKHHSLM 250
           R+A E NV DKH S M
Sbjct: 195 RLAVEVNVSDKHQSCM 210

[Close]
BLAST of PI0026961 vs. ExPASy TrEMBL
Match: A0A5A7UQ31 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001710 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.3e-08
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 193 KRITAKAGRRKIPPNVPAVLIDGVFFSLRKNVHKLKIVVQYRIANEYNVFDKHHS 248
           + IT K GR+KIP N+P+V IDG+FF L +NV   K ++Q RIA+E N+ DKHHS
Sbjct: 184 RNITTKVGRKKIPLNIPSVPIDGIFFHLEENVQCWKFIMQRRIADEVNISDKHHS 238

[Close]
BLAST of PI0026961 vs. ExPASy TrEMBL
Match: A0A1S3BZ31 (uncharacterized protein LOC103495162 OS=Cucumis melo OX=3656 GN=LOC103495162 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.3e-08
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 193 KRITAKAGRRKIPPNVPAVLIDGVFFSLRKNVHKLKIVVQYRIANEYNVFDKHHS 248
           + IT K GR+KIP N+P+V IDG+FF L +NV   K ++Q RIA+E N+ DKHHS
Sbjct: 184 RNITTKVGRKKIPLNIPSVPIDGIFFHLEENVQCWKFIMQRRIADEVNISDKHHS 238

[Close]
BLAST of PI0026961 vs. NCBI nr
Match: XP_008454699.1 (PREDICTED: uncharacterized protein LOC103495053 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-09
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 0 

Query: 175 SSRPNSSSPVTAAPCKGLKRITAKAGRRKIPPNVPAVLIDGVFFSLRKNVHKLKIVVQYR 234
           SS P    P      +  + IT KAGR+KIP N+P+V IDG+ F L +N+H+ K VVQ R
Sbjct: 85  SSVPTELKPARKKGQQIRRNITTKAGRKKIPLNIPSVPIDGISFHLEENIHRWKFVVQRR 144

Query: 235 IANEYNVFDKHHS 248
           IA+E N+ DKHHS
Sbjct: 145 IADEVNISDKHHS 157

[Close]
BLAST of PI0026961 vs. NCBI nr
Match: TYK27163.1 (cell wall protein RBR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-08
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0 

Query: 193 KRITAKAGRRKIPPNVPAVLIDGVFFSLRKNVHKLKIVVQYRIANEYNVFDKHHSLM 250
           K IT K G RK+PPN+P++ IDG+ F L ++VH+ K VVQ R A+E N+ DKHHS +
Sbjct: 178 KVITTKTGHRKVPPNIPSIPIDGISFHLEESVHRWKYVVQRRFADEVNISDKHHSCL 234

[Close]
BLAST of PI0026961 vs. NCBI nr
Match: XP_008450214.1 (PREDICTED: uncharacterized protein LOC103491875 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-08
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 0 

Query: 174 TSSRPNSSSPVTAAPCKGLKRITAKAGRRKIPPNVPAVLIDGVFFSLRKNVHKLKIVVQY 233
           +S  P +  P+     +  + IT K GR+KIPPN+P+V IDG+ F   +NV +LK +VQ 
Sbjct: 135 SSEVPVAQKPIKRKSQQNRRNITTKTGRKKIPPNIPSVPIDGISFHHEENVQRLKFMVQR 194

Query: 234 RIANEYNVFDKHHSLM 250
           R+A E NV DKH S M
Sbjct: 195 RLAVEVNVSDKHQSCM 210

[Close]
BLAST of PI0026961 vs. NCBI nr
Match: XP_008454855.1 (PREDICTED: uncharacterized protein LOC103495162 [Cucumis melo] >KAA0056416.1 uncharacterized protein E6C27_scaffold186G001710 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 6.9e-08
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 193 KRITAKAGRRKIPPNVPAVLIDGVFFSLRKNVHKLKIVVQYRIANEYNVFDKHHS 248
           + IT K GR+KIP N+P+V IDG+FF L +NV   K ++Q RIA+E N+ DKHHS
Sbjct: 184 RNITTKVGRKKIPLNIPSVPIDGIFFHLEENVQCWKFIMQRRIADEVNISDKHHS 238

[Close]
BLAST of PI0026961 vs. NCBI nr
Match: TYK05279.1 (uncharacterized protein E5676_scaffold108G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-07
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 193 KRITAKAGRRKIPPNVPAVLIDGVFFSLRKNVHKLKIVVQYRIANEYNVFDKHHS 248
           + IT K GR+KIP N+P+V IDG+ F L +NV + K V+Q RIA+E N+ DKHHS
Sbjct: 118 RNITTKVGRKKIPLNIPSVPIDGISFHLEENVQRWKFVMQRRIADEVNISDKHHS 172

The following BLAST results are available for this feature:
BLAST of PI0026961 vs.
Match NameE-valueIdentityDescription
BLAST of PI0026961 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C0F41.8e-0950.68uncharacterized protein LOC103495053 OS=Cucumis melo OX=3656 GN=LOC103495053 PE=... [more]
A0A5D3DU396.7e-0954.39Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A1S3BN532.5e-0846.05uncharacterized protein LOC103491875 OS=Cucumis melo OX=3656 GN=LOC103491875 PE=... [more]
A0A5A7UQ313.3e-0856.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3BZ313.3e-0856.36uncharacterized protein LOC103495162 OS=Cucumis melo OX=3656 GN=LOC103495162 PE=... [more]
BLAST of PI0026961 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008454699.13.6e-0950.68PREDICTED: uncharacterized protein LOC103495053 [Cucumis melo][more]
TYK27163.11.4e-0854.39cell wall protein RBR3-like [Cucumis melo var. makuwa][more]
XP_008450214.15.2e-0846.05PREDICTED: uncharacterized protein LOC103491875 [Cucumis melo][more]
XP_008454855.16.9e-0856.36PREDICTED: uncharacterized protein LOC103495162 [Cucumis melo] >KAA0056416.1 unc... [more]
TYK05279.11.2e-0756.36uncharacterized protein E5676_scaffold108G00960 [Cucumis melo var. makuwa][more]
BLAST of PI0026961 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0026961.1PI0026961.1mRNA