PI0026960 (gene) Melon (PI 482460) v1

Overview


Name	PI0026960
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr01: 6103414 .. 6105435 (-)
RNA-Seq Expression	PI0026960
Synteny	PI0026960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAGCGAACGTTTGCCATTATGTGCCATTTGCTTAGGACAGTCGCTGGATTAGCCTCGACCGAAGTCGTAGACGTTGAGGAGATGGTGGCGATGTTCCTTCACGTCCTAGCGTACGATGTGAAGAACCGAGTGGTCCAGCGGGAGTTTATGTGGTCCGGTGATAAAATTTCAAGGCATTTCAACATGGTGTTGATGGCCGTTGTACGTCTTCATGACGAGCTGATAAAAAAACCGCAACCAGTAATAAACAACTGCATAGATCCCCGCTGGCGTTGTTTCGAGGTTCGCCTCCTTCGATCCTTACCGTGTATAAATTTTGTAATGGCATAATCTAACAAGGCATTGTTCTTGTGAGGCCCAGAACTGTCTTGGTGCACTAGATGGCACATACATCAAGGTGAACATAGCGGTCACCGAGTGAGCATCGTATAGAACGCGGAAGGGGGAAGTTGCAACGAACGTCCTGGACGTCTGTGACACAAAGGGAAGTTTTGTGTATGTACTCGCTGGGTGGGAAGGGTCAGCCGCTGACTCGCGCATCCTTCGTGATGCTATTTCTAGACAGAATGGCTTGAAGGTTTCCAAGGGTAATTGTGTTCTGTCAATAAGTTAGAAATATTTGTGAATAACCTTTCCTCGCTACCAAACTTAACAACTTTCGTATACCATTAGGGTACTACTACTTATGTGATGCGGGTTACCCCAACGCCGAGGGATTCCTAGCTCCTTATAAAGGGCAGAGGTACCACCTGCAGGAGTGGCGTGGCGTAGGGAATGCTCCAACAACAACAAAAGAATTCTTTAACATGAAGCATTCTTCTGCAAGAAACGTCATTGAGAGAGCATTCGGTCTACTTAAAGGTCGATGGACAATTCTTCGTGGGAAGTCGTACTATCCCGTGGAAGTACAATGTTGCACAATACTGGCATGTTGTCTACTGCACAACTTGATTAATAGGGAGATGACGAGTTTCGAAGTAATAGAGGACGTCGACGAAGTGAACTCAACATACGCAACGATAGGAGGTGACGACATTCAGTACGTTGAGAGCTCGGACGAATGGAGTAAGTGGAGGGACGATAAAACGGAGGAGATGTACAATGAATGGCAAATGCGGAATCAGTAGTTACCCTTCTATGCCAATGGATTTTACTTATGCATAGCTTTACTATGTACTTGCTAATGTTTTTTTAAATTGTCATCGTTATGTATCAAATTGTCCTCGATATGTATTAGATGCAACTAGTTGAAATTGTCATAATTCATTGTCCTCGATATGTATTAGATGTTTTTTTTAAATTTTCTGTTTACCGTTCGTTTAATATCTGTCTTTTGTTTCGTGTTTGGTAGAATGACAAGTTCGTCGAGGGCCCCCAAGCATACGTGGACCAGAGAAGAAGAGTCAATCCTCGTGGAATGTCTGGTGGAGTTGGTATCCATGGGGGGTGGAAATCGGACAACGGCACATTCCGACCCGGTTACCTGGCAATGATTATGCCAATGATGTCTGAAAAGCTCCCAGGTTGTAGCATACAGGGGACTACGACTATTAACTGTCGGATCAAGACACTAAAGCGCACCTTTCAAGCCATATCGGAGATGCGGGGCCCTACCTGCAGTGGATTCGGCTGGAATGACGAGGTGAAATGCATAATTGCTGAGAATGACCTATTTGACAATTGGGTGAAGGTACGTATTTTCATGGTTATCCAGTATTGGCGTAATGAAATTATTTTATGTTCCCATAATTAATGAATCTAATAAAGTGGTTGTATTTTTCTTTTGCACAGAGTCACCCAGCAGAAAAAGATCTGCTGAACAAGCCGTTTCCATACTATGACGAACTGTCATATGTCTTCGGGAAAGACCGCGCTACCGAACAACGCGCAGAGACGTTCGCAGATGTCGGTTTCAATGTGCCGGTAGTTCTGGGGAGTTTGTTGGTGACGGTGTTTCGAATATGGACATCCTATGCATGTATAGCTAGGGACATCCCATATCACCAGATGACGTAG

mRNA sequence

ATGGACAAGCGAACGTTTGCCATTATGTGCCATTTGCTTAGGACAGTCGCTGGATTAGCCTCGACCGAAGTCGTAGACGTTGAGGAGATGGTGGCGATGTTCCTTCACGTCCTAGCGTACGATGTGAAGAACCGAGTGGTCCAGCGGGAGTTTATGTGGTCCGGTGATAAAATTTCAAGGCATTTCAACATGGTGTTGATGGCCGTTGTACGTCTTCATGACGAGCTGATAAAAAAACCGCAACCAGTAATAAACAACTGCATAGATCCCCGCTGGCGTTGTTTCGAGAATGACAAGTTCGTCGAGGGCCCCCAAGCATACGTGGACCAGAGAAGAAGAGTCAATCCTCGTGGAATGTCTGGTGGAGTTGGTATCCATGGGGGGTGGAAATCGGACAACGGCACATTCCGACCCGGTTACCTGGCAATGATTATGCCAATGATGTCTGAAAAGCTCCCAGGTTGTAGCATACAGGGGACTACGACTATTAACTGTCGGATCAAGACACTAAAGCGCACCTTTCAAGCCATATCGGAGATGCGGGGCCCTACCTGCAGTGGATTCGGCTGGAATGACGAGGTGAAATGCATAATTGCTGAGAATGACCTATTTGACAATTGGGTGAAGAGTCACCCAGCAGAAAAAGATCTGCTGAACAAGCCGTTTCCATACTATGACGAACTGTCATATGTCTTCGGGAAAGACCGCGCTACCGAACAACGCGCAGAGACGTTCGCAGATGTCGGTTTCAATGTGCCGGTAGTTCTGGGGAGTTTGTTGGTGACGGTGTTTCGAATATGGACATCCTATGCATGTATAGCTAGGGACATCCCATATCACCAGATGACGTAG

Coding sequence (CDS)

ATGGACAAGCGAACGTTTGCCATTATGTGCCATTTGCTTAGGACAGTCGCTGGATTAGCCTCGACCGAAGTCGTAGACGTTGAGGAGATGGTGGCGATGTTCCTTCACGTCCTAGCGTACGATGTGAAGAACCGAGTGGTCCAGCGGGAGTTTATGTGGTCCGGTGATAAAATTTCAAGGCATTTCAACATGGTGTTGATGGCCGTTGTACGTCTTCATGACGAGCTGATAAAAAAACCGCAACCAGTAATAAACAACTGCATAGATCCCCGCTGGCGTTGTTTCGAGAATGACAAGTTCGTCGAGGGCCCCCAAGCATACGTGGACCAGAGAAGAAGAGTCAATCCTCGTGGAATGTCTGGTGGAGTTGGTATCCATGGGGGGTGGAAATCGGACAACGGCACATTCCGACCCGGTTACCTGGCAATGATTATGCCAATGATGTCTGAAAAGCTCCCAGGTTGTAGCATACAGGGGACTACGACTATTAACTGTCGGATCAAGACACTAAAGCGCACCTTTCAAGCCATATCGGAGATGCGGGGCCCTACCTGCAGTGGATTCGGCTGGAATGACGAGGTGAAATGCATAATTGCTGAGAATGACCTATTTGACAATTGGGTGAAGAGTCACCCAGCAGAAAAAGATCTGCTGAACAAGCCGTTTCCATACTATGACGAACTGTCATATGTCTTCGGGAAAGACCGCGCTACCGAACAACGCGCAGAGACGTTCGCAGATGTCGGTTTCAATGTGCCGGTAGTTCTGGGGAGTTTGTTGGTGACGGTGTTTCGAATATGGACATCCTATGCATGTATAGCTAGGGACATCCCATATCACCAGATGACGTAG

Protein sequence

MDKRTFAIMCHLLRTVAGLASTEVVDVEEMVAMFLHVLAYDVKNRVVQREFMWSGDKISRHFNMVLMAVVRLHDELIKKPQPVINNCIDPRWRCFENDKFVEGPQAYVDQRRRVNPRGMSGGVGIHGGWKSDNGTFRPGYLAMIMPMMSEKLPGCSIQGTTTINCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAENDLFDNWVKSHPAEKDLLNKPFPYYDELSYVFGKDRATEQRAETFADVGFNVPVVLGSLLVTVFRIWTSYACIARDIPYHQMT

Homology

[Close]

BLAST of PI0026960 vs. ExPASy TrEMBL
Match: A0A5D3BZA2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00580 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 3.8e-77
Identity = 155/330 (46.97%), Postives = 198/330 (60.00%), Query Frame = 0


Query: 1   MDKRTFAIMCHLLRTVAGLASTEVVDVEEMVAMFLHVLAYDVKNRVVQREFMWSGDKISR 60
           MD++TF I+ HLLR V+GL+STE+VDVEEMVA FLHVLA+DVKNR++QREF+ S + +SR
Sbjct: 40  MDRQTFTILFHLLRIVSGLSSTEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSR 99

Query: 61  HFNMVLMAVVRLHDELIKKPQPVINNCIDPRWRCFEN----------------------- 120
           +FN++L+AVVR+++E I++     NNC D RW+CFEN                       
Sbjct: 100 YFNLILLAVVRIYEEFIERLISRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFT 159

Query: 121 -----------------DKFV------EG------------------------------- 180
                              FV      EG                               
Sbjct: 160 TCKGEIATNVLDVCDTKGDFVYVLAGWEGSVVDSQILRDALARENGLRVPNGSLGHSSWK 219

Query: 181 ------------PQAYVDQRRRVNPRGMSGGVGIHGGWKSDNGTFRPGYLAMIMPMMSEK 240
                       P+A +D+    +  G+  GVG++GGWKSDNGTFRPGYLA ++ MM+EK
Sbjct: 220 VVLSFYVNLNPCPEACLDEGGGRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEK 279

Query: 241 LPGCSIQGTTTINCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAENDLFDNWVKSH 242
           LPGC ++ TT I+CRIK LK+TFQ I+EMRGP CSGFGWNDE KCIIAE +LFDNW++SH
Sbjct: 280 LPGCRVRTTTVIDCRIKILKQTFQVIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRSH 339

[Close]

BLAST of PI0026960 vs. ExPASy TrEMBL
Match: E5GBB2 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 8.8e-74
Identity = 182/460 (39.57%), Postives = 215/460 (46.74%), Query Frame = 0


Query: 1   MDKRTFAIMCHLLRTVAGLASTEVVDVEEMVAMFLHVLAYDVKNRVVQREFMWSGDKISR 60
           MD+RTFAI+CHLLR VAGL+STE+VDVEEMVAMFLHVLA+DVKNRV+Q+EF+ SG+ +SR
Sbjct: 15  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQQEFVRSGETVSR 74

Query: 61  HFNMVLMAVVRLHDELIKKPQPVINNCIDPRWRCFEN----------------------- 120
           HFN+VL+AV+RL++ELIK+P PV +NC D RW+CFEN                       
Sbjct: 75  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFR 134

Query: 121 -----------------DKFV------EGPQA---------------------------- 180
                              FV      EG  A                            
Sbjct: 135 TRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYYLCDAG 194

Query: 181 ----------YVDQR---------------------------RRVNPR------------ 240
                     Y  QR                           R V  R            
Sbjct: 195 YPNAEGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWTIL 254

Query: 241 ------------------------------------------------------------ 254
                                                                       
Sbjct: 255 RGKSYYPLQVQCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYATTTASEDIQYIETT 314

[Close]

BLAST of PI0026960 vs. ExPASy TrEMBL
Match: A0A5A7V4E7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005480 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 3.7e-72
Identity = 142/286 (49.65%), Postives = 179/286 (62.59%), Query Frame = 0


Query: 28  EEMVAMFLHVLAYDVKNRVVQREFMWSGDKISRHFNMVLMAVVRLHDELIKKPQPVINNC 87
           EEMVAMFLHVLA+DVKNRV+QREF+ S + +SRHFN++L+AVVR+++E IK+   + NNC
Sbjct: 3   EEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRHFNLILLAVVRIYEEFIKRLISITNNC 62

Query: 88  IDPRWRCFEN----------------------------------------DKFV------ 147
            D RW+CFEN                                          FV      
Sbjct: 63  NDQRWKCFENCFGALDETYIKVNVPAVDRPTFRTCKGKIATNVLDVCDTKGDFVYVLAGW 122

Query: 148 EG---------PQAYVDQRRRVNPRGMSGGVGIHGGWKSDNGTFRPGYLAMIMPMMSEKL 207
           EG         P+  +D+    +  G+  GVG++GGWK DNGTFRPGYLA ++ MM+EKL
Sbjct: 123 EGSVYVNLNPCPETCLDEGGGGHSCGVLNGVGVNGGWKFDNGTFRPGYLAQLVRMMAEKL 182

Query: 208 PGCSIQGTTTINCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAENDLFDNWVKSHP 259
           PGC ++ TT I+CRIK LKRTFQAI+EMRGP CSGFGWNDE KCIIAE +LFDNW++ HP
Sbjct: 183 PGCRVRTTTVIDCRIKILKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRLHP 242

[Close]

BLAST of PI0026960 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 7.7e-70
Identity = 174/433 (40.18%), Postives = 205/433 (47.34%), Query Frame = 0


Query: 1   MDKRTFAIMCHLLRTVAGLASTEVVDVEEMVAMFLHVLAYDVKNRVVQREFMWSGDKISR 60
           MD+R FAI+CHLLRT+AGL STEVVDVEEMVAMFLH+LA+DVKNRV+QREFM SG+ ISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMVLMAVVRLHDELIKKPQPVINNCIDPRWRCFEN-----------------DKF--- 120
           HFNMVL+AV+RLHDEL+KKPQPV N C D RWR FEN                 D+    
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 ---------------VEGPQAYV---------------DQRRRVN----PRG-------- 180
                           +G   YV               D   R N    P+G        
Sbjct: 187 TRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 ----------------------------------------------------------MS 240
                                                                     + 
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 GGVGIH------------------------------------------------------ 254
            G   H                                                      
Sbjct: 307 RGKSYHPVEVQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEAGL 366

[Close]

BLAST of PI0026960 vs. ExPASy TrEMBL
Match: A0A5D3C620 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003010 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 4.2e-68
Identity = 143/263 (54.37%), Postives = 177/263 (67.30%), Query Frame = 0


Query: 1   MDKRTFAIMCHLLRTVAGLASTEVVDVEEMVAMFLHVLAYDVKNRVVQREFMWSGDKISR 60
           MD+RTFAI+CHLL+TV+GL+STE+VDVEEMVAMFLHVLA+D+KN V+QREF+ S + +SR
Sbjct: 40  MDRRTFAILCHLLQTVSGLSSTEIVDVEEMVAMFLHVLAHDMKNSVIQREFVRSDETVSR 99

Query: 61  HFNMVLMAVVRLHDELIKKPQPVINNCIDPRWRCFEND-KFVEGPQAYVDQRRRVNPRGM 120
           HFN+VL+ VVRL++ELIK+P PV NNC D RW+CFEN    ++G   Y+    +VN    
Sbjct: 100 HFNLVLLTVVRLYEELIKRPVPVTNNCKDQRWQCFENCLGALDG--TYI----KVNVPA- 159

Query: 121 SGGVGIHGGWKSDNGTF--RPGYLAMIMPMMSEKLPGCSIQGTTTINC------RIKTLK 180
                      +D  TF  R G +A     +      C  +G    +C       +    
Sbjct: 160 -----------TDRPTFRTRKGEIATNYVNLKPYPETCLDEGGGGHSCGVFNEVGVNGGG 219

Query: 181 RTFQAISEMRGPTCSGFGWNDEVKCIIAENDLFDNWVKSHPAEKDLLNKPFPYYDELSYV 240
               AI+EM GP CSGFGWNDE KCII E +LFDNWV+SHPA K LLNKPFPYYDEL+YV
Sbjct: 220 NWIMAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYV 279

Query: 241 FGKDRATEQRAETFADVGFNVPV 255
           FG+DRAT Q  ETF +VG N PV
Sbjct: 280 FGRDRATGQFVETFVNVGSNEPV 284

[Close]

BLAST of PI0026960 vs. NCBI nr
Match: TYK04867.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 7.9e-77
Identity = 155/330 (46.97%), Postives = 198/330 (60.00%), Query Frame = 0


Query: 1   MDKRTFAIMCHLLRTVAGLASTEVVDVEEMVAMFLHVLAYDVKNRVVQREFMWSGDKISR 60
           MD++TF I+ HLLR V+GL+STE+VDVEEMVA FLHVLA+DVKNR++QREF+ S + +SR
Sbjct: 40  MDRQTFTILFHLLRIVSGLSSTEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSR 99

Query: 61  HFNMVLMAVVRLHDELIKKPQPVINNCIDPRWRCFEN----------------------- 120
           +FN++L+AVVR+++E I++     NNC D RW+CFEN                       
Sbjct: 100 YFNLILLAVVRIYEEFIERLISRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFT 159

Query: 121 -----------------DKFV------EG------------------------------- 180
                              FV      EG                               
Sbjct: 160 TCKGEIATNVLDVCDTKGDFVYVLAGWEGSVVDSQILRDALARENGLRVPNGSLGHSSWK 219

Query: 181 ------------PQAYVDQRRRVNPRGMSGGVGIHGGWKSDNGTFRPGYLAMIMPMMSEK 240
                       P+A +D+    +  G+  GVG++GGWKSDNGTFRPGYLA ++ MM+EK
Sbjct: 220 VVLSFYVNLNPCPEACLDEGGGRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEK 279

Query: 241 LPGCSIQGTTTINCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAENDLFDNWVKSH 242
           LPGC ++ TT I+CRIK LK+TFQ I+EMRGP CSGFGWNDE KCIIAE +LFDNW++SH
Sbjct: 280 LPGCRVRTTTVIDCRIKILKQTFQVIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRSH 339

[Close]

BLAST of PI0026960 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 287.0 bits (733), Expect = 1.8e-73
Identity = 182/460 (39.57%), Postives = 215/460 (46.74%), Query Frame = 0


Query: 1   MDKRTFAIMCHLLRTVAGLASTEVVDVEEMVAMFLHVLAYDVKNRVVQREFMWSGDKISR 60
           MD+RTFAI+CHLLR VAGL+STE+VDVEEMVAMFLHVLA+DVKNRV+Q+EF+ SG+ +SR
Sbjct: 15  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQQEFVRSGETVSR 74

Query: 61  HFNMVLMAVVRLHDELIKKPQPVINNCIDPRWRCFEN----------------------- 120
           HFN+VL+AV+RL++ELIK+P PV +NC D RW+CFEN                       
Sbjct: 75  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFR 134

Query: 121 -----------------DKFV------EGPQA---------------------------- 180
                              FV      EG  A                            
Sbjct: 135 TRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYYLCDAG 194

Query: 181 ----------YVDQR---------------------------RRVNPR------------ 240
                     Y  QR                           R V  R            
Sbjct: 195 YPNAEGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWTIL 254

Query: 241 ------------------------------------------------------------ 254
                                                                       
Sbjct: 255 RGKSYYPLQVQCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYATTTASEDIQYIETT 314

[Close]

BLAST of PI0026960 vs. NCBI nr
Match: KAA0062170.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 281.6 bits (719), Expect = 7.6e-72
Identity = 142/286 (49.65%), Postives = 179/286 (62.59%), Query Frame = 0


Query: 28  EEMVAMFLHVLAYDVKNRVVQREFMWSGDKISRHFNMVLMAVVRLHDELIKKPQPVINNC 87
           EEMVAMFLHVLA+DVKNRV+QREF+ S + +SRHFN++L+AVVR+++E IK+   + NNC
Sbjct: 3   EEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRHFNLILLAVVRIYEEFIKRLISITNNC 62

Query: 88  IDPRWRCFEN----------------------------------------DKFV------ 147
            D RW+CFEN                                          FV      
Sbjct: 63  NDQRWKCFENCFGALDETYIKVNVPAVDRPTFRTCKGKIATNVLDVCDTKGDFVYVLAGW 122

Query: 148 EG---------PQAYVDQRRRVNPRGMSGGVGIHGGWKSDNGTFRPGYLAMIMPMMSEKL 207
           EG         P+  +D+    +  G+  GVG++GGWK DNGTFRPGYLA ++ MM+EKL
Sbjct: 123 EGSVYVNLNPCPETCLDEGGGGHSCGVLNGVGVNGGWKFDNGTFRPGYLAQLVRMMAEKL 182

Query: 208 PGCSIQGTTTINCRIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAENDLFDNWVKSHP 259
           PGC ++ TT I+CRIK LKRTFQAI+EMRGP CSGFGWNDE KCIIAE +LFDNW++ HP
Sbjct: 183 PGCRVRTTTVIDCRIKILKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRLHP 242

[Close]

BLAST of PI0026960 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-69
Identity = 174/433 (40.18%), Postives = 205/433 (47.34%), Query Frame = 0


Query: 1   MDKRTFAIMCHLLRTVAGLASTEVVDVEEMVAMFLHVLAYDVKNRVVQREFMWSGDKISR 60
           MD+R FAI+CHLLRT+AGL STEVVDVEEMVAMFLH+LA+DVKNRV+QREFM SG+ ISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMVLMAVVRLHDELIKKPQPVINNCIDPRWRCFEN-----------------DKF--- 120
           HFNMVL+AV+RLHDEL+KKPQPV N C D RWR FEN                 D+    
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 ---------------VEGPQAYV---------------DQRRRVN----PRG-------- 180
                           +G   YV               D   R N    P+G        
Sbjct: 187 TRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 ----------------------------------------------------------MS 240
                                                                     + 
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 GGVGIH------------------------------------------------------ 254
            G   H                                                      
Sbjct: 307 RGKSYHPVEVQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEAGL 366

[Close]

BLAST of PI0026960 vs. NCBI nr
Match: TYK05796.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 8.7e-68
Identity = 143/263 (54.37%), Postives = 177/263 (67.30%), Query Frame = 0


Query: 1   MDKRTFAIMCHLLRTVAGLASTEVVDVEEMVAMFLHVLAYDVKNRVVQREFMWSGDKISR 60
           MD+RTFAI+CHLL+TV+GL+STE+VDVEEMVAMFLHVLA+D+KN V+QREF+ S + +SR
Sbjct: 40  MDRRTFAILCHLLQTVSGLSSTEIVDVEEMVAMFLHVLAHDMKNSVIQREFVRSDETVSR 99

Query: 61  HFNMVLMAVVRLHDELIKKPQPVINNCIDPRWRCFEND-KFVEGPQAYVDQRRRVNPRGM 120
           HFN+VL+ VVRL++ELIK+P PV NNC D RW+CFEN    ++G   Y+    +VN    
Sbjct: 100 HFNLVLLTVVRLYEELIKRPVPVTNNCKDQRWQCFENCLGALDG--TYI----KVNVPA- 159

Query: 121 SGGVGIHGGWKSDNGTF--RPGYLAMIMPMMSEKLPGCSIQGTTTINC------RIKTLK 180
                      +D  TF  R G +A     +      C  +G    +C       +    
Sbjct: 160 -----------TDRPTFRTRKGEIATNYVNLKPYPETCLDEGGGGHSCGVFNEVGVNGGG 219

Query: 181 RTFQAISEMRGPTCSGFGWNDEVKCIIAENDLFDNWVKSHPAEKDLLNKPFPYYDELSYV 240
               AI+EM GP CSGFGWNDE KCII E +LFDNWV+SHPA K LLNKPFPYYDEL+YV
Sbjct: 220 NWIMAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYV 279

Query: 241 FGKDRATEQRAETFADVGFNVPV 255
           FG+DRAT Q  ETF +VG N PV
Sbjct: 280 FGRDRATGQFVETFVNVGSNEPV 284

[Close]

BLAST of PI0026960 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-10
Identity = 36/125 (28.80%), Postives = 64/125 (51.20%), Query Frame = 0


Query: 124 GIHGGWKSDNGTF-RPGYLAMIMPMMSEKLPGCSIQGTTTINCRIKTLKRTFQAISEMRG 183
           GI+  W+  NGT  +       MP ++++   C  +       R+K LK  +Q+  +++ 
Sbjct: 32  GINNNWRDSNGTISKLTVETKFMPEINKEF--CRSKNYNHYLSRMKYLKIQYQSCLDLQ- 91

Query: 184 PTCSGFGWNDEVKCIIAENDLFDNWVKSHPAEKDLLNKPFPYYDELSYVFGKDRATEQRA 243
              SGFGW+   K   A ++++ +++K+HP  K L    F ++DEL  +FG+  AT + A
Sbjct: 92  RFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNA 151

Query: 244 ETFAD 248
               D
Sbjct: 152 IGLCD 153

[Close]

BLAST of PI0026960 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-10
Identity = 32/97 (32.99%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 1   MDKRTFAIMCHLLRTVAGLASTEVVDVEEMVAMFLHVLAYDVKNRVVQREFMWSGDKISR 60
           MDK  F  +C LL+T   L  T  + +E  +A+FL ++ ++++ R VQ  F +SG+ ISR
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNMVLMAVVRL---------HDELIKKPQPVINNCI 89
           HFN VL AV+ +         + + ++   P   +C+
Sbjct: 108 HFNNVLNAVIAISKDFFQPNSNSDTLENDDPYFKDCV 144

[Close]

BLAST of PI0026960 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-08
Identity = 33/126 (26.19%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 125 IHGGWKSDNGTFRPGYLAM---IMPMMSEKLPGCSIQGTTTINCRIKTLKRTFQAISEMR 184
           I   W+  +G    G L +   ++P ++++L GC+ +       R+K LK  +Q+  +++
Sbjct: 29  IRQNWRDSSGII--GKLTVESKLLPALNKRL-GCN-KNHKNYMSRLKFLKNLYQSYLDLK 88

Query: 185 GPTCSGFGWNDEVKCIIAENDLFDNWVKSHPAEKDLLNKPFPYYDELSYVFGKDRATEQR 244
               SGFGW+ E K   A ++++ +++K+HP  K +  +   ++++L  +FG   AT   
Sbjct: 89  -RFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHFEDLQIIFGDVVATGSF 148

Query: 245 AETFAD 248
           A   +D
Sbjct: 149 AVGMSD 149

[Close]

BLAST of PI0026960 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 5.4e-07
Identity = 21/68 (30.88%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 166 RIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAENDLFDNWVKSHPAEKDLLNKPFPYY 225
           R K+L+R F AI  +      GF W++E + + A+N+++ +++K+H   +  + +P PYY
Sbjct: 240 RYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYY 299

Query: 226 DELSYVFG 234
            +L  + G
Sbjct: 300 KDLCVLCG 305

[Close]

BLAST of PI0026960 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 52.8 bits (125), Expect = 5.4e-07
Identity = 21/68 (30.88%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 166 RIKTLKRTFQAISEMRGPTCSGFGWNDEVKCIIAENDLFDNWVKSHPAEKDLLNKPFPYY 225
           R K+L+R F AI  +      GF W++E + + A+N+++ +++K+H   +  + +P PYY
Sbjct: 240 RYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYY 299

Query: 226 DELSYVFG 234
            +L  + G
Sbjct: 300 KDLCVLCG 305

The following BLAST results are available for this feature:

BLAST of PI0026960 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZA2	3.8e-77	46.97	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GBB2	8.8e-74	39.57	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7V4E7	3.7e-72	49.65	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SWD8	7.7e-70	40.18	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C620	4.2e-68	54.37	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0026960 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04867.1	7.9e-77	46.97	retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN33754.1	1.8e-73	39.57	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0062170.1	7.6e-72	49.65	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0034843.1	1.6e-69	40.18	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05796.1	8.7e-68	54.37	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0026960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	2.3e-10	28.80	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41980.1	4.0e-10	32.99	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G30140.1	3.7e-08	26.19	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	5.4e-07	30.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	5.4e-07	30.88	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 127..248
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 127..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026960.1	PI0026960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane