Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACCACTCTATATCACTCGACTGGGAGCTGTTGTGGGTCATCTGGTACATATTTAAATATTGTCTAATTATTTTTAGTATAAATTTATTTTTTAATAGTTTCTAATTCATTTTAATATTTCACAGAGATCAAACAATAGTAGACTTCGAGATGTTGCAAATGTTCCACAGCAGGTCCTAGATATATGCAACAATAACGAGCGGTACATAGAGAACATACAATATATGTACGATGTACCTATTGTACCTACACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAGTTGAACAGCACGTGGAAGAAGTGCCTCCTGTGAGACAAACACAAAGCGAGACTAGTGACGCTAGTCCAATGATGATGATGTCGACATTTGGAACGGGATATAATGATTCAGAAGTCGGTCAATCGTCACACTTCGGAACAGGATATTATAATTCAGAGGCAGGTCCATCATCATCAAACTTTGGACAAGGATACTACAATTTAGGAACCGATCCATCATCTTCATACATGCATGGACATGGGCGTGATCATGAAGAACATAACGAATATTTGTACTATGAAGCGCCTGCAGTGGTACTCGAGTGA
mRNA sequence
ATGTTACCACTCTATATCACTCGACTGGGAGCTGTTGTGGGTCATCTGAGATCAAACAATAGTAGACTTCGAGATGTTGCAAATGTTCCACAGCAGGTCCTAGATATATGCAACAATAACGAGCGGTACATAGAGAACATACAATATATGTACGATGTACCTATTGTACCTACACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAGTTGAACAGCACGTGGAAGAAGTGCCTCCTGTGAGACAAACACAAAGCGAGACTAGTGACGCTAGTCCAATGATGATGATGTCGACATTTGGAACGGGATATAATGATTCAGAAGTCGGTCAATCGTCACACTTCGGAACAGGATATTATAATTCAGAGGCAGGTCCATCATCATCAAACTTTGGACAAGGATACTACAATTTAGGAACCGATCCATCATCTTCATACATGCATGGACATGGGCGTGATCATGAAGAACATAACGAATATTTGTACTATGAAGCGCCTGCAGTGGTACTCGAGTGA
Coding sequence (CDS)
ATGTTACCACTCTATATCACTCGACTGGGAGCTGTTGTGGGTCATCTGAGATCAAACAATAGTAGACTTCGAGATGTTGCAAATGTTCCACAGCAGGTCCTAGATATATGCAACAATAACGAGCGGTACATAGAGAACATACAATATATGTACGATGTACCTATTGTACCTACACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAGTTGAACAGCACGTGGAAGAAGTGCCTCCTGTGAGACAAACACAAAGCGAGACTAGTGACGCTAGTCCAATGATGATGATGTCGACATTTGGAACGGGATATAATGATTCAGAAGTCGGTCAATCGTCACACTTCGGAACAGGATATTATAATTCAGAGGCAGGTCCATCATCATCAAACTTTGGACAAGGATACTACAATTTAGGAACCGATCCATCATCTTCATACATGCATGGACATGGGCGTGATCATGAAGAACATAACGAATATTTGTACTATGAAGCGCCTGCAGTGGTACTCGAGTGA
Protein sequence
MLPLYITRLGAVVGHLRSNNSRLRDVANVPQQVLDICNNNERYIENIQYMYDVPIVPTPVQRRRARVQEPDELEEVEQHVEEVPPVRQTQSETSDASPMMMMSTFGTGYNDSEVGQSSHFGTGYYNSEAGPSSSNFGQGYYNLGTDPSSSYMHGHGRDHEEHNEYLYYEAPAVVLE
Homology
BLAST of PI0026958 vs. ExPASy TrEMBL
Match:
A0A5A7U558 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00220 PE=4 SV=1)
HSP 1 Score: 253.1 bits (645), Expect = 8.8e-64
Identity = 131/173 (75.72%), Postives = 147/173 (84.97%), Query Frame = 0
Query: 4 LYITRLGAVVGHLRSNNSRLRDVANVPQQVLDICNNNERYIENIQYMYDVPIVPTPVQRR 63
LYIT+ GAVVGHLRSNNSRLR+VAN PQQ+L+ICN+NE+Y+ENI YMYDVPI PVQRR
Sbjct: 101 LYITQPGAVVGHLRSNNSRLRNVANNPQQILNICNDNEQYMENIHYMYDVPITLAPVQRR 160
Query: 64 RARVQEPDELEEVEQHVEEVPPVRQTQSETSDASPMMMMSTFGTGYNDSEVGQSSHFGTG 123
A VQ+PD+LEEV+QHVEE+P + QTQSE S SP+MMMS FGT Y D VGQSS FGTG
Sbjct: 161 CALVQKPDQLEEVDQHVEEMPLMTQTQSEHSYVSPVMMMSAFGTTYYDLGVGQSSDFGTG 220
Query: 124 YYNSEAGPSSSNFGQGYYNLGTDPSSSYMHGHGRDHEEHNEYLYYEAPAVVLE 177
YYNSEA PSSSNFGQ YY+LG+DPSSSYMHGHGR H EHNEYLYY+ PA V E
Sbjct: 221 YYNSEASPSSSNFGQQYYDLGSDPSSSYMHGHGRGHGEHNEYLYYKVPAAVPE 273
BLAST of PI0026958 vs. ExPASy TrEMBL
Match:
A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)
HSP 1 Score: 252.3 bits (643), Expect = 1.5e-63
Identity = 130/173 (75.14%), Postives = 147/173 (84.97%), Query Frame = 0
Query: 4 LYITRLGAVVGHLRSNNSRLRDVANVPQQVLDICNNNERYIENIQYMYDVPIVPTPVQRR 63
LYIT+ GAV+ HLRSNN RLR+VA+ PQQVL+ICN+NE+Y+ENI YMYDVPIVP PVQRR
Sbjct: 402 LYITQPGAVMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRR 461
Query: 64 RARVQEPDELEEVEQHVEEVPPVRQTQSETSDASPMMMMSTFGTGYNDSEVGQSSHFGTG 123
R VQEPD+LEEV+QH EEVPP+ QTQSE + SP+MMM TFGT Y DSEVGQSS FG G
Sbjct: 462 RPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRG 521
Query: 124 YYNSEAGPSSSNFGQGYYNLGTDPSSSYMHGHGRDHEEHNEYLYYEAPAVVLE 177
YYNSEAG SS++FGQ YY+LG+DPSSSYMHGHGR EHNEYLYYE PA V E
Sbjct: 522 YYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPE 574
BLAST of PI0026958 vs. ExPASy TrEMBL
Match:
A0A5A7UKC7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G001140 PE=4 SV=1)
HSP 1 Score: 245.4 bits (625), Expect = 1.8e-61
Identity = 127/173 (73.41%), Postives = 144/173 (83.24%), Query Frame = 0
Query: 4 LYITRLGAVVGHLRSNNSRLRDVANVPQQVLDICNNNERYIENIQYMYDVPIVPTPVQRR 63
LYIT+ GA + HLRSNN RL +VA+ PQQVL+ICNNNE+Y+ENI YMYDVPIVP PVQRR
Sbjct: 559 LYITQPGAAMSHLRSNNIRLWNVADDPQQVLNICNNNEQYMENIHYMYDVPIVPAPVQRR 618
Query: 64 RARVQEPDELEEVEQHVEEVPPVRQTQSETSDASPMMMMSTFGTGYNDSEVGQSSHFGTG 123
R VQEPD+LEEV+QH EEVPP+ QT+SE + SP+MMM TFGT Y DS VGQSS FG G
Sbjct: 619 RPLVQEPDQLEEVDQHGEEVPPMTQTKSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRG 678
Query: 124 YYNSEAGPSSSNFGQGYYNLGTDPSSSYMHGHGRDHEEHNEYLYYEAPAVVLE 177
YYNSEAG SS++FGQ YY+LG+DPSSSYMHGHGR EHNEYLYYE PA V E
Sbjct: 679 YYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPE 731
BLAST of PI0026958 vs. ExPASy TrEMBL
Match:
A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)
HSP 1 Score: 243.4 bits (620), Expect = 6.9e-61
Identity = 125/173 (72.25%), Postives = 145/173 (83.82%), Query Frame = 0
Query: 4 LYITRLGAVVGHLRSNNSRLRDVANVPQQVLDICNNNERYIENIQYMYDVPIVPTPVQRR 63
LYIT+ GA + HLRSNN RLR+VA+ PQQVL+ICN+NE+Y+ENI YMYDVPIVP PVQRR
Sbjct: 1050 LYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRR 1109
Query: 64 RARVQEPDELEEVEQHVEEVPPVRQTQSETSDASPMMMMSTFGTGYNDSEVGQSSHFGTG 123
R VQEPD+LEEV+QH +EVPP+ QTQSE + SP+MMM TFGT Y DS VGQSS FG G
Sbjct: 1110 RPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRG 1169
Query: 124 YYNSEAGPSSSNFGQGYYNLGTDPSSSYMHGHGRDHEEHNEYLYYEAPAVVLE 177
YYNS+AG SS++FGQ YY+LG+DPSSSYMHGHGR +HNEYLYYE PA V E
Sbjct: 1170 YYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPE 1222
BLAST of PI0026958 vs. ExPASy TrEMBL
Match:
A0A5A7T598 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00500 PE=4 SV=1)
HSP 1 Score: 243.4 bits (620), Expect = 6.9e-61
Identity = 125/173 (72.25%), Postives = 145/173 (83.82%), Query Frame = 0
Query: 4 LYITRLGAVVGHLRSNNSRLRDVANVPQQVLDICNNNERYIENIQYMYDVPIVPTPVQRR 63
LYIT+ GA + HLRSNN RLR+VA+ PQQVL+ICN+NE+Y+ENI YMYDVPIVP PVQRR
Sbjct: 289 LYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRR 348
Query: 64 RARVQEPDELEEVEQHVEEVPPVRQTQSETSDASPMMMMSTFGTGYNDSEVGQSSHFGTG 123
R VQEPD+LEEV+QH +EVPP+ QTQSE + SP+MMM TFGT Y DS VGQSS FG G
Sbjct: 349 RPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRG 408
Query: 124 YYNSEAGPSSSNFGQGYYNLGTDPSSSYMHGHGRDHEEHNEYLYYEAPAVVLE 177
YYNS+AG SS++FGQ YY+LG+DPSSSYMHGHGR +HNEYLYYE PA V E
Sbjct: 409 YYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPE 461
BLAST of PI0026958 vs. NCBI nr
Match:
KAA0050408.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYJ97999.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 253.1 bits (645), Expect = 1.8e-63
Identity = 131/173 (75.72%), Postives = 147/173 (84.97%), Query Frame = 0
Query: 4 LYITRLGAVVGHLRSNNSRLRDVANVPQQVLDICNNNERYIENIQYMYDVPIVPTPVQRR 63
LYIT+ GAVVGHLRSNNSRLR+VAN PQQ+L+ICN+NE+Y+ENI YMYDVPI PVQRR
Sbjct: 101 LYITQPGAVVGHLRSNNSRLRNVANNPQQILNICNDNEQYMENIHYMYDVPITLAPVQRR 160
Query: 64 RARVQEPDELEEVEQHVEEVPPVRQTQSETSDASPMMMMSTFGTGYNDSEVGQSSHFGTG 123
A VQ+PD+LEEV+QHVEE+P + QTQSE S SP+MMMS FGT Y D VGQSS FGTG
Sbjct: 161 CALVQKPDQLEEVDQHVEEMPLMTQTQSEHSYVSPVMMMSAFGTTYYDLGVGQSSDFGTG 220
Query: 124 YYNSEAGPSSSNFGQGYYNLGTDPSSSYMHGHGRDHEEHNEYLYYEAPAVVLE 177
YYNSEA PSSSNFGQ YY+LG+DPSSSYMHGHGR H EHNEYLYY+ PA V E
Sbjct: 221 YYNSEASPSSSNFGQQYYDLGSDPSSSYMHGHGRGHGEHNEYLYYKVPAAVPE 273
BLAST of PI0026958 vs. NCBI nr
Match:
KAA0067080.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 252.3 bits (643), Expect = 3.1e-63
Identity = 130/173 (75.14%), Postives = 147/173 (84.97%), Query Frame = 0
Query: 4 LYITRLGAVVGHLRSNNSRLRDVANVPQQVLDICNNNERYIENIQYMYDVPIVPTPVQRR 63
LYIT+ GAV+ HLRSNN RLR+VA+ PQQVL+ICN+NE+Y+ENI YMYDVPIVP PVQRR
Sbjct: 402 LYITQPGAVMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRR 461
Query: 64 RARVQEPDELEEVEQHVEEVPPVRQTQSETSDASPMMMMSTFGTGYNDSEVGQSSHFGTG 123
R VQEPD+LEEV+QH EEVPP+ QTQSE + SP+MMM TFGT Y DSEVGQSS FG G
Sbjct: 462 RPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRG 521
Query: 124 YYNSEAGPSSSNFGQGYYNLGTDPSSSYMHGHGRDHEEHNEYLYYEAPAVVLE 177
YYNSEAG SS++FGQ YY+LG+DPSSSYMHGHGR EHNEYLYYE PA V E
Sbjct: 522 YYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPE 574
BLAST of PI0026958 vs. NCBI nr
Match:
KAA0055624.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 245.4 bits (625), Expect = 3.8e-61
Identity = 127/173 (73.41%), Postives = 144/173 (83.24%), Query Frame = 0
Query: 4 LYITRLGAVVGHLRSNNSRLRDVANVPQQVLDICNNNERYIENIQYMYDVPIVPTPVQRR 63
LYIT+ GA + HLRSNN RL +VA+ PQQVL+ICNNNE+Y+ENI YMYDVPIVP PVQRR
Sbjct: 559 LYITQPGAAMSHLRSNNIRLWNVADDPQQVLNICNNNEQYMENIHYMYDVPIVPAPVQRR 618
Query: 64 RARVQEPDELEEVEQHVEEVPPVRQTQSETSDASPMMMMSTFGTGYNDSEVGQSSHFGTG 123
R VQEPD+LEEV+QH EEVPP+ QT+SE + SP+MMM TFGT Y DS VGQSS FG G
Sbjct: 619 RPLVQEPDQLEEVDQHGEEVPPMTQTKSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRG 678
Query: 124 YYNSEAGPSSSNFGQGYYNLGTDPSSSYMHGHGRDHEEHNEYLYYEAPAVVLE 177
YYNSEAG SS++FGQ YY+LG+DPSSSYMHGHGR EHNEYLYYE PA V E
Sbjct: 679 YYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPE 731
BLAST of PI0026958 vs. NCBI nr
Match:
KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 243.4 bits (620), Expect = 1.4e-60
Identity = 125/173 (72.25%), Postives = 145/173 (83.82%), Query Frame = 0
Query: 4 LYITRLGAVVGHLRSNNSRLRDVANVPQQVLDICNNNERYIENIQYMYDVPIVPTPVQRR 63
LYIT+ GA + HLRSNN RLR+VA+ PQQVL+ICN+NE+Y+ENI YMYDVPIVP PVQRR
Sbjct: 289 LYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRR 348
Query: 64 RARVQEPDELEEVEQHVEEVPPVRQTQSETSDASPMMMMSTFGTGYNDSEVGQSSHFGTG 123
R VQEPD+LEEV+QH +EVPP+ QTQSE + SP+MMM TFGT Y DS VGQSS FG G
Sbjct: 349 RPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRG 408
Query: 124 YYNSEAGPSSSNFGQGYYNLGTDPSSSYMHGHGRDHEEHNEYLYYEAPAVVLE 177
YYNS+AG SS++FGQ YY+LG+DPSSSYMHGHGR +HNEYLYYE PA V E
Sbjct: 409 YYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPE 461
BLAST of PI0026958 vs. NCBI nr
Match:
TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 243.4 bits (620), Expect = 1.4e-60
Identity = 125/173 (72.25%), Postives = 145/173 (83.82%), Query Frame = 0
Query: 4 LYITRLGAVVGHLRSNNSRLRDVANVPQQVLDICNNNERYIENIQYMYDVPIVPTPVQRR 63
LYIT+ GA + HLRSNN RLR+VA+ PQQVL+ICN+NE+Y+ENI YMYDVPIVP PVQRR
Sbjct: 1050 LYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRR 1109
Query: 64 RARVQEPDELEEVEQHVEEVPPVRQTQSETSDASPMMMMSTFGTGYNDSEVGQSSHFGTG 123
R VQEPD+LEEV+QH +EVPP+ QTQSE + SP+MMM TFGT Y DS VGQSS FG G
Sbjct: 1110 RPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRG 1169
Query: 124 YYNSEAGPSSSNFGQGYYNLGTDPSSSYMHGHGRDHEEHNEYLYYEAPAVVLE 177
YYNS+AG SS++FGQ YY+LG+DPSSSYMHGHGR +HNEYLYYE PA V E
Sbjct: 1170 YYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPE 1222
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U558 | 8.8e-64 | 75.72 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5A7VIP6 | 1.5e-63 | 75.14 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5A7UKC7 | 1.8e-61 | 73.41 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5D3BAB0 | 6.9e-61 | 72.25 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7T598 | 6.9e-61 | 72.25 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0050408.1 | 1.8e-63 | 75.72 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0067080.1 | 3.1e-63 | 75.14 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0055624.1 | 3.8e-61 | 73.41 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0036767.1 | 1.4e-60 | 72.25 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| TYJ95836.1 | 1.4e-60 | 72.25 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
