PI0026867 (gene) Melon (PI 482460) v1

Overview


Name	PI0026867
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Nuclear pore complex protein NUP160 isoform X5
Location	chr01: 8129043 .. 8131123 (-)
RNA-Seq Expression	PI0026867
Synteny	PI0026867

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAGACTTCTCCAACCTATGGATACTCTCAAGATTATTTTCTTTTGGTGACTGGAAGGATATAAGAGCCCACCTGGAGAAATTATTTCACATTACTATTAGCATCAATCCGTTATATGCAGACAAGGCCATTATTAAAGTAACTCAAGGGAAGGTTGAAGATCTAATCTTTACACCAGGTAAATGGTTTGACTATCAGAAATACCACCTACTCTTTGAGAAGTGGGATGAAGATAAGCATAGCAGATCAACGCATATTGCAGGATATGGAGGGTGACTTTCAATAAAGATTCTCCCTCTCAACTTATGGCGAAAAGAGATATTTGAAGTAATCGACGCATATTTTGGAGGATTGGAAAGTATAGCACTGGAAACAATCAACCTTATCAATTGTTTCGAAGCCAGAATTCAGGTCCGGAAGAATTTATGTGGTTTCCTACCAGCAACCATTGAATTAAAGAACGCAAGAAGAGGAGGTTTTTTTCTCAATTTCGGTGGCTTTGATTCATTTGAAGCTCCACAGTCGGTCAAAAAAGATTTATTACTTAGTGACTTTACTAATCCTATTGATTTATATAGATTAAATTCAGTTGCCATAGATGAAGAAGTTCCGGTGGATTTTTCGTTTTGGAAAATCAGTTAAGCTTGCAGAACAAACCGACAATCACGAGAAACCCATTTGAAGCAAAAGGAACCGCAATAGAAGTTGCAAAATCTGATCGGTTGGCCTCATCCTCGCTGGAGAAGATGGAGCAGACTATGGCCAAAATTCAAATTTGTGTGAAGAAGGGCAAAAGTCATGCGTGGGAAAAAAGATTAAGTCACCCTGGAGGAAAGAGAATATTGGCGGCCAAAAAGCAACTTTATTTCATGTTGGTTGTCTTTCCAGAATACAACCTGACGTTATCCCTCCAAAAGACTCCAATGCTTTCATTAAGAAGGGCCTTCAATTGTTGGGCCCCATAAACACGACCAATGAAGGGTCGCTTGGTTTCTGGTATGCAAATGGGGAAGAAGAAGAGCTGGAGCCCACAACCAAAACAAGTAACGGTTTTTCTTTTCCTCCTCTTGATGTGTCGCAACAGATTTCTCTGGAAAAAAAACCCCAGCAAAAAAGTCCCCTGTTCAATCAGTGGTGAGAGACCTTTAGAGATTCAAGACCACCCAGAAATTTTATATAAAAGGAAGAACAACTTACCACAATGCCTGGACAACTCTAATGAACTCTGATTTACTAGAAGAAAGCTGCGTGAAAATACAAACATTTGGTCTTGAGTGCAAAAGGTCAGTAAAGACTCGTCATCCTTTGTCAAATTTTAATCAATCTCATATTAAAATCCCAGGCTCAGACATTAAACTTGTGCGAGGTACTCTGCCCTCTTCCTCACACATTATAAATTTCAGAAAAGAACTATCAGATGATGAAGCATCAATAGTCAGTGCAAGCAGTGAAGAGTTAAGAGTCCGGGAATCCAGAGGAGTTGGAGGAACAGTTGTCTGATCCAGAGGGGCCGAGAACTCTAATGCATTGGGGCCAGACCTCCCCAAGTTATTTCTTACTCCAGAATCCAAGATGTCCTGCAAAGAGGCAGATGCTAGTCTCCCACTTGAACTAATACCATTCGTAGCTGCCTGCGAGATTGAATTAATCTGAGAAGGGTGATAAGCAATAGTGCAAGTATGAAAATTATTTCGTGGAATACAAGAGGTCTATTAAACAAATCAAGACAATTGGCCTTGAAAAGATTATTGAAGTCCACAAACCTAGTAGTGGTTTTAATTCAGAAAACGAAGCAAGAGGTTATCGACATCTCCCTGATTAAGGCTCTACGGAGCCTAAAGGACATTGGATGGGATTTTATTGAAGCAGCCGGTAGATCTGGAGGAATTCTGACTATGCGGGACGAAAGGAAGATTCAGTGTCTGAAGGTATCAAAGGCAGATATGTACTTTCAGTCAAGTGCACAACTGCATGCAAAAAGACTTGTTGGATTTGAAACGTGTATGGACCAACACAATATCAAGAAAGGAAGCTCATCTGGCCGGAGCACACTTCCCTTGCAGTTTTCTGTTTAG

mRNA sequence

ATGGAGGAAGACTTCTCCAACCTATGGATACTCTCAAGATTATTTTCTTTTGGTGACTGGAAGGATATAAGAGCCCACCTGGAGAAATTATTTCACATTACTATTAGCATCAATCCGTTATATGCAGACAAGGCCATTATTAAAGTAACTCAAGGGAAGGTTGAAGATCTAATCTTTACACCAGGTAAATGGTTTGACTATCAGAAATACCACCTACTCTTTGAGAAGTGGGATGAAGATAAGCATAGCAGATCAACGCATATTGCAGGATATGGAGGAATACAACCTGACGTTATCCCTCCAAAAGACTCCAATGCTTTCATTAAGAAGGGCCTTCAATTGTTGGGCCCCATAAACACGACCAATGAAGGGTCGCTTGGTTTCTGGTATGCAAATGGGGAAGAAGAAGAGCTGGAGCCCACAACCAAAACAAGTAACGGCTCAGACATTAAACTTGTGCGAGGTACTCTGCCCTCTTCCTCACACATTATAAATTTCAGAAAAGAACTATCAGATGATGAAGCATCAATAGTCAGTGCAAGCAGTGAAGAGTTAAGAGTCCGGGAATCCAGAGGAGTTGGAGGAACAGTTAAAACGAAGCAAGAGGTTATCGACATCTCCCTGATTAAGGCTCTACGGAGCCTAAAGGACATTGGATGGGATTTTATTGAAGCAGCCGGTAGATCTGGAGGAATTCTGACTATGCGGGACGAAAGGAAGATTCAGTGTCTGAAGGTATCAAAGGCAGATATGTACTTTCAGTCAAGTGCACAACTGCATGCAAAAAGACTTGTTGGATTTGAAACGTGTATGGACCAACACAATATCAAGAAAGGAAGCTCATCTGGCCGGAGCACACTTCCCTTGCAGTTTTCTGTTTAG

Coding sequence (CDS)

ATGGAGGAAGACTTCTCCAACCTATGGATACTCTCAAGATTATTTTCTTTTGGTGACTGGAAGGATATAAGAGCCCACCTGGAGAAATTATTTCACATTACTATTAGCATCAATCCGTTATATGCAGACAAGGCCATTATTAAAGTAACTCAAGGGAAGGTTGAAGATCTAATCTTTACACCAGGTAAATGGTTTGACTATCAGAAATACCACCTACTCTTTGAGAAGTGGGATGAAGATAAGCATAGCAGATCAACGCATATTGCAGGATATGGAGGAATACAACCTGACGTTATCCCTCCAAAAGACTCCAATGCTTTCATTAAGAAGGGCCTTCAATTGTTGGGCCCCATAAACACGACCAATGAAGGGTCGCTTGGTTTCTGGTATGCAAATGGGGAAGAAGAAGAGCTGGAGCCCACAACCAAAACAAGTAACGGCTCAGACATTAAACTTGTGCGAGGTACTCTGCCCTCTTCCTCACACATTATAAATTTCAGAAAAGAACTATCAGATGATGAAGCATCAATAGTCAGTGCAAGCAGTGAAGAGTTAAGAGTCCGGGAATCCAGAGGAGTTGGAGGAACAGTTAAAACGAAGCAAGAGGTTATCGACATCTCCCTGATTAAGGCTCTACGGAGCCTAAAGGACATTGGATGGGATTTTATTGAAGCAGCCGGTAGATCTGGAGGAATTCTGACTATGCGGGACGAAAGGAAGATTCAGTGTCTGAAGGTATCAAAGGCAGATATGTACTTTCAGTCAAGTGCACAACTGCATGCAAAAAGACTTGTTGGATTTGAAACGTGTATGGACCAACACAATATCAAGAAAGGAAGCTCATCTGGCCGGAGCACACTTCCCTTGCAGTTTTCTGTTTAG

Protein sequence

MEEDFSNLWILSRLFSFGDWKDIRAHLEKLFHITISINPLYADKAIIKVTQGKVEDLIFTPGKWFDYQKYHLLFEKWDEDKHSRSTHIAGYGGIQPDVIPPKDSNAFIKKGLQLLGPINTTNEGSLGFWYANGEEEELEPTTKTSNGSDIKLVRGTLPSSSHIINFRKELSDDEASIVSASSEELRVRESRGVGGTVKTKQEVIDISLIKALRSLKDIGWDFIEAAGRSGGILTMRDERKIQCLKVSKADMYFQSSAQLHAKRLVGFETCMDQHNIKKGSSSGRSTLPLQFSV

Homology

[Close]

BLAST of PI0026867 vs. ExPASy TrEMBL
Match: A0A5A7VEL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001380 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-17
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 14  LFSFGDWKDIRAHLEKLFHITISINPLYADKAIIKVTQGKVEDLIFTPGKWFDYQKYHLL 73
           LF+F DW +I   LE LF +    NPL+ADKAI+K+ QG +EDL    GKW+DY KYHLL
Sbjct: 97  LFTFDDWNEISLFLEDLFQVKNISNPLFADKAIVKIKQGNIEDLTINKGKWYDYGKYHLL 156

Query: 74  FEKWDEDKHSRSTHIAGYGG 94
           FEKW E K S  + I G+ G
Sbjct: 157 FEKWGEAKRSMPSLIKGFEG 176

[Close]

BLAST of PI0026867 vs. ExPASy TrEMBL
Match: A0A5A7U128 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1280G00090 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-15
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 4   DFSNLWILSRLFSFGDWKDIRAHLEKLFHITISINPLYADKAIIKVTQGKVEDLIFTPGK 63
           +F NLWI+++LF+F D + IR  LE  F   I INPL+ + A+I + +G ++DLI   GK
Sbjct: 62  NFENLWIITKLFAFDDRRKIRKMLENYFQAKIVINPLFDENALINLDEGSIKDLICNEGK 121

Query: 64  WFDYQKYHLLFEKWDEDKHSRSTHIAGYGG 94
           W     ++L FEKWD+ K+SR   + GYGG
Sbjct: 122 WQVLGSFYLKFEKWDKHKYSRPLTMKGYGG 151

[Close]

BLAST of PI0026867 vs. ExPASy TrEMBL
Match: A0A5A7T996 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00480 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-12
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 27  LEKLFHITISINPLYADKAIIKVTQGKVEDLIFTPGKWFDYQKYHLLFEKWDEDKHSRST 86
           LE LF + I+INP + ++A  K+  GK+E+L+ T  KWF+Y K+HLLFEKWD   HSR +
Sbjct: 172 LEDLFEVKITINPFFDNRATNKINHGKIENLVVTQDKWFNYGKFHLLFEKWDVINHSRPS 231

Query: 87  HIAGYGG 94
            I G+ G
Sbjct: 232 SIKGFRG 238

[Close]

BLAST of PI0026867 vs. ExPASy TrEMBL
Match: A0A5D3E3A5 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00110 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-12
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 27  LEKLFHITISINPLYADKAIIKVTQGKVEDLIFTPGKWFDYQKYHLLFEKWDEDKHSRST 86
           LE LF + I+INP + ++A  K+  GK+E+L+ T  KWF+Y K+HLLFEKWD   HSR +
Sbjct: 172 LEDLFEVKITINPFFDNRATNKINHGKIENLVVTQDKWFNYGKFHLLFEKWDVINHSRPS 231

Query: 87  HIAGYGG 94
            I G+ G
Sbjct: 232 SIKGFRG 238

[Close]

BLAST of PI0026867 vs. ExPASy TrEMBL
Match: A0A5D3BNW8 (Kinesin heavy chain-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00200 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.4e-07
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 4   DFSNLWILSRLFSFGDWKDIRAHLEKLFHITISINPLYADKAIIKVTQGKVEDLIFTPGK 63
           +F +LWI++++F+F DW+ IR  LE+ F   I INPL+ + A I + Q  ++D I   GK
Sbjct: 174 NFESLWIVTKVFAFDDWQMIRKSLEEYFQAKIVINPLFGENAFISIDQDSIKDRICEEGK 233

Query: 64  W 65
           W
Sbjct: 234 W 234

[Close]

BLAST of PI0026867 vs. NCBI nr
Match: KAA0063979.1 (hypothetical protein E6C27_scaffold616G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-17
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 14  LFSFGDWKDIRAHLEKLFHITISINPLYADKAIIKVTQGKVEDLIFTPGKWFDYQKYHLL 73
           LF+F DW +I   LE LF +    NPL+ADKAI+K+ QG +EDL    GKW+DY KYHLL
Sbjct: 97  LFTFDDWNEISLFLEDLFQVKNISNPLFADKAIVKIKQGNIEDLTINKGKWYDYGKYHLL 156

Query: 74  FEKWDEDKHSRSTHIAGYGG 94
           FEKW E K S  + I G+ G
Sbjct: 157 FEKWGEAKRSMPSLIKGFEG 176

[Close]

BLAST of PI0026867 vs. NCBI nr
Match: KAA0047189.1 (hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa] >TYK29739.1 hypothetical protein E5676_scaffold1280G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 5.2e-15
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 4   DFSNLWILSRLFSFGDWKDIRAHLEKLFHITISINPLYADKAIIKVTQGKVEDLIFTPGK 63
           +F NLWI+++LF+F D + IR  LE  F   I INPL+ + A+I + +G ++DLI   GK
Sbjct: 62  NFENLWIITKLFAFDDRRKIRKMLENYFQAKIVINPLFDENALINLDEGSIKDLICNEGK 121

Query: 64  WFDYQKYHLLFEKWDEDKHSRSTHIAGYGG 94
           W     ++L FEKWD+ K+SR   + GYGG
Sbjct: 122 WQVLGSFYLKFEKWDKHKYSRPLTMKGYGG 151

[Close]

BLAST of PI0026867 vs. NCBI nr
Match: KAA0038211.1 (Ulp1-like peptidase [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 27  LEKLFHITISINPLYADKAIIKVTQGKVEDLIFTPGKWFDYQKYHLLFEKWDEDKHSRST 86
           LE LF + I+INP + ++A  K+  GK+E+L+ T  KWF+Y K+HLLFEKWD   HSR +
Sbjct: 172 LEDLFEVKITINPFFDNRATNKINHGKIENLVVTQDKWFNYGKFHLLFEKWDVINHSRPS 231

Query: 87  HIAGYGG 94
            I G+ G
Sbjct: 232 SIKGFRG 238

[Close]

BLAST of PI0026867 vs. NCBI nr
Match: TYK30603.1 (Ulp1-like peptidase [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 27  LEKLFHITISINPLYADKAIIKVTQGKVEDLIFTPGKWFDYQKYHLLFEKWDEDKHSRST 86
           LE LF + I+INP + ++A  K+  GK+E+L+ T  KWF+Y K+HLLFEKWD   HSR +
Sbjct: 172 LEDLFEVKITINPFFDNRATNKINHGKIENLVVTQDKWFNYGKFHLLFEKWDVINHSRPS 231

Query: 87  HIAGYGG 94
            I G+ G
Sbjct: 232 SIKGFRG 238

[Close]

BLAST of PI0026867 vs. NCBI nr
Match: TYJ99818.1 (kinesin heavy chain-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-06
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 4   DFSNLWILSRLFSFGDWKDIRAHLEKLFHITISINPLYADKAIIKVTQGKVEDLIFTPGK 63
           +F +LWI++++F+F DW+ IR  LE+ F   I INPL+ + A I + Q  ++D I   GK
Sbjct: 174 NFESLWIVTKVFAFDDWQMIRKSLEEYFQAKIVINPLFGENAFISIDQDSIKDRICEEGK 233

Query: 64  W 65
           W
Sbjct: 234 W 234

The following BLAST results are available for this feature:

BLAST of PI0026867 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026867 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VEL7	1.6e-17	55.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U128	2.5e-15	45.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T996	7.6e-12	50.75	Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G...	[more]
A0A5D3E3A5	7.6e-12	50.75	Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8466...	[more]
A0A5D3BNW8	7.4e-07	42.62	Kinesin heavy chain-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of PI0026867 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063979.1	3.3e-17	55.00	hypothetical protein E6C27_scaffold616G001380 [Cucumis melo var. makuwa]	[more]
KAA0047189.1	5.2e-15	45.56	hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa] >TYK29739...	[more]
KAA0038211.1	1.6e-11	50.75	Ulp1-like peptidase [Cucumis melo var. makuwa]	[more]
TYK30603.1	1.6e-11	50.75	Ulp1-like peptidase [Cucumis melo var. makuwa]	[more]
TYJ99818.1	1.5e-06	42.62	kinesin heavy chain-like [Cucumis melo var. makuwa]	[more]

BLAST of PI0026867 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026867.1	PI0026867.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0110165	cellular anatomical entity